|
Name |
Accession |
Description |
Interval |
E-value |
| ND2 |
MTH00105 |
NADH dehydrogenase subunit 2; Provisional |
1-334 |
4.64e-161 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177167 [Multi-domain] Cd Length: 347 Bit Score: 453.92 E-value: 4.64e-161
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270267422 1 MNPITLTIIYSTIIMGPMITMLSPNLFVMWIGLEMNLLALIPLMMNNSNPRSTEAATKYFLTQATASMILLLSILMNFKQ 80
Cdd:MTH00105 1 MNPLILIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMY 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270267422 81 LGIWTFQPETNNTIMTMTFVSLAIKLGLAPFHSWLPEVTQGVKLSVGFILLTWQKVAPLSILFQFHELISPNLLITSAII 160
Cdd:MTH00105 81 SGQWTITKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAIL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270267422 161 SVLIGAWNGLNQTQTRKILAYSSIAHMGWMISILPYNPSLTTLNLIIYIIMTTPLFIIFHAHSFTSISSMSLMWNKMPMA 240
Cdd:MTH00105 161 SILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLM 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270267422 241 LPMVSLILLSTGGLPPLTGFLPKWAIITELMKNNGLPLATLMAMTALINLFFYTRLIYSTSLTTFPSNNNSKMYMHQNHT 320
Cdd:MTH00105 241 TSLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFPSTNNMKMKWQFENT 320
|
330
....*....|....
gi 270267422 321 KNNSVLSPTMIIST 334
Cdd:MTH00105 321 KPMTLLPTLIILST 334
|
|
| ND2 |
MTH00135 |
NADH dehydrogenase subunit 2; Provisional |
1-334 |
8.93e-114 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177193 [Multi-domain] Cd Length: 347 Bit Score: 333.70 E-value: 8.93e-114
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270267422 1 MNPITLTIIYSTIIMGPMITMLSPNLFVMWIGLEMNLLALIPLMMNNSNPRSTEAATKYFLTQATASMILLLSILMNFKQ 80
Cdd:MTH00135 1 MNPYVLTILLFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270267422 81 LGIWTFQPETNNTIMTMTFVSLAIKLGLAPFHSWLPEVTQGVKLSVGFILLTWQKVAPLSILFQFHELiSPNLLITSAII 160
Cdd:MTH00135 81 TGQWDIQQMSHPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAPT-NPTLLITLGLT 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270267422 161 SVLIGAWNGLNQTQTRKILAYSSIAHMGWMISILPYNPSLTTLNLIIYIIMTTPLFIIFHAHSFTSISSMSLMWNKMPMA 240
Cdd:MTH00135 160 STLVGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPAL 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270267422 241 LPMVSLILLSTGGLPPLTGFLPKWAIITELMKNNGLPLATLMAMTALINLFFYTRLIYSTSLTTFPSNNNSKMYMHQNHT 320
Cdd:MTH00135 240 TALTPLILLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPWRLPST 319
|
330
....*....|....
gi 270267422 321 KNNSVLSPTMIIST 334
Cdd:MTH00135 320 QLTLPLAISTTATL 333
|
|
| ND2 |
MTH00112 |
NADH dehydrogenase subunit 2; Provisional |
1-334 |
4.60e-110 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214423 [Multi-domain] Cd Length: 346 Bit Score: 324.47 E-value: 4.60e-110
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270267422 1 MNPITLTIIYSTIIMGPMITMLSPNLFVMWIGLEMNLLALIPLMMNNSNPRSTEAATKYFLTQATASMILLLSILMNFKQ 80
Cdd:MTH00112 1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270267422 81 LGIWTFQPETNNTIMTMTFVSLAIKLGLAPFHSWLPEVTQGVKLSVGFILLTWQKVAPLSILFQFHELISPNLLITSAII 160
Cdd:MTH00112 81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270267422 161 SVLIGAWNGLNQTQTRKILAYSSIAHMGWMISILPYNPSLTTLNLIIYIIMTTPLFIIFHAHSFTSISSMSLMWNKMPMA 240
Cdd:MTH00112 161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270267422 241 LPMVSLILLSTGGLPPLTGFLPKWAIITELMKNNGLPLATLMAMTALINLFFYTRLIYSTSLTTFPSNNNSKMYMHQNHT 320
Cdd:MTH00112 241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320
|
330
....*....|....
gi 270267422 321 KNNSvLSPTMIIST 334
Cdd:MTH00112 321 KNTL-TATLTTLST 333
|
|
| ND2 |
MTH00070 |
NADH dehydrogenase subunit 2; Provisional |
1-334 |
2.26e-108 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177142 [Multi-domain] Cd Length: 346 Bit Score: 319.94 E-value: 2.26e-108
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270267422 1 MNPITLTIIYSTIIMGPMITMLSPNLFVMWIGLEMNLLALIPLMMNNSNPRSTEAATKYFLTQATASMILLLSILMNFKQ 80
Cdd:MTH00070 1 MSPYALSILLSSLALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWF 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270267422 81 LGIWTFQPETNNTIMTMTFVSLAIKLGLAPFHSWLPEVTQGVKLSVGFILLTWQKVAPLSILFQFHELISPNLLITSAII 160
Cdd:MTH00070 81 TGEWTIMNMQTPLPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQISHLLNSNLLIIMGLL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270267422 161 SVLIGAWNGLNQTQTRKILAYSSIAHMGWMISILPYNPSLTTLNLIIYIIMTTPLFIIFHAHSFTSISSMSLMWNKMPMA 240
Cdd:MTH00070 161 STLIGGWGGLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTL 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270267422 241 LPMVSLILLSTGGLPPLTGFLPKWAIITELMKNNGLPLATLMAMTALINLFFYTRLIYSTSLTTFPSNNNSKMYMHQNhT 320
Cdd:MTH00070 241 TSMMMLTLLSLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYAMSLTTSPNTSNSKLYWRFK-N 319
|
330
....*....|....
gi 270267422 321 KNNSVLSPTMIIST 334
Cdd:MTH00070 320 KTNNLLSLTIILSL 333
|
|
| ND2 |
MTH00200 |
NADH dehydrogenase subunit 2; Provisional |
1-331 |
2.88e-85 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177246 [Multi-domain] Cd Length: 347 Bit Score: 261.06 E-value: 2.88e-85
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270267422 1 MNPITLTIIYSTIIMGPMITMLSPNLFVMWIGLEMNLLALIPLMMNNSNPRSTEAATKYFLTQATASMILLLSILMNFKQ 80
Cdd:MTH00200 1 MSPLILPLFILSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWT 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270267422 81 LGIWTFQPETNNTIMTMTFVSLAIKLGLAPFHSWLPEVTQGVKLSVGFILLTWQKVAPLSILFQFHELISPNLLITSAII 160
Cdd:MTH00200 81 SGQWGISEMLGPLSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLAPALNSNILLLLGLL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270267422 161 SVLIGAWNGLNQTQTRKILAYSSIAHMGWMISILPYNPSLTTLNLIIYIIMTTPLFIIFHAHSFTSISSMSLMWNKMPMA 240
Cdd:MTH00200 161 SVLVGGWGGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPIL 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270267422 241 LPMVSLILLSTGGLPPLTGFLPKWAIITELMKNNGLPLATLMAMTALINLFFYTRLIYSTSLTTFPSNNNSKMYMHQNHT 320
Cdd:MTH00200 241 SMLLGLTLLSLGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLTLLTLSPNQINMMSSWRTKSN 320
|
330
....*....|.
gi 270267422 321 KNNSVLSPTMI 331
Cdd:MTH00200 321 SNLLVGLLLLL 331
|
|
| ND2 |
MTH00041 |
NADH dehydrogenase subunit 2; Validated |
1-308 |
8.36e-84 |
|
NADH dehydrogenase subunit 2; Validated
Pssm-ID: 177116 [Multi-domain] Cd Length: 349 Bit Score: 257.55 E-value: 8.36e-84
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270267422 1 MNPITLTIIYSTIIMGPMITMLSPNLFVMWIGLEMNLLALIPLMMNNSNPRSTEAATKYFLTQATASMILLLSILMNFKQ 80
Cdd:MTH00041 1 MNRNVLIFLITSIILGTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270267422 81 LGIWTFQPETNNTIMTMTFVSLAIKLGLAPFHSWLPEVTQGVKLSVGFILLTWQKVAPLSILFQFHELISPNLLITSAII 160
Cdd:MTH00041 81 SGSWSINGPLNTLSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNLLNSNILILCGIL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270267422 161 SVLIGAWNGLNQTQTRKILAYSSIAHMGWMISILPYNPSLTTLNLIIYIIMTTPLFIIFHAHSFTSISSMSLMWNKMPMA 240
Cdd:MTH00041 161 SVLVGGWGGLNQTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPIS 240
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 270267422 241 LPMVSLILLSTGGLPPLTGFLPKWAIITELMKNNGLPLATLMAMTALINLFFYTRLIYSTSLTTFPSN 308
Cdd:MTH00041 241 AFLFILSILSLGGLPPLTGFLNKFISLYCLIQNNSILISIILIIGSLLSLFFYLRISFNTSLTLFPQH 308
|
|
| ND2 |
MTH00160 |
NADH dehydrogenase subunit 2; Provisional |
1-333 |
1.16e-56 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214442 [Multi-domain] Cd Length: 335 Bit Score: 187.34 E-value: 1.16e-56
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270267422 1 MNPITLTIIYSTIIMGPMITMLSPNLFVMWIGLEMNLLALIPLMMNNSNPRSTEAATKYFLTQATASMILLLSILMNFkq 80
Cdd:MTH00160 2 MMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNM-- 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270267422 81 lgiwTFQPETNNTIMTMTFVSLAIKLGLAPFHSWLPEVTQGVKLSVGFILLTWQKVAPLSILFQFhelISPNLLITSAII 160
Cdd:MTH00160 80 ----LNLMLFNNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYL---INNNFIIIIIIL 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270267422 161 SVLIGAWNGLNQTQTRKILAYSSIAHMGWMISILPYNPSLTTLNLIIYIIMTTPLFIIFHAHSFTSISSMSLMWNKMPMA 240
Cdd:MTH00160 153 SAIIGAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKI 232
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270267422 241 LPMVSLILLSTGGLPPLTGFLPKWAIITELMKNNGLPLATLMAMTALINLFFYTRLIYSTSLTTFPSNNNSKMYMHQNHT 320
Cdd:MTH00160 233 KFLLFLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLMLNYNKNKWNLKKKKNKFS 312
|
330
....*....|...
gi 270267422 321 KNNSVLSPTMIIS 333
Cdd:MTH00160 313 LILNFLSFISLFG 325
|
|
| ND2 |
MTH00144 |
NADH dehydrogenase subunit 2; Provisional |
13-315 |
7.74e-55 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214432 [Multi-domain] Cd Length: 328 Bit Score: 182.39 E-value: 7.74e-55
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270267422 13 IIMGPMITMLSPNLFVMWIGLEMNLLALIPLMMNNSNPRSTEAATKYFLTQATASMILLLSILMNFKQLGIWtfqpetnn 92
Cdd:MTH00144 13 MVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNLSFSW-------- 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270267422 93 TIMTMTFVSLAIKLGLAPFHSWLPEVTQGVKLSVGFILLTWQKVAPLSILFQFHELISP-NLLITSAIISVLIGAWNGLN 171
Cdd:MTH00144 85 FSMSLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLFLLSNFLDLYWLaYLLCVISVLSALVGSIGGLN 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270267422 172 QTQTRKILAYSSIAHMGWMISILPYNPSLTTLNLIIYIIMTTPLFIIFHAHSFTSISSMSLMWNKMPMALPMVSLIlLST 251
Cdd:MTH00144 165 QTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSLWSGDSGSMKDLGSLKPSYKTGLSIISLL-LSL 243
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 270267422 252 GGLPPLTGFLPKWAIITELMKNNGLPLATLMAMTALINLFFYTRLIYSTSLTTFPSNNNSKMYM 315
Cdd:MTH00144 244 GGLPPFLGFCSKLLVLISSMESSPLLLILLLLLGSLISLFFYLSVFFSSFLSSSKSKKSNSSKV 307
|
|
| ND2 |
MTH00011 |
NADH dehydrogenase subunit 2; Validated |
5-299 |
6.28e-49 |
|
NADH dehydrogenase subunit 2; Validated
Pssm-ID: 164587 [Multi-domain] Cd Length: 330 Bit Score: 166.88 E-value: 6.28e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270267422 5 TLTIIYSTIIMGPMITMLSPNLFVMWIGLEMNLLALIPLMMNNSNPRSTEAATKYFLTQATASMILLLSILMnfkqlgIW 84
Cdd:MTH00011 7 TMFLFSSTMTLGTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLGMTM------MW 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270267422 85 TFQPETNNTIMTMTFVSLAIKLGLAPFHSWLPEVTQGVKLSVGFILLTWQKVAPLSILFQFHELISPNLLITSAIISVLI 164
Cdd:MTH00011 81 SFPSLLKNITALMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNILPMMTSMAAMSALA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270267422 165 GAWNGLNQTQTRKILAYSSIAHMGWMISILPYNPSLTTLNLIIYIIMTTPLFIIFHAHSFTSISSMSLMWNKMPMALPMV 244
Cdd:MTH00011 161 GGLGGMNQTQLRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTTSMSL 240
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*
gi 270267422 245 SLILLSTGGLPPLTGFLPKWAIITELMKNNGLPLATLMAMTALINLFFYTRLIYS 299
Cdd:MTH00011 241 FIMLLSLGGLPPFTGFMPKLMAIETLTSNSMILILLVLIVGSLMNLFYYLNLIFN 295
|
|
| ND2 |
MTH00197 |
NADH dehydrogenase subunit 2; Provisional |
8-313 |
6.52e-48 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177244 [Multi-domain] Cd Length: 323 Bit Score: 164.07 E-value: 6.52e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270267422 8 IIYSTIIMGPMITMLSPNLFVMWIGLEMNLLALIPLMMNNSNPRSTEAATKYFLTQATASMILLLSILMNFKQLGIWTFQ 87
Cdd:MTH00197 2 LFLFIIFGGVLFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMGGSLSFSNLYLSLLS 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270267422 88 petnntiMTMTFVSLAIKLGLAPFHSWLPEVTQGVKLSVGFILLTWQKVAPLSILFQFHEliSPNLLITSAIISVLIGAW 167
Cdd:MTH00197 82 -------VVLVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAPLLILAFNSS--SFMGLLICSVLSSLIGGI 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270267422 168 NGLNQTQTRKILAYSSIAHMGWMISILPYNPSLTTLNLIIYIIMTTPLFIIFHAHSFTSISSMSLMWNKMPMALPMVSLI 247
Cdd:MTH00197 153 GGMNQSNIRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQQYSNPESMSSNLVFLGLS 232
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 270267422 248 LLSTGGLPPLTGFLPKWAIITELMKNNGLPLATLMAMTALINLFFYTRLIYSTSLTTFPSNNNSKM 313
Cdd:MTH00197 233 FLSLGGLPPLSGFFLKWLILTSLLSSNISLITFMLILSTCFSLYYYLSLAYKSLILSNWMINFLMK 298
|
|
| Proton_antipo_M |
pfam00361 |
Proton-conducting membrane transporter; This is a family of membrane transporters that ... |
23-286 |
4.56e-33 |
|
Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.
Pssm-ID: 425636 [Multi-domain] Cd Length: 291 Bit Score: 123.96 E-value: 4.56e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270267422 23 SPNLFVMWIGLEMNLLALIPLM-MNNSNPRSTEAATKYFLTQATASMILLLSILMNFKQLGIWTFQPETNNTIMT----- 96
Cdd:pfam00361 1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSKALTGGlnssg 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270267422 97 ------MTFVSLAIKLGLAPFHSWLPEVTQGVKLSVGFILL-TWQKVAPLsILFQFHELISP------NLLITSAIISVL 163
Cdd:pfam00361 81 llllflLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAaTLVKAGGY-GLIRRSLLYLPsspfiqQILLILAIISML 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270267422 164 IGAWNGLNQTQTRKILAYSSIAHMGWMISIL----PYNPSLTTLNLIIYIIMTTPLFIIFHA-----HSFTSISSMSLMW 234
Cdd:pfam00361 160 LGSLAALVQTDIKRLLAYSSISHMGYMLIALgagtIYGIQAAIFHLLTHGLFSAGLFLCAGSviyrrVHTRNIRDYGGLA 239
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 270267422 235 NKMPMALPMVSLILLSTGGLPPLTGFLPKWAIITELMKNNGLPLATLMAMTA 286
Cdd:pfam00361 240 KTMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGVVGS 291
|
|
| NuoN |
COG1007 |
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ... |
18-298 |
6.22e-33 |
|
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440631 [Multi-domain] Cd Length: 473 Bit Score: 127.15 E-value: 6.22e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270267422 18 MITMLS-PNLFVMWIGLEMNLLALIPL-MMNNSNPRSTEAATKYFLTQATASMILLLSILM--------NFKQLGIWTFQ 87
Cdd:COG1007 115 MMLMASaNDLLTLFLGLELLSLSLYVLvAFRRDDRRSSEAALKYFLLGALSSGFLLYGISLlygatgslNLAGIAAALAA 194
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270267422 88 PETNNTI----MTMTFVSLAIKLGLAPFHSWLPEVTQGVKLSVGFILLTWQKVAPLSILFQFHELISPNL-------LIT 156
Cdd:COG1007 195 GGANSPLlllgLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAALLRLLVEAFPGLaadwqllLAV 274
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270267422 157 SAIISVLIGAWNGLNQTQTRKILAYSSIAHMGWM-ISILPYNP---SLTTLNLIIYIIMTTPLFIIF-----HAHSFTSI 227
Cdd:COG1007 275 LAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLlLGLAAGTPlgvSAALFYLLAYLFMNLGAFAVIlllsrKGGEAEEI 354
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 270267422 228 SSMSLMWNKMPMALPMVSLILLSTGGLPPLTGFLPKWAIITELMKNNGLPLATLMAMTALINLFFYTRLIY 298
Cdd:COG1007 355 EDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLRVVK 425
|
|
| PRK05777 |
PRK05777 |
NADH-quinone oxidoreductase subunit NuoN; |
14-297 |
2.41e-32 |
|
NADH-quinone oxidoreductase subunit NuoN;
Pssm-ID: 235603 [Multi-domain] Cd Length: 476 Bit Score: 125.70 E-value: 2.41e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270267422 14 IMGPMITMLSPNLFVMWIGLEMNLLALIPL-MMNNSNPRSTEAATKYFLTQATASMILLLSILM--------NFKQLGIW 84
Cdd:PRK05777 113 LLGMMVMVSANDLLTLFLGLELLSLPLYALaALRRDRRRSLEAAIKYFVLGALASGFLLYGMSLlygatgslSFAGIAKA 192
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270267422 85 TFQPETNNTIMT----MTFVSLAIKLGLAPFHSWLPEVTQGVKLSVGFILLTWQKVAPLSILFQFHELISPNL------- 153
Cdd:PRK05777 193 LADGSGNSLLLLfglvFLLVGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAVLLRLLVVAFGGLsedwqqv 272
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270267422 154 LITSAIISVLIGAWNGLNQTQTRKILAYSSIAHMGWMI------SILPYNPSLttLNLIIYIIMTTPLFIIFHA-----H 222
Cdd:PRK05777 273 LAIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLLvglaagTAEGYSAVL--FYLLAYLFMTLGAFGVISLlrrkgG 350
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 270267422 223 SFTSISSMSLMWNKMPMALPMVSLILLSTGGLPPLTGFLPKWAIITELMKNNGLPLATLMAMTALINLFFYTRLI 297
Cdd:PRK05777 351 EAESISDFAGLSKRSPLLAAVMTIFMLSLAGIPPTAGFWGKFYVFEAAVEAGLWWLAVIGVLNSAIGAFYYLRVI 425
|
|
| HyfB |
COG0651 |
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ... |
14-301 |
9.56e-28 |
|
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];
Pssm-ID: 440416 [Multi-domain] Cd Length: 430 Bit Score: 112.16 E-value: 9.56e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270267422 14 IMGPMITMLSPNLFVMWIGLEMNLLALIPLMMNNSNPRSTEAATKYFLTQATASMILLLSILM--------NFKQLG--I 83
Cdd:COG0651 117 LAGMNGAFLTGDLFNLFVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLlygatgtlNMADLAarL 196
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270267422 84 WTFQPETNNTIMTMTFVSLAIKLGLAPFHSWLPE--------VT---QGVKLSVGF--ILLTWQKVAPLSILFQFHELis 150
Cdd:COG0651 197 AELDPGLLLAAFALLLVGFGIKAALFPLHFWLPDaypaapspVSallSGLLTKVGVyaILRVLTLLFGADPALFLGTL-- 274
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270267422 151 pnlLITSAIISVLIGAWNGLNQTQTRKILAYSSIAHMGWMISILPYNPSLTTLNLIIYII----MTTPLF----IIFHAH 222
Cdd:COG0651 275 ---LLVLGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYILLGLGLGTPLGLAGALFHLLnhalAKALLFlaagAIERAT 351
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 270267422 223 SFTSISSMSLMWNKMPMALPMVSLILLSTGGLPPLTGFLPKWAIITELMKNNGLPLATLMAMTALINLFFYTRLIYSTS 301
Cdd:COG0651 352 GTRDLDKLGGLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLAAVLLLSSLLTLAYFVRIFGRAQ 430
|
|
| ND2 |
MTH00199 |
NADH dehydrogenase subunit 2; Provisional |
13-298 |
3.14e-27 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177245 [Multi-domain] Cd Length: 460 Bit Score: 111.26 E-value: 3.14e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270267422 13 IIMGPMITMLSPNLFVMWIGLEMNLLAL-IPLMMNNSNPRSTEAATKYFLTQATASMILLLSILMNFKQLGIWTFQpeTN 91
Cdd:MTH00199 106 VALGSLLLVSSINWLSIYLAIELQTLTLfILVALKRDSAYSTEAGLKYFVLGAVSSGLFLFGCALLYGLTGETSIQ--GI 183
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270267422 92 NTIMT------MTFVSLAIKLGLAPFHSWLPEVTQGVKLSVGFILLTWQKVAPLSILFQfhelISP--NLLITSAIISVL 163
Cdd:MTH00199 184 NSILTgdvgkiLITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILVQ----IGPvtNVVLICAVLSII 259
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270267422 164 IGAWNGLNQTQTRKILAYSSIAHMGWMI------SILPYNPSLttLNLIIYIIMTTPLFIIFHAHSFTS--ISSMSLMWN 235
Cdd:MTH00199 260 YGAIGALNQTKIKRLLAYSGIGHMGFILfgvaigSFESIQASL--IYMIIYVIMSICSFSIILSLKLTKglIVEVSGLSR 337
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 270267422 236 KMPMALPMVSLILLSTGGLPPLTGFLPKWAIITELMKNNGLPLATLMAMTALINLFFYTRLIY 298
Cdd:MTH00199 338 KNPVIALTLALTFLSIAGIPPLAGFLSKWLILLSGVSSGYYLICIIAVLSSVIAGVYYVRVVQ 400
|
|
| ND2 |
MTH00196 |
NADH dehydrogenase subunit 2; Provisional |
13-297 |
1.10e-25 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214453 [Multi-domain] Cd Length: 365 Bit Score: 105.50 E-value: 1.10e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270267422 13 IIMGPMITMLSPNLFVMWIGLEMNLLALIPLMMNNSNP-RSTEAATKYFLTQATASMILLLSILMNFKQLGIWTFQ---- 87
Cdd:MTH00196 2 VALGILCLISSSNWLSVYLAIELQTLSLFILIAQNRGSgYSAEAGLKYFVLGALSSGLFLFGCALLCGTTGGLHLSyinl 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270267422 88 ----PETNNTIMT-----MTFVSLAIKLGLAPFHSWLPEVTQGVKLSVGFILLTWQKVAPLSILFQFHELIspNLLITSA 158
Cdd:MTH00196 82 vlnsGQSFSSVSVpigylLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSILVSIGLNV--NILLIGG 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270267422 159 IISVLIGAWNGLNQTQTRKILAYSSIAHMGWMI------SILPYNPSLttLNLIIYIIMTTPLFIIFHAHSFTS--ISSM 230
Cdd:MTH00196 160 LFSLFVGAIGALNQTKIKRLLAYSGIGHMGFVLwgieigSFESIQASL--VYLFIYIIMSICVFSIILALNVYKnlIIEF 237
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 270267422 231 SLMWNKMPMALPMVSLILLSTGGLPPLTGFLPKWAIITELMKNNGLPLATLMAMTALINLFFYTRLI 297
Cdd:MTH00196 238 SGLSRRLPILAITLALTFLSIAGIPPLVGFLGKWLILLSGVVYQYYLIFLLAVFCSVIAGVYYVRIV 304
|
|
| NDH_I_N |
TIGR01770 |
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ... |
6-313 |
1.37e-23 |
|
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]
Pssm-ID: 273795 [Multi-domain] Cd Length: 468 Bit Score: 100.79 E-value: 1.37e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270267422 6 LTIIYSTIIMGPMITMLSPNLFVMWIGLEMNLLALIPLM-MNNSNPRSTEAATKYFLTQATASMILLLSILM-------- 76
Cdd:TIGR01770 104 FYILLLFALLGIFLLVSSNDLLSIYLGLELQSLCFYVLAgLKRKSRFSTEAGLKYFILGAFSSGLLLFGISLiygftgsl 183
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270267422 77 NFKQLGIWTFQPETNNTIMTM----TFVSLAIKLGLAPFHSWLPEVTQGVKLSVGFILLTWQKVAP--------LSILFQ 144
Cdd:TIGR01770 184 NFEDLLLFLSNGMLNISLLLLgivlILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIfavflrlfLYILFG 263
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270267422 145 FHELISPNLLITsAIISVLIGAWNGLNQTQTRKILAYSSIAHMGWMISILpynpSLTTLNLI--------IYIIMTTPLF 216
Cdd:TIGR01770 264 FSEAWQIFLAII-AFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGL----LAGTLEGIkavlfyifIYALMSLGAF 338
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270267422 217 IIFHAHSFT------SISSMSLMWNKMPMALPMVSLILLSTGGLPPLTGFLPKWAIITELMKNNGLPLATLMAMTALINL 290
Cdd:TIGR01770 339 GVLSLLRSYkdewieYISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGA 418
|
330 340
....*....|....*....|....*..
gi 270267422 291 FFYTRLI----YSTSLTTFPSNNNSKM 313
Cdd:TIGR01770 419 FYYLRVVkvmyFDKPERRIPSNPQSKA 445
|
|
| PRK08375 |
PRK08375 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
21-298 |
8.66e-18 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 236251 [Multi-domain] Cd Length: 487 Bit Score: 84.16 E-value: 8.66e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270267422 21 MLSPNLFVMWIGLEMNLLALIPLMMNNSNPRSTEAATKYFLTQATASMILLLSILMNFKQLGIWTF--------QPETNN 92
Cdd:PRK08375 123 LLTADLFNLFVFLEIMSLSSYALVAMGGDRRALAAARKYLIVGLIGSTFLLIGVGLLYGVTGTLNMadlagalaENPTVV 202
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270267422 93 TIMTMTFVSLAIKLGLAPFHSWLPEVTQGVKLSV-GFILLTWQKVAPLSIL------FQFHELISPNL---LITSAIISV 162
Cdd:PRK08375 203 TAFGFVLLALALKAAVFPLHTWLPRAYPAAPPVVtALLSGLVTKVAVYALIriyftvFGGDFRFALGLgwlLAVLALLSM 282
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270267422 163 LIGAWNGLNQTQTRKILAYSSIAHMGWMISILPYNPSLTTLNLIIYI----IMTTPLF----IIFHAHSFTSISSMSLMW 234
Cdd:PRK08375 283 LVGSLAALGQDDVKRVLAYSTVSQMGYILLGLALLTPLALAAGLLHLlhhaLMKGALFlaagAIEVTYGTRRLSELSGLG 362
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 270267422 235 NKMPMALPMVSLILLSTGGLPPLTGFLPKWAIITELMKNNGLPLATLMAMTALINLFFYTRLIY 298
Cdd:PRK08375 363 RRMPLTAAAFAVASLSLIGVPPTSGFVSKWYLVVGAVEAGQWLVLAVLLASSLLALLYFLRIWY 426
|
|
| NuoM |
COG1008 |
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ... |
55-288 |
1.19e-15 |
|
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440632 [Multi-domain] Cd Length: 488 Bit Score: 77.43 E-value: 1.19e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270267422 55 AATKYFLTQATASMILLLSILMNFKQLGIWTFQ----------PETNNTIMTMTFVSLAIKLGLAPFHSWLPEV-----T 119
Cdd:COG1008 162 AAIKFFLYTLAGSLLMLVAILALYFLAGALTFDiaelaaaplpLTAQLLLFLAFFIAFAVKVPMFPFHTWLPDAhveapT 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270267422 120 QGVKLSVGfILLtwqKVA-------PLSILFQFHELISPnLLITSAIISVLIGAWNGLNQTQTRKILAYSSIAHMGWM-I 191
Cdd:COG1008 242 AGSVLLAG-VLL---KMGgygllrfALPLFPEASAYFAP-LLAALGVIGIIYGALVALAQTDLKRLIAYSSVSHMGFVlL 316
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270267422 192 SILpynpSLTTLNL---IIYII----MTTPLFIIF-----HAHSfTSISSMSLMWNKMPMALPMVSLILLSTGGLPPLTG 259
Cdd:COG1008 317 GIF----ALNPLGLqgaVLQMVshglITAALFLLVgvlydRTHT-RDIADLGGLAKRMPVLAALFLLAALASLGLPGTSG 391
|
250 260
....*....|....*....|....*....
gi 270267422 260 FLPKWAIITELMKNNglPLATLMAMTALI 288
Cdd:COG1008 392 FVGEFLVLLGAFQVN--PWLAILAALGLI 418
|
|
| ND2 |
MTH00198 |
NADH dehydrogenase subunit 2; Provisional |
15-297 |
1.81e-15 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214454 [Multi-domain] Cd Length: 607 Bit Score: 77.21 E-value: 1.81e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270267422 15 MGPMITMLSPNLFVMWIGLEMNLLALIPLMMNNSNPRST---------EAATKYFLTQATASMILLLSILMNFKQLG--- 82
Cdd:MTH00198 199 LGGLLLIESANWLTIYLALEFQTLALFILAGEGSQPGSHfpspgntppESGLKYWILGAMSSGFYLFGCALYFGFTGneg 278
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270267422 83 ----IWTFQPETNNTIMTM-----TFVSLAI--KLGLAPFHSWLPEVTQGVKLSVGFILLTWQKVAPLSILFQFheLISP 151
Cdd:MTH00198 279 mlgtILSATLETTNIELRQgslgyLFITVAIlfKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKFTVYILLTSL--VITS 356
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270267422 152 NLLITSAIISVLIGAWNGLNQTQTRKILAYSSIAHMGWM---ISILPYNPSLTTLN-LIIYIIMTTPLFII------FHA 221
Cdd:MTH00198 357 KLLLSVAIISLVVGAFGALNQTRIKRLLAYSGIGHIGFIligVSAGTYESLQASWTyAVTYLVSALASFTVictleeFGT 436
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270267422 222 HSFTS---------------ISSMSLMWNKMPMALPMVSLILLSTGGLPPLTGFLPKWAIITELMK---NNGLPLATLMA 283
Cdd:MTH00198 437 RTPTSrqrdgsfgnynlvrrLVDLTILSRGQPYIAFSLAIVFLSLAGIPPLLGFLGKWFILVGSIKiafSSSLSIYYLVA 516
|
330
....*....|....*...
gi 270267422 284 MTALI----NLFFYTRLI 297
Cdd:MTH00198 517 LFAIIctciSAFYYIRIV 534
|
|
| ndhB |
CHL00049 |
NADH dehydrogenase subunit 2 |
51-297 |
1.20e-14 |
|
NADH dehydrogenase subunit 2
Pssm-ID: 176990 [Multi-domain] Cd Length: 494 Bit Score: 74.66 E-value: 1.20e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270267422 51 RSTEAATKYFLTQATASMILL--LSIL-------MNFKQL--GIWTFQPETNNTI---MTMTFVSLAIKLGLAPFHSWLP 116
Cdd:CHL00049 159 RSNEATMKYLLMGGASSSILVygFSWLyglsggeIELQEIvnGLINTQMYNSPGIsiaLIFITVGIGFKLSLAPFHQWTP 238
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270267422 117 EVTQGVKLSVGFILLTWQKVAPL-------SILFQFHELISPNLLITSAIISVLIGAWNGLNQTQTRKILAYSSIAHMGW 189
Cdd:CHL00049 239 DVYEGSPTPVVAFLSVTSKVAASalatrifDIPFYFSSNEWHLLLEILAILSMILGNLIAITQTSMKRMLAYSSIGQIGY 318
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270267422 190 -MISILPYNP-----SLTTLnLIIYIIMTTPLF---IIFHAHSFT-SISSMSLMWNKMPMALPMVSLILLSTGGLPPLTG 259
Cdd:CHL00049 319 vIIGIIVGDSndgyaSMITY-MLFYIFMNLGTFaciVLFGLRTGTdNIRDYAGLYTKDPFLALSLALCLLSLGGIPPLAG 397
|
250 260 270
....*....|....*....|....*....|....*...
gi 270267422 260 FLPKWAIITELMKNNGLPLATLMAMTALINLFFYTRLI 297
Cdd:CHL00049 398 FFGKLYLFWCGWQAGLYFLVSIGLLTSVISIYYYLKII 435
|
|
| NDH_I_M |
TIGR01972 |
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ... |
15-288 |
2.45e-14 |
|
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]
Pssm-ID: 273903 [Multi-domain] Cd Length: 481 Bit Score: 73.44 E-value: 2.45e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270267422 15 MGPMITMLSPNLFVMWIGLEMNLLALIPLMMNNSNPRSTEAATKYFLTQATASMILLLSILMnFKQLGIWTFQ-PETNNT 93
Cdd:TIGR01972 117 AGVIGVFLALDLFLFYVFWEAMLIPMYLLIGVWGGPNRIYAAMKFFLYTLAGSLLMLLAILG-LYFLGGGTFDlLELLNL 195
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270267422 94 IMTMT---------FVSLAIKLGLAPFHSWLP----EVTQGVKLSVGFILLtwqKVAP-------LSILFQFHELISPnL 153
Cdd:TIGR01972 196 PLPFGvqtwlflafFIAFAVKVPLFPLHTWLPdahvEAPTAGSVILAGVLL---KMGTygflrfnLPLFPDASLYFAP-V 271
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270267422 154 LITSAIISVLIGAWNGLNQTQTRKILAYSSIAHMGW-MISILPYNP---SLTTLNLIIYIIMTTPLFIIF-----HAHSf 224
Cdd:TIGR01972 272 LAALGVIAIIYGALIALAQTDIKRLIAYSSISHMGFvLLGIFSFNElgiSGAVFQMISHGLITAALFLLVgvlyeRAHT- 350
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 270267422 225 TSISSMSLMWNKMPMALPMVSLILLSTGGLPPLTGFLPKWAIITELMKNNglPLATLMAMTALI 288
Cdd:TIGR01972 351 RDIAKYGGLANKMPVLAAFFMLFAMASLGLPGTSGFVGEFLILLGSFKVN--PVVAFLAALGIV 412
|
|
| PRK02504 |
PRK02504 |
NAD(P)H-quinone oxidoreductase subunit N; |
49-297 |
4.90e-14 |
|
NAD(P)H-quinone oxidoreductase subunit N;
Pssm-ID: 235044 [Multi-domain] Cd Length: 513 Bit Score: 72.78 E-value: 4.90e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270267422 49 NPRSTEAATKYFLTQATASMILL--LSIL-------MNFKQLGIWTFQPETNNTIMTMTFV--SLAIKLGLAPFHSWLPE 117
Cdd:PRK02504 156 DPRSNEAALKYLLIGAASSAIFLygSSLLyglsggsTQLSAIALALITSPSLGLALALVFViaGIAFKISAVPFHQWTPD 235
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270267422 118 VTQGVKLSVGFILLTWQKVAPLSILFQFHELISPN-------LLITSAIISVLIGAWNGLNQTQTRKILAYSSIAHMGW- 189
Cdd:PRK02504 236 VYEGSPTPVVAFLSVGSKAAGFALAIRLLVTAFPSfdeqwklLFTALAILSMVLGNVVALAQTSMKRMLAYSSIGQAGFv 315
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270267422 190 MISILPYNP---SLTTLNLIIYIIMTTPLF---IIFHAHSFTS-ISSMSLMWNKMPMALPMVSLILLSTGGLPPLTGFLP 262
Cdd:PRK02504 316 MIGLVAGTEagyASMVFYLLAYLFMNLGAFacvILFSLRTGTDqISDYAGLYQKDPLLTLGLSLCLLSLGGIPPLAGFFG 395
|
250 260 270
....*....|....*....|....*....|....*
gi 270267422 263 KWAIITELMKNNGLPLATLMAMTALINLFFYTRLI 297
Cdd:PRK02504 396 KIYLFWAGWQAGLYLLVLVGLVTSVISIYYYIRVI 430
|
|
| PRK12667 |
PRK12667 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
25-299 |
1.59e-13 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 237167 [Multi-domain] Cd Length: 520 Bit Score: 71.16 E-value: 1.59e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270267422 25 NLFVMwigLEMNLLALIPLMM-NNSNPRSTEAATKYFLTQATASMILLLSI-------------LMNFKQLGIW---TFQ 87
Cdd:PRK12667 137 NLFVM---LEVLSISAYGLVAyYRDRGDAVEAAIKYALIGAVGTTLYFLALaflyatfgtlnmaDLSAKIRGLSfplTGG 213
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270267422 88 PETNNTIMTMTFVSLA-----IKLGLAPFHSWLPEV-----------TQGVKLSVGFILLT---WQKVAPLSILFQFHEL 148
Cdd:PRK12667 214 LAGNPPLALGVALALAlwaftIKAAIFPNHFWLPDAhpaapspvsamLSGLVVNVGAYAIIrflYTIFGISPSLIDFRAA 293
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270267422 149 ISPNLLITSAIiSVLIGAWNGLNQTQTRKILAYSSIAHMGWMISILPYNPSLTTLNLIIYII----------MTTPLFIi 218
Cdd:PRK12667 294 LSPILIILGAV-SAIIGALMMVVQKDVKRLLAYSTISHMGYIFMGIGIGTQLGLAAALFHIInhaiaksllfLASGVFI- 371
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270267422 219 fHAHSFTSISSMSLMWNKMPMALPMVSLILLSTGGLPPLTGFLPKWAIITELMKNNGLPLATLMAMTALINLFFYTRLIY 298
Cdd:PRK12667 372 -HAAGTRDIDELAGLGRKMPIASFAFLIGALSLVGIPPLNGFFSKLLLFNALLESGFYLPALVLLIASAISLVGYFRAWY 450
|
.
gi 270267422 299 S 299
Cdd:PRK12667 451 S 451
|
|
| NuoL |
COG1009 |
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ... |
15-300 |
5.47e-13 |
|
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440633 [Multi-domain] Cd Length: 608 Bit Score: 69.80 E-value: 5.47e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270267422 15 MGPMITM-LSPNLFVMWIGLEMNLLA---LIPLmmNNSNPRSTEAATKYFLTQATASMILLLSILMNFKQLGIWTF---- 86
Cdd:COG1009 121 MAAMLGLvLSDNLLLLFVFWELVGLCsylLIGF--WYEKPSARRAARKAFLVTRVGDLGLLLGILLLGAIAGTLNFsell 198
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270267422 87 -QPETNNTIMTMTFVSLAI------KLGLAPFHSWLPE-----------------VTQGVKLsvgfilltwqkVAPLSIL 142
Cdd:COG1009 199 aAAPTILSSPLLTLILLLLllgafgKSAQFPLHFWLPDamegptpvsallhaatmVKAGVYL-----------LARLSPL 267
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270267422 143 FQFHELISPNLLITSAIiSVLIGAWNGLNQTQTRKILAYSSIAHMGWMISILpynpSLTTLNLIIYIIMTTPLF------ 216
Cdd:COG1009 268 FALSPVWLTVVAIIGAI-TALFAALIALAQTDIKRVLAYSTVSQLGYMFLAL----GVGAYVAALFHLLTHAFFkallfl 342
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270267422 217 ---IIFHAHSFTSISSMSLMWNKMPMALPMVSLILLSTGGLPPLTGFLPKWAIITELMKNNGL-PLATLMAM-TALINLF 291
Cdd:COG1009 343 gagSVIHATGTRDIRKMGGLRKKMPITAITFLIGALSLAGIPPFAGFFSKEAILEAALEAGGLgPLLLAVALlGAFLTAF 422
|
....*....
gi 270267422 292 FYTRLIYST 300
Cdd:COG1009 423 YSFRLFFLV 431
|
|
| PRK08376 |
PRK08376 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
5-299 |
6.40e-11 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 236252 [Multi-domain] Cd Length: 521 Bit Score: 63.19 E-value: 6.40e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270267422 5 TLTIIYSTIIMGPMITMLSPNLFVMwigLEMNLLALIPLM-MNNSNPRSTEAATKYFLTQATASMILLLSILMNFKQLGI 83
Cdd:PRK08376 125 TLILLLELGMLGMAITGDLFNFFVF---LEIMSIASYALVaFRNDTWEAIEAGIKYMFVGSLASSMVLLGIALLYGQYGT 201
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270267422 84 WTFQPETNNTIMTMT----------FVSLAIKLGLAPFHSWLPEVTQGVKLSVGFILLTwQKVAPLSILFQ-----FHEL 148
Cdd:PRK08376 202 LNMAYLAVKMSENPTvvakialalfIAGLAMKSGAVPVHMWLPDAYPAAPSSISAMLLV-IKQAGLYALARvlfsiYGPA 280
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270267422 149 ISPN----LLITSAIISVLIGAWNGLNQTQTRKILAYSSIAHMGWM-----ISILPYNPSLTT-----------LNLIIY 208
Cdd:PRK08376 281 INLAtvgwVIIILGCLTMFVGVAMAVVQKDVKRLLAYHSVSQIGYMllglgVGLAALGDPAMAsygeialaggiYHIVNH 360
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270267422 209 IIMTTPLFI----IFHAHSFTSISSMSLMWNKMPMALPMVSLILLSTGGLPPLTGFLPKWAIITELMKNNglPLATLMAM 284
Cdd:PRK08376 361 ALYKALLFLtagaVIYETGTRNLNELGGLARTMPKTTIAFLIGAAAIVGLPPFNGFASKWLIYESSALFN--PILGVIAM 438
|
330
....*....|....*.
gi 270267422 285 -TALINLFFYTRLIYS 299
Cdd:PRK08376 439 iGSVLTLASFVKVFHT 454
|
|
| PRK12663 |
PRK12663 |
Na+/H+ antiporter subunit D; |
25-296 |
1.09e-10 |
|
Na+/H+ antiporter subunit D;
Pssm-ID: 237163 [Multi-domain] Cd Length: 497 Bit Score: 62.66 E-value: 1.09e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270267422 25 NLFVMWiglEMNLLALIPLMMNNSNPRSTEAATKYFLTQATASMILLLSILMNFKQLGIWTF--------QPETNNTIMT 96
Cdd:PRK12663 132 NLYVWF---EVMLIASFVLITLGQEREQLRGAIKYVVLNLIGSWLFLLGIGLLYGTFGTLNMahiamrlnDMGDTATLTT 208
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270267422 97 MT---FVSLAIKLGLAPFHsWLPEV--TQGVKLSVGFI-LLTwqKVAP------LSILFQFHELISPNLLITSAIISVLI 164
Cdd:PRK12663 209 IAllfLLAFGMKAALFPFM-WLPAAyhTPNTEVAALFAaLLT--KVGIyalirvFTLLFPQERELLHPLLATMAAITMVI 285
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270267422 165 GAWNGLNQTQTRKILAYSSIAHMGWMISILPYNPSLTTLNLIIY-----IIMTTPLFIIFHAHSFT---SISSMSLMWNK 236
Cdd:PRK12663 286 GALGALAYKDIRRIAGYQVISSIGFILLGLALGTPAGINGAIFYlvhdmVVKTALFLIAGSLVRLTgyrSLQYLGGLYRK 365
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|
gi 270267422 237 MPMALPMVSLILLSTGGLPPLTGFLPKWAIITELMKNNGLPLATLMAMTALINLFFYTRL 296
Cdd:PRK12663 366 EPLFGALFLILIFAIGGLPPFSGFWGKVLLVQGALDNGAYILLALMLITSLITMYSLFRI 425
|
|
| PRK12650 |
PRK12650 |
DUF4040 family protein; |
12-297 |
1.69e-10 |
|
DUF4040 family protein;
Pssm-ID: 237158 [Multi-domain] Cd Length: 962 Bit Score: 62.37 E-value: 1.69e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270267422 12 TIIMGPMITM-LSPNLFVMWIGLEMNLLALIpLMMNNSNPRSTEAATKYFLTQATASMILLLSILMNFKQLG-------- 82
Cdd:PRK12650 117 TAFMAAMLLLvLADDVVVLFVAWELVSLASF-FLIARSGSGGEAGSIRTLILTFFGGLTLLAAVAIAATQTGttslsgil 195
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270267422 83 ---IWTFQPETNNTIMTMTFVSLAIKLGLAPFHSWLPEVTQGVKLSVGFILLTWQKVAPLSILFQFHELISPN-----LL 154
Cdd:PRK12650 196 hsdVWAEKPGLTTVVAVLIAVAAFTKSAQFPFHFWLPEAMAAITPVSAFLHAAAVVKAGIYLLLRFSPVFHDVavwnwLL 275
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270267422 155 ITSAIISVLIGAWNGLNQTQTRKILAYSSIAHMGWMISIL----PYNPSLTTLNLIIYIIMTTPLF----IIFHAHSFTS 226
Cdd:PRK12650 276 IIVGMITALMGAVFAVQKTDLKKLTAYSTVSQLGWIVATIgvgtPFALTAAVVHTLAHALFKSSLFmligVVDHQAGTRD 355
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 270267422 227 ISSMSLMWNKMPMALPMVSLILLSTGGLPPLTGFLPKWAIITELMK----NNGLPLATL-MAMTALINLFFYTRLI 297
Cdd:PRK12650 356 IRRLGSLWRRMPFTFVSVTIAALSMAAVPPLFGFVSKEGMLTAFLEapggNAGVVLLLVgAALGAVFTFAYSARLV 431
|
|
| PRK05846 |
PRK05846 |
NADH:ubiquinone oxidoreductase subunit M; Reviewed |
55-288 |
3.77e-10 |
|
NADH:ubiquinone oxidoreductase subunit M; Reviewed
Pssm-ID: 235622 [Multi-domain] Cd Length: 497 Bit Score: 60.99 E-value: 3.77e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270267422 55 AATKYFLTQATASMILLLSIL----MNFKQLGiwTFQ-PETNNTIMTMT---------FVSLAIKLGLAPFHSWLPEV-- 118
Cdd:PRK05846 162 AATKFFLYTLLGSLLMLVAIIylvvVYYNATG--TFDiADLLNLPLPPGvqywlflafFIAFAVKMPMFPLHTWLPDAhv 239
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270267422 119 ---TQGVKLSVGfILLtwqKVA---------PLSILfQFHELISpnLLITSAIISVLIGAWNGLNQTQTRKILAYSSIAH 186
Cdd:PRK05846 240 qapTAGSVLLAG-ILL---KMGaygllrfslPLFPD-ASHEFAP--IIITLGVIAIIYGALVALAQTDIKKLIAYSSISH 312
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270267422 187 MGW-MISILpynpSLTTLNL---IIYII----MTTPLFIIF-----HAHSfTSISSMSLMWNKMPMaLPMVSLI-LLSTG 252
Cdd:PRK05846 313 MGFvTLGIF----AGNQLGIqgaIFQMIshglSSAALFLLVgvlydRLHT-RDIADYGGLAKVMPV-LAAFFLFfAMASL 386
|
250 260 270
....*....|....*....|....*....|....*.
gi 270267422 253 GLPPLTGFLPKWAIITELMKNNglPLATLMAMTALI 288
Cdd:PRK05846 387 GLPGTSGFVGEFLILLGSFQVN--PVIAFIATTGLI 420
|
|
| PRK12665 |
PRK12665 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
10-293 |
6.74e-10 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 237165 [Multi-domain] Cd Length: 521 Bit Score: 59.98 E-value: 6.74e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270267422 10 YSTIIMGPMITMLSPNLFVMWIGLEMNLLALIPLMMNNSNPRSTEAATKYFLTQATASMILLLSILM--------NFKQL 81
Cdd:PRK12665 117 YLILVAGVSNAFLAGDLFNLYVGFEILLVASYVLLTLGATAARVRAGVTYVMVSMVSSLLFLIGIALvyaatgtlNMADL 196
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270267422 82 GIW--TFQPETNNTIMTMTFVSLAIKLGLAPFHSWLPE--------VTqgvklSVGFILLTwqKVAPLSILfQFHELISP 151
Cdd:PRK12665 197 AVRldELPSGTRTALFAVLLVAFGIKAAVFPLSFWLPDsyptapapVT-----AVFAGLLT--KVGVYAII-RTHTLLFP 268
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270267422 152 -----NLLITSAIISVLIGAWNGLNQTQTRKILAYSSIAHMGWMISILPYNPSLTTLNLIIY----IIMTTPLFIIF--- 219
Cdd:PRK12665 269 gggldTLLMVVALLTMVVGILGAIAQSDIKRLLSFTLVSHIGYMVFGIALSTVAGLSGAIYYvahhITVQTTLFLVVgli 348
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270267422 220 --HAHSfTSISSMSLMWNKMPMALPMVSLILLSTGGLPPLTGFLPKWAIItELMKNNGLPLA-------------TLMAM 284
Cdd:PRK12665 349 erQAGS-SSLRRLGGLAKASPLLAVLFFVPALNLGGIPPFSGFIGKVALL-EAGAEDGTWLAwalvaggvvtsllTLYAV 426
|
....*....
gi 270267422 285 TALINLFFY 293
Cdd:PRK12665 427 ARVWTKAFW 435
|
|
| PRK06458 |
PRK06458 |
hydrogenase 4 subunit F; Validated |
18-283 |
2.31e-09 |
|
hydrogenase 4 subunit F; Validated
Pssm-ID: 235805 [Multi-domain] Cd Length: 490 Bit Score: 58.40 E-value: 2.31e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270267422 18 MITML----SPNLFVMWIGLEMNLLALIPLMMNNSNPRSTEAATKYFL------TQATASMILLLSILMNFKQLG----I 83
Cdd:PRK06458 118 LFTMLlaltSNNLGLMWVAIEATTLSSALLVGIYRTRASLEAAWKYIIicsvgvAFALFGTILVYANAATVMGDGemaiL 197
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270267422 84 WT----FQPETNNTIMTMTFVSLAI----KLGLAPFHSWLPE-----------VTQGVKLSVG-FILLTWQKVAPLSIlf 143
Cdd:PRK06458 198 WTellkHASLLDPTLMKLAFVFLLIgfgtKVGLFPMHAWLPDahseapspvsaLLSGVLLNVAlYAVLRYYILIDAAI-- 275
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270267422 144 qfHELISPNLLITSAIISVLIGAWNGLNQTQTRKILAYSSIAHMGWMISILPYNPSLTTLNLIIYIIMttplfiifhaHS 223
Cdd:PRK06458 276 --GSDFPGRLLLIFGLLSVLVAAFFLLRQRDIKRLFAYSSIEHMGLIAFALGIGGPLGIFAALLHMLN----------HS 343
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 270267422 224 FT------------------SISSMSLMWNKMPMALPMVSLILLSTGGLPPLTGFLPKWAIITELMKNNGLPLATLMA 283
Cdd:PRK06458 344 LTksaiffasgnvlqkygtrDINVIRGLLKVSPLTGWGLMLGALAIAGMPPFGVFISEFLILTAGLARGPLLIAILLL 421
|
|
| PRK06473 |
PRK06473 |
NADH-quinone oxidoreductase subunit M; |
22-191 |
3.21e-09 |
|
NADH-quinone oxidoreductase subunit M;
Pssm-ID: 235810 [Multi-domain] Cd Length: 500 Bit Score: 58.17 E-value: 3.21e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270267422 22 LSPNLFVMWIGLEMNLLALIPLMMNNSNPRSTEAATKYFLTQATASMILLLSILMNFKQLGIWTFQPETNNT-------- 93
Cdd:PRK06473 125 LAQDLLLFFLFYELELIPLYLLIAIWGGQRRGYAATKFLLYTAISGILILVSFLGLVWLSGASSFDYEPLRShtlplstq 204
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270267422 94 --IMTMTFVSLAIKLGLAPFHSWLPEV--------------------TQG-VKLSVGFILLTWQKVAPLsilfqfhelis 150
Cdd:PRK06473 205 llLLAPILVGFGIKIPLVPFHTWLPDAhveastpvsvllagvllklgTYGlLRFGVGLFPEAWVYLAPW----------- 273
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 270267422 151 pnlLITSAIISVLIGAWNGLNQTQTRKILAYSSIAHMGWMI 191
Cdd:PRK06473 274 ---LATWAVVSVLYGASCAIAQKDMKKMVAYSSIGHMGYIL 311
|
|
| PRK08668 |
PRK08668 |
NADH dehydrogenase subunit M; Validated |
21-293 |
3.50e-08 |
|
NADH dehydrogenase subunit M; Validated
Pssm-ID: 236332 [Multi-domain] Cd Length: 610 Bit Score: 55.00 E-value: 3.50e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270267422 21 MLSPNLFVMWIGLEMNLLALIpLMMNNSNPRSTEAATKYFLTQATASMILLLSILMNFKQLGIWTF--------QPETNN 92
Cdd:PRK08668 115 FLANDLLTLYIFWEIMTFSSF-MMVPMGKKESRKASLKYFVLSAIGAYAMLYAIFLIYAKTGTFDFadisqgliNDTSTG 193
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270267422 93 TIMTMTFVSLA---IKLGLAPFHSWLPEV-------------TQGVKLSVGFILLTWQKVAPLSILFQFHELISPNL--- 153
Cdd:PRK08668 194 FALIVFLFLLAfgvAKAGIFPLHVWAPDAyseapqsfsavlsGQLSKLGAYGFLLVLYVLPGTKLFSEFGTYRGVPLfny 273
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270267422 154 -LITSAIISVLIGAWNGLNQTQTRKILAYSSIAHMGWMISILPYNPSLTTLNLIIYII----MTTPLFIIFHAHSF---- 224
Cdd:PRK08668 274 iLAWLGNISIIVGTLMAILQEDIKKLIAYSSVANGGYILVGLGLGTSLGFAGGLFHVFnhalFKGLFFLIFAAVIYrtgt 353
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 270267422 225 TSISSMSLMWNKMPMALPMVSLILLSTGGLPPLTGFLPKWAIITELMKnNGLPLATLMAMTALINLFFY 293
Cdd:PRK08668 354 TKISEMGGLIEKMPFTFAMYLVAIISLAGIPPMSGFASKWLIFEALIS-KGMPITAFMAFFGSIGSFLY 421
|
|
| PRK06589 |
PRK06589 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
7-312 |
4.04e-08 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 235835 [Multi-domain] Cd Length: 489 Bit Score: 54.44 E-value: 4.04e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270267422 7 TIIYSTIIMGPMITMLSPNLFVMWIGLEMNLLALIPLMMNNSNPRSTEAATKYFLTQATASMILLLSILM---------N 77
Cdd:PRK06589 119 LFFFNLTILIGVLIALSSDLFTMFVCYELLTISTAFLIGHTRNNISLSGGYKYLKILMISALLLFLPAVIliytktgnlD 198
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270267422 78 FKQLGIWTFQPetnNTIMTMTFVSLAIKLGLAPFHSWLPE-----------------VTQGVKLSVGFILLTWqKVAPLS 140
Cdd:PRK06589 199 FVSGGLFSKNQ---SIILLLMFIYGIAKTAIFPVHSWLPAamvahypvsallhavivVKTGLFCIYKILLYIF-GLSYLQ 274
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270267422 141 ILFQfheliSPNLLITSAIISVLIGAWNGLNQTQTRKILAYSSIAHMGWMI---SIL-PYNPSLTTLNLIIYIIMTTPLF 216
Cdd:PRK06589 275 RIFA-----EFNWLIFIPIVSIFYSSLKALKTDNIKKILAYSTISQLSLALlsaFILtPKALGAAILHLVSHSFAKICLF 349
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270267422 217 I----IFHAHSFTSISSMSLMWNKMPMALPMVSLILLSTGGLPPLTGFLPKWAIITELMKNNGLPLATLMAM----TALI 288
Cdd:PRK06589 350 YsmgsIYSLKKEDQVDKLHGTSKSFPLISFIISISSLSLIGIPIFSGFISKFLILLAASEQNQPWLSIIVMLvviaSSIL 429
|
330 340
....*....|....*....|....
gi 270267422 289 NLFFYTRLIYSTSLTTFPSNNNSK 312
Cdd:PRK06589 430 SALYLLKILSSIYKPSLSENSFIT 453
|
|
| PRK12662 |
PRK12662 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
90-274 |
6.19e-08 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 183662 [Multi-domain] Cd Length: 492 Bit Score: 53.97 E-value: 6.19e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270267422 90 TNNTI---MTMTFVSLAIKLGLAPFHSWLpevTQGVKLSVGFILL----TWQKVAPLSIL----------FQFHELISPN 152
Cdd:PRK12662 204 TNRAIqigVLFIMVGLFIKAALFPFHKWL---IQAYSEAPSFISVffsgTSTKVMIYLIIrivydvfkanFVFTTLPFNN 280
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270267422 153 LLITSAIISVLIGAWNGLNQTQTRKILAYSSIAHMGWMISILPYNPSLTTLNLIIYII----MTTPLFIIFHAHSF---- 224
Cdd:PRK12662 281 VFMILAALAIVFGSVLAILSKDIKRIFAYSSISHIGYIILAVSLNTYYGLAAAVAYIVnhsiVKSALFMVSGSISYhfgt 360
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 270267422 225 TSISSMSLMWNKMPMALPMVSLILLSTGGLPPLTGFLPKWAIITELMKNN 274
Cdd:PRK12662 361 TKLEDCLNLWKSMPKITLAFVLLSLSLIGMPPTSGFVAKWYILDAFIKSN 410
|
|
| PRK08667 |
PRK08667 |
hydrogenase membrane subunit; Validated |
35-270 |
1.83e-07 |
|
hydrogenase membrane subunit; Validated
Pssm-ID: 236331 [Multi-domain] Cd Length: 644 Bit Score: 52.81 E-value: 1.83e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270267422 35 MNLLALIPLMMNNSNPRSTEAATKYFLTQATASMILLLSILMNFKQLGIWTFQP-ETNNTIMTMTFVSL----AIKLGLA 109
Cdd:PRK08667 143 MALSSFFLVMNDYQEEETQRAGIFYFVMTQLSTVFLMLGIIVLFIQTGSFELSPlGASAGILSLVFLLLflgfGIKAGII 222
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270267422 110 PFHSWLPEVTQGVKLSVGFILL-TWQKVAPLSILFQFHELISPNL-----LITSAIISVLIGAWNGLNQTQTRKILAYSS 183
Cdd:PRK08667 223 PFHKWLPYAHPASPSNVSALMSgVMLKVAVYGLVRFLMDVLSPELwwgvlILLAGSISALLGVIYALKEHDLKGLLAYSS 302
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270267422 184 IAHMG--------WMISILPYNPSLTTLNL-------IIYIIMTTPLFI----IFHAHSFTSISSMSLMWNKMPMALPMV 244
Cdd:PRK08667 303 IENIGiilmgiglYVIFGVYGLDTLALLALggalfhsLNHALFKSLLFLtagsVVHATGTRNIEKMGGLVKLMPYTSALF 382
|
250 260
....*....|....*....|....*.
gi 270267422 245 SLILLSTGGLPPLTGFLPKWAIITEL 270
Cdd:PRK08667 383 LVGAVSIAALPPFNGFASELLLYESF 408
|
|
| PRK08377 |
PRK08377 |
NADH dehydrogenase subunit N; Validated |
8-298 |
3.20e-07 |
|
NADH dehydrogenase subunit N; Validated
Pssm-ID: 181406 [Multi-domain] Cd Length: 494 Bit Score: 51.69 E-value: 3.20e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270267422 8 IIYSTIIMGPMITMLSPNLFVMWIGLEMNLLALIPLMMNNSNPRSTEAATKYFLTQATASMILLLSILMNFKQLG----- 82
Cdd:PRK08377 112 MLFLLLMLGATGMIATGDIFNLFVFMEITAITAYALTAYNKTGEAAEASMKYIVLGGIGSSFFLIGVALIYGATGtlnma 191
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270267422 83 -----IWTFQPETNNTIMTMTFVSLAIKLGLAPFHSWLPEVTQGVK--LSVGF--------------ILLTWQKVAPLSI 141
Cdd:PRK08377 192 hiaqlAGTIDPTVAQVGLALLIFGLAVEAELFPLNAWAPDAYQAAPhpITVMFsafvvkaglyamarILYLMQNANGWSS 271
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270267422 142 LFQfhelispnLLITSAIISVLIGAWNGLNQTQTRKILAYSSIAHMGWMISILPYNPSL----TTLNLIIYIIMTTPLFI 217
Cdd:PRK08377 272 VLK--------LVIIMATLTVFFAELSALRQKNVKRMIAYSSIGQVGMIALALALGTQAgvdaGVFHMINHAIVKALLFL 343
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270267422 218 ----IFHAHSFTSISSMSLMWNKMPMALPMVSLILLSTGGLPPLTGFLPKWAIITELMKNNGLPLATLMAMTALINLFFY 293
Cdd:PRK08377 344 avgyVGITLGGTEIEKFEGLGKRMPLTALALTIGALSTVGIPLFNVFWSKFRIILAGLSAGYTWPVALVLGASVVEAVYY 423
|
....*
gi 270267422 294 TRLIY 298
Cdd:PRK08377 424 FRLIH 428
|
|
| ND4 |
MTH00217 |
NADH dehydrogenase subunit 4; Provisional |
54-188 |
7.01e-07 |
|
NADH dehydrogenase subunit 4; Provisional
Pssm-ID: 214462 [Multi-domain] Cd Length: 482 Bit Score: 50.82 E-value: 7.01e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270267422 54 EAATKYFLTQATASMILLLSILMNFKQLGIWTFQP--------ETNNTIMTMTFVSLAIKLGLAPFHSWLPE-------- 117
Cdd:MTH00217 160 QASYYFFFYTFIGSVFMLLGIFTLYSYAGTTDYQAlcclkiekELQYFIFLGFFLSLAIKIPKIPFHIWLPQahveapva 239
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 270267422 118 ---VTQGVKLSV---GFILLTWqkvaplSILFQFHELISPnLLITSAIISVLIGAWNGLNQTQTRKILAYSSIAHMG 188
Cdd:MTH00217 240 gsvILAGVLLKLggyGFIRFSW------PLLPEASEYFSP-LIQTLSLLAIIYGSLTTCRQVDLKRIIAYSSVAHMG 309
|
|
| PRK12561 |
PRK12561 |
NAD(P)H-quinone oxidoreductase subunit 4; Provisional |
26-188 |
2.11e-06 |
|
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
Pssm-ID: 237137 [Multi-domain] Cd Length: 504 Bit Score: 49.26 E-value: 2.11e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270267422 26 LFVMWiglEMNLLALIPLMMNNSNPRSTEAATKYFLTQATASMILLLSIL----------MNFKQLGIWTFqPETNNTIM 95
Cdd:PRK12561 112 FFLMW---ELELVPVYLLISIWGGQKRLYAATKFILYTALASIFILVAGLalalsgdtftFDLAELGAKSY-PLALELLL 187
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270267422 96 TMTF-VSLAIKLGLAPFHSWLPE-----------VTQGVKLSVG-FILLTWQkvapLSILFQFHELISPnLLITSAIISV 162
Cdd:PRK12561 188 YAGFlIAFGVKLPIFPLHTWLPDahgeasapvsmILAGVLLKMGgYALIRFN----VQMLPDAHVYFAP-ALAILGVVNI 262
|
170 180
....*....|....*....|....*.
gi 270267422 163 LIGAWNGLNQTQTRKILAYSSIAHMG 188
Cdd:PRK12561 263 IYGALNAFAQDNVKRRLAYSSVSHMG 288
|
|
| NADH_dehy_S2_C |
pfam06444 |
NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region ... |
291-334 |
3.20e-06 |
|
NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region specific to the eukaryotic NADH dehydrogenase subunit 2 protein and is found in conjunction with pfam00361.
Pssm-ID: 461914 [Multi-domain] Cd Length: 51 Bit Score: 43.79 E-value: 3.20e-06
10 20 30 40
....*....|....*....|....*....|....*....|....
gi 270267422 291 FFYTRLIYSTSLTTFPSNNNSKMYMHQNHTKNNSVLSPTMIIST 334
Cdd:pfam06444 1 FFYLRLSYSTTLTLFPNTNNSKMKWRFNSTKNTLLLPTLTTLSI 44
|
|
| PRK08676 |
PRK08676 |
hydrogenase membrane subunit; Validated |
23-191 |
7.25e-06 |
|
hydrogenase membrane subunit; Validated
Pssm-ID: 181537 [Multi-domain] Cd Length: 485 Bit Score: 47.44 E-value: 7.25e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270267422 23 SPNLFVMWIGLEMNLLALIPLMMNNSNPRSTEAATKYFLTQATA------SMILLLSILMNFKQLGI--WT--------F 86
Cdd:PRK08676 121 SDNLALFWIFAELTTVFSAMLIAILSARENIDAALKYIFIASTAmifafiGLIFLFSLTRQALGTGTlnWTelaahaslL 200
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270267422 87 QPETNNTIMTMTFVSLAIKLGLAPFHSWLPEVTQGVKLSVGFILL-TWQKVAPLSILFQFHEL-------ISPNLLITSA 158
Cdd:PRK08676 201 SPSVLGASFLFIFIGFLAKSGLVPFHTWLPAAYAKAPSVVSALLSgTVLNIGIYGILRLSALLrqsgaaeQFSNVLIGLG 280
|
170 180 190
....*....|....*....|....*....|...
gi 270267422 159 IISVLIGAWNGLNQTQTRKILAYSSIAHMGWMI 191
Cdd:PRK08676 281 IFSIAVAAFSMLSQRNLKKLIAFSSIEHMGLML 313
|
|
| PRK12649 |
PRK12649 |
putative monovalent cation/H+ antiporter subunit A; Reviewed |
10-263 |
1.05e-05 |
|
putative monovalent cation/H+ antiporter subunit A; Reviewed
Pssm-ID: 183649 [Multi-domain] Cd Length: 789 Bit Score: 47.13 E-value: 1.05e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270267422 10 YSTIIMGPMITML----SPNLFVMWIGLEMNLLALIPLMmnNSNPRSTEAATKYFLTQATASMILLLSILMNFKQLGIWT 85
Cdd:PRK12649 116 YLLLFMGSMIGMVfsgnTIQLFIFWELTSITSFMLIGYW--RHRPESVYGATKSLLITAGGGLFMFAGFLLLHVITGTYD 193
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270267422 86 F-----QPETNNTI---------MTMTFVSLAIKLGLAPFHSWLPEVTQGVKLSVGFILLTWQKVAPLSILFQFHELISP 151
Cdd:PRK12649 194 IatilqDSELIENIkghplflitLILIFIGAAAKSAQGPFYIWLPNAMEAPTPVSAFLHSATMVKAGVYLVARIHPIFSG 273
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270267422 152 N-----LLITSAIISVLIGAWNGLNQTQTRKILAYSSIAHMGWMISILPYN----PSL----TTLNLIIYIIMTTPLF-- 216
Cdd:PRK12649 274 TeawfiLVSGTGMITMVLAGFLAFRQTDIKAILAYSTISQLAYLMTMYGYTtyhePGLgvaaATFHLLNHATFKACLFlv 353
|
250 260 270 280
....*....|....*....|....*....|....*....|....*....
gi 270267422 217 --IIFHAHSFTSISSMSLMWNKMPMALPMVSLILLSTGGLPPLTGFLPK 263
Cdd:PRK12649 354 agIVAHEAATRDIRKLGGLRKEMPITFIVASIAALAMAGIPPLNGFLSK 402
|
|
| PRK07363 |
PRK07363 |
NADH-quinone oxidoreductase subunit M; |
21-191 |
2.48e-05 |
|
NADH-quinone oxidoreductase subunit M;
Pssm-ID: 180945 [Multi-domain] Cd Length: 501 Bit Score: 45.86 E-value: 2.48e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270267422 21 MLSPNLFVMWIGLEMNLLALIPLMMNNSNPRSTEAATKYFLTQATASMILLLSIL----------MNFKQLGIWTFQPET 90
Cdd:PRK07363 124 LLAQNLLLFFLFYELELIPFYLLIAIWGGEKRGYASIKFLIYTAVSGLLVLAAFLgivwlsgstsFDYDAISTQNLSLNT 203
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270267422 91 NNTIMTMTFVSLAIKLGLAPFHSWLP----EVTQGVKLSVGFILLTWQKVA----PLSILFQFHELISPNLLITSAIiSV 162
Cdd:PRK07363 204 QLILLTGLLLGFGIKIPLVPLHTWLPdaytEASPAVAILLGGVLAKLGTYGllrfGLQLFPQTWSLVAPGLAIIGTI-SV 282
|
170 180
....*....|....*....|....*....
gi 270267422 163 LIGAWNGLNQTQTRKILAYSSIAHMGWMI 191
Cdd:PRK07363 283 IYGALSAIAQKDIKRMVAYSSIGHMGYIL 311
|
|
| ND4 |
MTH00226 |
NADH dehydrogenase subunit 4; Provisional |
99-314 |
3.12e-05 |
|
NADH dehydrogenase subunit 4; Provisional
Pssm-ID: 214466 [Multi-domain] Cd Length: 505 Bit Score: 45.68 E-value: 3.12e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270267422 99 FVSLAIKLGLAPFHSWLPEV-----TQGVKLSVGfILLTWQKVAPLSILFQFHELISPNL---LITSAIISVLIGAWNGL 170
Cdd:MTH00226 237 FLAMAVKIPIFPFHIWLPKAhveapVAGSVLLAG-ILLKLGGYGLVRLSWPILPLGAQNLapaVIAMGIVGIVYGSFATC 315
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270267422 171 NQTQTRKILAYSSIAHMGwMISILPYNPSLTTLNLIIYI-----IMTTPLF----IIFHAHSFTSISSMSLMWNKMPMAL 241
Cdd:MTH00226 316 RQIDVKRLVAYSSVAHMG-LVSITLVTHDIIGLTGSIFImlahgIVSSLLFilvtILYDRHHTRLIKYYRGLSITMPIWG 394
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 270267422 242 PMVSLILLSTGGLPPLTGFLPKWAIITELMKNN---GLPLATLMAMTALINLFFYTRLIY--STSLTTFPSNNNSKMY 314
Cdd:MTH00226 395 TIMIVTSLANVAVPPSGNFIGEYLSILSSFNWNpiiGVFVCSGVILSAVYSFYFANRVTFgaPGNLITFARDVNRREF 472
|
|
| PRK02546 |
PRK02546 |
NAD(P)H-quinone oxidoreductase subunit 4; Provisional |
55-271 |
3.17e-05 |
|
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
Pssm-ID: 235050 [Multi-domain] Cd Length: 525 Bit Score: 45.47 E-value: 3.17e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270267422 55 AATKYFLTQATASMILLLSIL----------MNFKQLGIWTFQPETNNTIMTMTFVSLAIKLGLAPFHSWLP----EVTQ 120
Cdd:PRK02546 166 AATKFILYTAGSSLFILLAALamafygdtptFDMTALAAKDFGLGFQLLCYAGLLIAYGVKLPIVPLHTWLPdahgEATA 245
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270267422 121 GVKLSVGFILLTWQKVAPL----SILFQFHELISPnLLITSAIISVLIGAWNGLNQTQTRKILAYSSIAHMGWMI----S 192
Cdd:PRK02546 246 PVHMLLAGILLKMGGYALLrmnaGMLPDAHAQFAP-LLIVLGVVNIIYAALTSFAQRNLKRKIAYSSISHMGFVLigigS 324
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270267422 193 ILPYNPSLTTLNLIIYIIMTTPLFIIFHA-----HSFTsISSMSLMWNKMPMALPMVSLILLSTGGLPPLTGFlpkwaiI 267
Cdd:PRK02546 325 FTDLGTSGAMLQMISHGLIGASLFFLVGAtydrtHTLM-LDEMGGVGQKMRKMFAMWTACSLASLALPGMSGF------V 397
|
....
gi 270267422 268 TELM 271
Cdd:PRK02546 398 AELM 401
|
|
| ND4 |
MTH00204 |
NADH dehydrogenase subunit 4; Provisional |
55-188 |
3.56e-05 |
|
NADH dehydrogenase subunit 4; Provisional
Pssm-ID: 164750 [Multi-domain] Cd Length: 485 Bit Score: 45.44 E-value: 3.56e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270267422 55 AATKYFLTQATASMILLLSILMNFKQLGIWTFQPETNNTIMTMT--------FVSLAIKLGLAPFHSWLPE--VTQGVKL 124
Cdd:MTH00204 164 ASYYFFFYTFAGSVFMLLGIFQLYSITGTTDYQILLNIKLPLSIqkwllvgfFLSLAVKIPQIPFHIWLPQahVEAPVAG 243
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 270267422 125 SV------------GFILLTWqkvaplSILFQFHELISPnLLITSAIISVLIGAWNGLNQTQTRKILAYSSIAHMG 188
Cdd:MTH00204 244 SVilagillklggyGFLRFSW------PLFPAASEYFAP-LIVMLSVIAVIYGSLTTCRQVDFKRLIAYSSVAHMG 312
|
|
| ND5 |
MTH00020 |
NADH dehydrogenase subunit 5; Reviewed |
55-312 |
6.56e-05 |
|
NADH dehydrogenase subunit 5; Reviewed
Pssm-ID: 214400 [Multi-domain] Cd Length: 610 Bit Score: 44.68 E-value: 6.56e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270267422 55 AATKYFLTQATASMILLLSILMNFKQLGIWTFQPETNNTIMT----MTFVSLAIKLGLAP------FHSWLPEVTQGVKL 124
Cdd:MTH00020 163 AAIKAMLVNRVGDIGLLLAMFLLWDRFGSLDFSSVFNMVVSApssdITLICLFLFIGAVGksaqlgLHTWLPDAMEGPTP 242
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270267422 125 SVGFILLTWQKVAPLSILFQFHELI--SPNLLITSAII---SVLIGAWNGLNQTQTRKILAYSSIAHMGWMISILP-YNP 198
Cdd:MTH00020 243 VSALIHAATMVTAGVFLLIRSSPLFeqAPLALIIVTIVgslTVFFAATVGLVQNDLKKVIAYSTCSQLGYMVVACGlSHY 322
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270267422 199 SLTTLNLIIYIIMTTPLFI----IFHAHS-FTSISSMSLMWNKMPMALPMVSLILLSTGGLPPLTGFLPKWAIITELMKN 273
Cdd:MTH00020 323 SISLFHLMNHAFFKALLFLsagsVIHALSdEQDMRKMGGLISFLPLTYIFFLIGSLSLMGFPYLTGFYSKDLILELAFGQ 402
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 270267422 274 NGLPLAT-LMAMTALINLFFYTRLIYstslTTFPSNNNSK 312
Cdd:MTH00020 403 YYLIFAYwLGCFSALLTAFYSIRLIY----LTFLSNTNLK 438
|
|
| PRK12644 |
PRK12644 |
putative monovalent cation/H+ antiporter subunit A; Reviewed |
105-288 |
2.74e-04 |
|
putative monovalent cation/H+ antiporter subunit A; Reviewed
Pssm-ID: 237154 [Multi-domain] Cd Length: 965 Bit Score: 42.99 E-value: 2.74e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270267422 105 KLGLAPFHSWLPE-----------------VTQGVKLsvgfilltwqkVAPLSILFQFHELISPnLLITSAIISVLIGAW 167
Cdd:PRK12644 216 KSAIVPFHFWLPGamaaptpvsaylhaaamVKAGIYL-----------VARLAPGFADVPVWRP-TVLVLGLATMLLGGW 283
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270267422 168 NGLNQTQTRKILAYSSIAHMGWMISILPYNPSLTTLN----LIIYIIMTTPLF----IIFHAHSFTSISSMSLMWNKMPM 239
Cdd:PRK12644 284 RALRQHDLKLILAYGTVSQLGFLTVLVGIGTRDAALAglamLLAHALFKAALFlvvgIIDHSTGTRDIRKLSGLGRRQPV 363
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 270267422 240 ALPMVSLILLSTGGLPPLTGFLPKWAIITELMKNNGLPLATLMAMTALI 288
Cdd:PRK12644 364 LAVVAALAAASMAGLPPLLGFVAKEAALEAVLHDGALGPAGPVVLAGIV 412
|
|
| PRK12646 |
PRK12646 |
DUF4040 family protein; |
9-288 |
3.13e-04 |
|
DUF4040 family protein;
Pssm-ID: 183646 [Multi-domain] Cd Length: 800 Bit Score: 42.43 E-value: 3.13e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270267422 9 IYSTIIMGPMI-TMLSPNLFVMWIGLEMNLLA---LIPLMMNNSNprSTEAATKYFLTQATASMILLLSILMNFKQLGIW 84
Cdd:PRK12646 114 FYLTLFMFSMIgIVLSDNTILMYVFWELTSVSsflLISYWYNNGD--SQFGAIQSFMITVFGGLALLVGFIMLYIMTGTN 191
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270267422 85 TFQPETNNT-----------IMTMTFVSLAIKLGLAPFHSWLPEVTQGVKLSVGFILLTWQKVAPLSILFQFHELISPN- 152
Cdd:PRK12646 192 NITEILGQAdhiknhglfipMIFMFLLGAFTKSAQFPFHIWLPRAMAAPTPVSAYLHSATMVKAGIFLLFRFTPLLGLSn 271
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270267422 153 ----LLITSAIISVLIGAWNGLNQTQTRKILAYSSIAHMGWMISILPYNPSLTT------------------LNLIIYII 210
Cdd:PRK12646 272 myiyIVTFVGLITMLFGSITALKQWDLKGILAYSTISQLGMIMAMVGIGGGYAQhqqdaiasiyvfvlfaalFHLMNHAI 351
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270267422 211 MTTPLF----IIFHAHSFTSISSMSLMWNKMPMALPMVSLILLSTGGLPPLTGFLPKWAIITELMKNNGLPLATLMAMTA 286
Cdd:PRK12646 352 FKCALFmgvgIIDHEAGTRDIRILSGMRQLFPKMNLVMTIAALSMAGVPFLNGFLSKEMFLDALTQTGQLSQFSLISMII 431
|
..
gi 270267422 287 LI 288
Cdd:PRK12646 432 IV 433
|
|
| PRK12668 |
PRK12668 |
Na(+)/H(+) antiporter subunit D; |
26-191 |
3.92e-04 |
|
Na(+)/H(+) antiporter subunit D;
Pssm-ID: 237168 [Multi-domain] Cd Length: 581 Bit Score: 42.19 E-value: 3.92e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270267422 26 LFVMWiglEMNLLALIPLMMNNSNPRSTEAATKYFLTQATASMILLLSILMNFKQLGIWTFQP--ETNNTIMTMTFVSLA 103
Cdd:PRK12668 118 LFVFW---ELMAFTSTFLVWARGTKAAVRAGFRYLLVHVLGGVLLLAGILLHYAETGSFAFGAiaGLGGTAAWLILIGFG 194
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270267422 104 IKLGLAPFHSWLPE------VTQGVKLSVgfiLLTWQKVAPLSILFQFHElispnLLITSAIISVLIGAWNGLNQTQTRK 177
Cdd:PRK12668 195 VNAAFPPLHAWLPDaypeatVTGSVFLSA---FTTKTAVYALARAFPGTE-----LLIYIGAAMAVYGVFFALLENDLRR 266
|
170
....*....|....
gi 270267422 178 ILAYSSIAHMGWMI 191
Cdd:PRK12668 267 LLSYHIVSQVGYMV 280
|
|
| ndhD |
CHL00011 |
NADH dehydrogenase subunit 4 |
27-191 |
2.63e-03 |
|
NADH dehydrogenase subunit 4
Pssm-ID: 176954 [Multi-domain] Cd Length: 498 Bit Score: 39.54 E-value: 2.63e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270267422 27 FVMWiglEMNLLALIPLMMNNSNPRSTEAATKYFLTQATASMILLLSIL-MNFKQLGIWTFQPETNNT----------IM 95
Cdd:CHL00011 138 FIMW---ELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLIGVLgMGLYGSNEPTLNFETLANqsypvaleilFY 214
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270267422 96 TMTFVSLAIKLGLAPFHSWLPEvTQG------VKLSVGfILLTWQKVAPLSI----LFQFHELISPNLLITSAIiSVLIG 165
Cdd:CHL00011 215 IGFLIAYAVKLPIIPLHTWLPD-THGeahystCMLLAG-ILLKMGAYGLIRInmelLPHAHSIFSPWLVIVGAI-QIIYA 291
|
170 180
....*....|....*....|....*.
gi 270267422 166 AWNGLNQTQTRKILAYSSIAHMGWMI 191
Cdd:CHL00011 292 ASTSLGQRNLKKRIAYSSVSHMGFII 317
|
|
| PRK08601 |
PRK08601 |
NADH dehydrogenase subunit 5; Validated |
19-191 |
4.00e-03 |
|
NADH dehydrogenase subunit 5; Validated
Pssm-ID: 236310 [Multi-domain] Cd Length: 509 Bit Score: 38.86 E-value: 4.00e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270267422 19 ITMLSPNLFVMWIGLEMNLLALIPLMMNNSNPRSTEAATKYFLTQATASMI-LLLSILMNFKQLGIWTF-QPETNNTIMT 96
Cdd:PRK08601 118 LAWLSGDLRLMALCWGATLLGLTLLIGLNKGWKVAREAAKISGMLFLISWLaLALAIVWLFIATGEWQLtSVLSNENLAQ 197
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270267422 97 M-----TFVSLAIKL------GLAPFHSWLPE----------VTQGVKLSVGFILLTwqKVAPLsilfqFHELISPNLLI 155
Cdd:PRK08601 198 LgtwekTGINLLLILavmipaAQWPFQRWLIEsavaptpvsaIMHAGLVNAGGIMLT--RFSPL-----FHDDIAQILLL 270
|
170 180 190
....*....|....*....|....*....|....*.
gi 270267422 156 TSAIISVLIGAWNGLNQTQTRKILAYSSIAHMGWMI 191
Cdd:PRK08601 271 IFASISVLIGTGISLVQVDYKRQLVGSTMAQMGFML 306
|
|
| PRK12647 |
PRK12647 |
putative monovalent cation/H+ antiporter subunit A; Reviewed |
153-286 |
4.67e-03 |
|
putative monovalent cation/H+ antiporter subunit A; Reviewed
Pssm-ID: 237156 [Multi-domain] Cd Length: 761 Bit Score: 38.75 E-value: 4.67e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270267422 153 LLITSAIISVLIGAWNGLNQTQTRKILAYSSIAHMGWMISILPYNPSLTTLNLIIYIIMTT----PLF----IIFHAHSF 224
Cdd:PRK12647 261 ILPLFGGLTMLTGALLAVRQTDLKLILAYSTVSALGTLVMLLGLGSELAIKAAVLFLVAHSlykgALFmvagIIDHETGT 340
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 270267422 225 TSISSMSLMWNKMPMALPMVSLILLSTGGLPPLTGFLPKWAIITELMKNNGLPLATLMAMTA 286
Cdd:PRK12647 341 RDITKLGGLRRAMPITAAAALLAALSMAGLPPLFGFLAKELIYEALLEAPLWSLILTVAAVL 402
|
|
| 2a6301s01 |
TIGR00940 |
Tmonovalent cation:proton antiporter; This family of proteins constists of bacterial ... |
9-263 |
5.61e-03 |
|
Tmonovalent cation:proton antiporter; This family of proteins constists of bacterial multicomponent K+:H+ and Na+:H+ antiporters. The best characterized systems are the PhaABCDEFG system of Rhizobium meliloti which functions in pH adaptation and as a K+ efflux system and the MnhABCDEFG system of Staphylococcus aureus which functions as a Na+:H+ antiporter. [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 273353 [Multi-domain] Cd Length: 793 Bit Score: 38.67 E-value: 5.61e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270267422 9 IYSTIIMGPMI-TMLSPNLFVMWIGLEMNLLALIPLMMN-NSNPRSTEAATKYFLTQATASMILLLSILMNFKQLGIWTF 86
Cdd:TIGR00940 110 AYLLAFMGAMLgVVLSDNLILLYVFWELTSIVSFLLISYwHHRAHSRYGAQKSLTITVFGGLAMLGGLILLGKITGSFSI 189
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270267422 87 QP--ETNNTIMTMTFVSLAIKLGLA---------PFHSWLPEVTQGVKLSVGFILLTWQKVAPLSILFQFHELISPN--- 152
Cdd:TIGR00940 190 DAviASADAIRNSPLFGTAMVLVLLgaftksaqfPFHIWLPDAMEAPTPVSAYLHSATMVKAGLYLLARFTPVFAGTeaw 269
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270267422 153 --LLITSAIISVLIGAWNGLNQTQTRKILAYSSIAHMGWMISIL-------PYNP------SLTTLNLIIYII----MTT 213
Cdd:TIGR00940 270 fwIVGLAGLITLLWGSYFAIFQQDLKGILAFSTISQLGLIMVLLglgspsyHYQGddskiyALAAVAAVFHLInhatFKG 349
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....
gi 270267422 214 PLF----IIFHAHSFTSISSMSLMWNKMPMALPMVSLILLSTGGLPPLTGFLPK 263
Cdd:TIGR00940 350 SLFmaagIIDHETGTRDIRKLGGLFHIMPITFTLAMIASAAMAGVPPFNGFLSK 403
|
|
| |
