NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|26344529|dbj|BAC35915|]
View 

unnamed protein product, partial [Mus musculus]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

Name Accession Description Interval E-value
ASKHA_ATPase-like super family cl49607
ATPase-like domain of the ASKHA (Acetate and Sugar Kinases/Hsc70/Actin) superfamily; The ASKHA ...
103-196 4.04e-08

ATPase-like domain of the ASKHA (Acetate and Sugar Kinases/Hsc70/Actin) superfamily; The ASKHA superfamily, also known as actin-like ATPase domain superfamily, includes acetate and sugar kinases, heat-shock cognate 70 (Hsp70) and actin family proteins. They either function as conformational hydrolases (e.g. Hsp70, actin) that perform simple ATP hydrolysis, or as metabolite kinases (e.g. glycerol kinase) that catalyze the transfer of a phosphoryl group from ATP to their cognate substrates. Both activities depend on the presence of specific metal cations. ASKHA superfamily members share a common core fold that includes an actin-like ATPase domain consisting of two subdomains (denoted I _ II) with highly similar ribonuclease (RNase) H-like folds. The fold of each subdomain is characterized by a central five strand beta-sheet and flanking alpha-helices. The two subdomains form an active site cleft in which ATP binds at the bottom. Another common feature of ASKHA superfamily members is the coupling of phosphoryl-group transfer to conformational rearrangement, leading to domain closure. Substrate binding triggers protein motion.


The actual alignment was detected with superfamily member pfam00012:

Pssm-ID: 483947 [Multi-domain]  Cd Length: 598  Bit Score: 54.57  E-value: 4.04e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26344529   103 IETEGKMIMQDKLEKERNDAKNAVEECVYEFRDKLcGPYEKFICEQEHEKflrlLTETEDWLYEEGEDQAKQAYIDKLEE 182
Cdd:pfam00012 510 VKDAEEYAEEDKKRKERIEAKNEAEEYVYSLEKSL-EEEGDKVPEAEKSK----VESAIEWLKDELEGDDKEEIEAKTEE 584
                          90
                  ....*....|....
gi 26344529   183 LMKMGTPVKVRFQE 196
Cdd:pfam00012 585 LAQVSQKIGERMYQ 598
 
Name Accession Description Interval E-value
HSP70 pfam00012
Hsp70 protein; Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves ...
103-196 4.04e-08

Hsp70 protein; Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region.


Pssm-ID: 394970 [Multi-domain]  Cd Length: 598  Bit Score: 54.57  E-value: 4.04e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26344529   103 IETEGKMIMQDKLEKERNDAKNAVEECVYEFRDKLcGPYEKFICEQEHEKflrlLTETEDWLYEEGEDQAKQAYIDKLEE 182
Cdd:pfam00012 510 VKDAEEYAEEDKKRKERIEAKNEAEEYVYSLEKSL-EEEGDKVPEAEKSK----VESAIEWLKDELEGDDKEEIEAKTEE 584
                          90
                  ....*....|....
gi 26344529   183 LMKMGTPVKVRFQE 196
Cdd:pfam00012 585 LAQVSQKIGERMYQ 598
 
Name Accession Description Interval E-value
HSP70 pfam00012
Hsp70 protein; Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves ...
103-196 4.04e-08

Hsp70 protein; Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region.


Pssm-ID: 394970 [Multi-domain]  Cd Length: 598  Bit Score: 54.57  E-value: 4.04e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26344529   103 IETEGKMIMQDKLEKERNDAKNAVEECVYEFRDKLcGPYEKFICEQEHEKflrlLTETEDWLYEEGEDQAKQAYIDKLEE 182
Cdd:pfam00012 510 VKDAEEYAEEDKKRKERIEAKNEAEEYVYSLEKSL-EEEGDKVPEAEKSK----VESAIEWLKDELEGDDKEEIEAKTEE 584
                          90
                  ....*....|....
gi 26344529   183 LMKMGTPVKVRFQE 196
Cdd:pfam00012 585 LAQVSQKIGERMYQ 598
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH