NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|262089305|gb|ACY24526|]
View 

uncharacterized conserved protein [uncultured crenarchaeote 57a5]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
DUF6659 super family cl48522
Family of unknown function (DUF6659); This family of proteins is functionally uncharacterized. ...
 2-102 6.90e-09

Family of unknown function (DUF6659); This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria and archaea. Proteins in this family are typically between 121 and 132 amino acids in length.


The actual alignment was detected with superfamily member pfam20364:

Pssm-ID: 466513  Cd Length: 131  Bit Score: 50.06  E-value: 6.90e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 262089305    2 DYSKLCESIFNlNNDVRYVAVIDDAGLPIAGGMRGGI-----DSIMDENNEELylthtALRKSMRERFDNSMGRSRFAYV 76
Cdd:pfam20364   8 EYEARCKEMLI-DPEVRFAALLGADGELLAGGLKENInlrlnDAQMDEVCKEL-----ASRVEKRKKYDFELGRVKYSTS 81

                          90       100
                  ....*....|....*....|....*.
gi 262089305   77 EREKISILTFYMNKYILLVTMEPNIN 102
Cdd:pfam20364  82 RREHVVIMSFPVYEKVVMIVAEPNVN 107
 
Name Accession Description Interval E-value
DUF6659 pfam20364
Family of unknown function (DUF6659); This family of proteins is functionally uncharacterized. ...
 2-102 6.90e-09

Family of unknown function (DUF6659); This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria and archaea. Proteins in this family are typically between 121 and 132 amino acids in length.


Pssm-ID: 466513  Cd Length: 131  Bit Score: 50.06  E-value: 6.90e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 262089305    2 DYSKLCESIFNlNNDVRYVAVIDDAGLPIAGGMRGGI-----DSIMDENNEELylthtALRKSMRERFDNSMGRSRFAYV 76
Cdd:pfam20364   8 EYEARCKEMLI-DPEVRFAALLGADGELLAGGLKENInlrlnDAQMDEVCKEL-----ASRVEKRKKYDFELGRVKYSTS 81

                          90       100
                  ....*....|....*....|....*.
gi 262089305   77 EREKISILTFYMNKYILLVTMEPNIN 102
Cdd:pfam20364  82 RREHVVIMSFPVYEKVVMIVAEPNVN 107
 
Name Accession Description Interval E-value
DUF6659 pfam20364
Family of unknown function (DUF6659); This family of proteins is functionally uncharacterized. ...
 2-102 6.90e-09

Family of unknown function (DUF6659); This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria and archaea. Proteins in this family are typically between 121 and 132 amino acids in length.


Pssm-ID: 466513  Cd Length: 131  Bit Score: 50.06  E-value: 6.90e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 262089305    2 DYSKLCESIFNlNNDVRYVAVIDDAGLPIAGGMRGGI-----DSIMDENNEELylthtALRKSMRERFDNSMGRSRFAYV 76
Cdd:pfam20364   8 EYEARCKEMLI-DPEVRFAALLGADGELLAGGLKENInlrlnDAQMDEVCKEL-----ASRVEKRKKYDFELGRVKYSTS 81

                          90       100
                  ....*....|....*....|....*.
gi 262089305   77 EREKISILTFYMNKYILLVTMEPNIN 102
Cdd:pfam20364  82 RREHVVIMSFPVYEKVVMIVAEPNVN 107
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH