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Conserved domains on  [gi|262035412|emb|CAX33622|]
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ribosomal protein S16, partial (chloroplast) [Hypochaeris tenuifolia]

Protein Classification

30S ribosomal protein S16( domain architecture ID 1903205)

30S ribosomal protein S16 is a ribosomal protein that may have a cation-dependent endonuclease activity

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
rpsP super family cl42308
30S ribosomal protein S16; Provisional
 1-30 5.99e-15

30S ribosomal protein S16; Provisional


The actual alignment was detected with superfamily member CHL00005:

Pssm-ID: 478112  Cd Length: 82  Bit Score: 61.19  E-value: 5.99e-15
                        10        20        30
                ....*....|....*....|....*....|
gi 262035412  1 AILYFLEKGAQPTGTVQDILKKAEVFKELC 30
Cdd:CHL00005 52 AILYFLEKGAQPTETVYDILKKAEVFKELS 81
 
Name Accession Description Interval E-value
rps16 CHL00005
ribosomal protein S16
 1-30 5.99e-15

ribosomal protein S16


Pssm-ID: 176950  Cd Length: 82  Bit Score: 61.19  E-value: 5.99e-15
                        10        20        30
                ....*....|....*....|....*....|
gi 262035412  1 AILYFLEKGAQPTGTVQDILKKAEVFKELC 30
Cdd:CHL00005 52 AILYFLEKGAQPTETVYDILKKAEVFKELS 81
S16 TIGR00002
ribosomal protein S16; This model describes ribosomal S16 of bacteria and organelles. [Protein ...
 1-26 9.29e-08

ribosomal protein S16; This model describes ribosomal S16 of bacteria and organelles. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 272848  Cd Length: 78  Bit Score: 42.61  E-value: 9.29e-08
                         10        20
                 ....*....|....*....|....*.
gi 262035412   1 AILYFLEKGAQPTGTVQDILKKAEVF 26
Cdd:TIGR00002 53 RIKHWLSKGAQPTDTVRKLLKKAGVF 78
RpsP COG0228
Ribosomal protein S16 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S16 ...
 2-23 4.02e-06

Ribosomal protein S16 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S16 is part of the Pathway/BioSystem: Ribosome 30S subunit


Pssm-ID: 439998  Cd Length: 76  Bit Score: 38.49  E-value: 4.02e-06
                        10        20
                ....*....|....*....|..
gi 262035412  2 ILYFLEKGAQPTGTVQDILKKA 23
Cdd:COG0228  55 AQYWLSKGAQPTDTVAKLLKKA 76
 
Name Accession Description Interval E-value
rps16 CHL00005
ribosomal protein S16
 1-30 5.99e-15

ribosomal protein S16


Pssm-ID: 176950  Cd Length: 82  Bit Score: 61.19  E-value: 5.99e-15
                        10        20        30
                ....*....|....*....|....*....|
gi 262035412  1 AILYFLEKGAQPTGTVQDILKKAEVFKELC 30
Cdd:CHL00005 52 AILYFLEKGAQPTETVYDILKKAEVFKELS 81
S16 TIGR00002
ribosomal protein S16; This model describes ribosomal S16 of bacteria and organelles. [Protein ...
 1-26 9.29e-08

ribosomal protein S16; This model describes ribosomal S16 of bacteria and organelles. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 272848  Cd Length: 78  Bit Score: 42.61  E-value: 9.29e-08
                         10        20
                 ....*....|....*....|....*.
gi 262035412   1 AILYFLEKGAQPTGTVQDILKKAEVF 26
Cdd:TIGR00002 53 RIKHWLSKGAQPTDTVRKLLKKAGVF 78
RpsP COG0228
Ribosomal protein S16 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S16 ...
 2-23 4.02e-06

Ribosomal protein S16 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S16 is part of the Pathway/BioSystem: Ribosome 30S subunit


Pssm-ID: 439998  Cd Length: 76  Bit Score: 38.49  E-value: 4.02e-06
                        10        20
                ....*....|....*....|..
gi 262035412  2 ILYFLEKGAQPTGTVQDILKKA 23
Cdd:COG0228  55 AQYWLSKGAQPTDTVAKLLKKA 76
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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