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Conserved domains on  [gi|261181254|ref|YP_003240108|]
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VP1 protein [Epizootic hemorrhagic disease virus (serotype 1 / strain New Jersey)]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Orbi_VP1 super family cl12314
Orbivirus RNA-dependent RNA polymerase (VP1); This family consists of the RNA-dependent RNA ...
 1-1302 0e+00

Orbivirus RNA-dependent RNA polymerase (VP1); This family consists of the RNA-dependent RNA polymerase protein VP1 from the Orbiviruses. VP1 may have both enzymatic and structural roles in the virus life cycle.


The actual alignment was detected with superfamily member pfam05788:

Pssm-ID: 461740  Cd Length: 1297  Bit Score: 1531.57  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 261181254     1 MVAITVQGAELIKRVVERIYPGTSFDLSEGVIEFYKFSDHIRRIREKHGVVYKRKAEEIERNIKLRKEELFGIPVLRDST 80
Cdd:pfam05788    1 MVAITVQGAQLIKRVVERFYPGIAFAINEGACYIYKFSDHIRRIRMKHGTKYRRQAEEILRKISLRKERLYGIPVLDEVE 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 261181254    81 WEEIFnidykDDAVFQVYMNSVLRQEDLEPEEEFLRNYRVHGEHAGLTQFIEQRAKNEMQIYGDIPIKVWAAFLLELDFE 160
Cdd:pfam05788   81 WKYVF-----DGQTFQSYAFEVYVNSILPWSELDPEEEFLRNYRVSREKTEVEKFIEFRAKNEMQIYGDIPIKVWCCFIN 155

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 261181254   161 TKHQSLGVKVMSSFIKRFGEPFHQGFRDLSNLEDFNISYSTPLLFEMCCMESILEHNIIMRMKEEGIQTLEYGDEKIDPV 240
Cdd:pfam05788  156 ELSIELGMQPLGMQVMADFVNRFQSPFHQGNRDLSNLEDFQVAYTTPLLFEMCCMESILEFNIKMRMREEEISALEFGDV 235

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 261181254   241 ALLRELFIVCLPHPKKINNMLRSPYSWFVKMWGVGAEQITVLTSGAGDDRNSKDVFYDRYQTNLNRYVDIFKCKFYSDSL 320
Cdd:pfam05788  236 KLDPVGLLREFFILCLPHPKKINNVLRAPYSWFVKMWGVGADPIVVLQSTAGDDRNSKDVFYDKFRTEPNRYKALFRSSF 315

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 261181254   321 KSNSDKVQEAITYSQNLGMHHYGLPVFESLLRSVYRRPFYPFKQSNLMLASFLLSLQVITGYGRAWVKNVGTDFDKQMKP 400
Cdd:pfam05788  316 YNESRRMNEEKILEAVKYSQDLGSHDRRLPLFEKMLKPVYTTPFYPHKSSNMILASFLLSIQTITGYGRAWVKNVSTEFD 395

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 261181254   401 TPDNLIAQVSEGTRDNFIQAYNEAKEKREEIVKPEDLYTSMLRLARNTSSGFAAEILIQKRFGPNKR-KELVKINSRIKA 479
Cdd:pfam05788  396 KQLKPNPSNLVLDVSDLTREFFKQAYVEAKERREEDVKPEDLYTSMLRLARNTSSGFSTEIYVKKRFgPRLRDKDLRKIN 475

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 261181254   480 VVIFTRGHIVFTPTELEKKYNTAELYQTKGSRDVPIKATRTIYSINLSVLVPQLIVTLPLNEYFARVGGNTSPEYKKLGG 559
Cdd:pfam05788  476 SRIKALVIFTKGHTVFTDEELHKKYNSVELYQTKGSRDVPIKATRTIYSINLSVLVPQLIVTLPLNEYFSRVGGITKPDY 555

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 261181254   560 KIIVGDLEATGSRVVDAADCFRNSGDKDILVIAIDYSEYDTHLTRYNFRKGMLEGIRESMKPYKDLRYEGYDLDQIIEFG 639
Cdd:pfam05788  556 KKIGGKVIVGDLEATGSRVMDAADCFRNSADRDIFTIAIDYSEYDTHLTRHNFRTGMLQGIREAMAPYRGLRYEGYTLEQ 635

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 261181254   640 YGEGRVSRTLWNGKRRVFKTTLDKYLSLSEAERAQGEFKVPKGVLPVSTINVAEKIEVERNFNTLISATDGSDLALIDTH 719
Cdd:pfam05788  636 IIDFGYGEGRVANTLWNGKRRLFKTTFDAYIRLDESERDKGSFKVPKGVLPVSSVDVANRIAVDKGFDTLIAATDGSDLA 715

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 261181254   720 LSGENSTLIANSMHNKAIGGLIQSELKKEHMHDITFLSEQYVGDDTLFYCKLHTTDRTKIQQMITKIFETVTKCGHEAAP 799
Cdd:pfam05788  716 LIDTHLSGENSTLIANSMHNMAIGTLGQRQVGREQPGSLTFLSEQYVGDDTLFYTKLHTTDKVVFDKVAASIFDTVAKCG 795

                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 261181254   800 SKTMITPYSVEKTQTHAKQGIYVPQDRMMIISSERRKDIEDVQGYVRSQVQTMVTKVSRGFCHDLAQLILMLKTTFIGAW 879
Cdd:pfam05788  796 HEASPSKTMMTPYSVEKTQTHAKQGCYVPQDRMMIISSERRKDIEDVQGYVRSQVQTMITKVSRGFCHDLAQLILMLKTT 875

                          890       900       910       920       930       940       950       960
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 261181254   880 KMKRTIKEEGIYRDRKFDSNEEDGYTLVMLRNPLALYVPIGWNGYGAHPVAINIVMTEEMFLDSMCIGNLDEVMRPILKI 959
Cdd:pfam05788  876 FIGAWKMKRTIKEDAMYRDRKFDSNDEDGFTLIQIRNPLALYVPIGWNGYGAHPAALNIVMTEEMYVDSIMISKLDEIMA 955

                          970       980       990      1000      1010      1020      1030      1040
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 261181254   960 RGKIPPTWNETEADKRAIGSETKMSFFSKMARPAVQIALNNREIMEAVEHLPLGDFSPGKLSRTMMHSALLKESKARSLL 1039
Cdd:pfam05788  956 PIRRIVHDIPPCWNETQGDKRGLISATKKSFFSKMARPAVQAALSDPQIENLVEELPLGEFSPGRISRTMMHSALLKESS 1035

                         1050      1060      1070      1080      1090      1100      1110      1120
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 261181254  1040 AAGYELDYQKSLNAWSEErVMVAMREEPGVISTSYGKLFDLYFEDEVMEAPYMFPDQNLSPQFYIQKMKIGPRCSSRIRT 1119
Cdd:pfam05788 1036 ASGLLSSGYKLEYQKALN-VWIRQVSMRLGEESGVISTSYAKLFDVYFEGELDGAPQMFPDQNLSPQFYIQKMMIGPRVS 1114

                         1130      1140      1150      1160      1170      1180      1190      1200
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 261181254  1120 SYIDRIDVILRKDVVMRGFITANTILNVIEKLGTNHTASDLTTVFTLMNIESKVAEELSEYITSEKIRFDALKLLKKGIA 1199
Cdd:pfam05788 1115 SRVRNSYVDRIDVILRKDVVMRGFITANTILNVIEKLGTNHSVGDLVTVFTLMNIETRVAEELAEYMTSEKIRFDALKLL 1194

                         1210      1220      1230      1240      1250      1260      1270      1280
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 261181254  1200 GDEFTMSIDVATQAMVDKFIKYPHQLTKTELDAIVLYCSQIIMLRAACGLPLKKMRLVVLDEAKRRFKVRAQRFRTHIPR 1279
Cdd:pfam05788 1195 KKGIAGDEFTMSLNVATQDFIDTYLAYPYQLTKTEVDAISLYCTQMAMLRAALGLPKKKMKIVVTDDAKKRYKIRLQRFR 1274

                         1290      1300
                   ....*....|....*....|...
gi 261181254  1280 IKVIKKLMDLNRMSVRRLENQFV 1302
Cdd:pfam05788 1275 THVPKIKVLKKLIDPNRMTVRNL 1297
 
Name Accession Description Interval E-value
Orbi_VP1 pfam05788
Orbivirus RNA-dependent RNA polymerase (VP1); This family consists of the RNA-dependent RNA ...
 1-1302 0e+00

Orbivirus RNA-dependent RNA polymerase (VP1); This family consists of the RNA-dependent RNA polymerase protein VP1 from the Orbiviruses. VP1 may have both enzymatic and structural roles in the virus life cycle.


Pssm-ID: 461740  Cd Length: 1297  Bit Score: 1531.57  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 261181254     1 MVAITVQGAELIKRVVERIYPGTSFDLSEGVIEFYKFSDHIRRIREKHGVVYKRKAEEIERNIKLRKEELFGIPVLRDST 80
Cdd:pfam05788    1 MVAITVQGAQLIKRVVERFYPGIAFAINEGACYIYKFSDHIRRIRMKHGTKYRRQAEEILRKISLRKERLYGIPVLDEVE 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 261181254    81 WEEIFnidykDDAVFQVYMNSVLRQEDLEPEEEFLRNYRVHGEHAGLTQFIEQRAKNEMQIYGDIPIKVWAAFLLELDFE 160
Cdd:pfam05788   81 WKYVF-----DGQTFQSYAFEVYVNSILPWSELDPEEEFLRNYRVSREKTEVEKFIEFRAKNEMQIYGDIPIKVWCCFIN 155

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 261181254   161 TKHQSLGVKVMSSFIKRFGEPFHQGFRDLSNLEDFNISYSTPLLFEMCCMESILEHNIIMRMKEEGIQTLEYGDEKIDPV 240
Cdd:pfam05788  156 ELSIELGMQPLGMQVMADFVNRFQSPFHQGNRDLSNLEDFQVAYTTPLLFEMCCMESILEFNIKMRMREEEISALEFGDV 235

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 261181254   241 ALLRELFIVCLPHPKKINNMLRSPYSWFVKMWGVGAEQITVLTSGAGDDRNSKDVFYDRYQTNLNRYVDIFKCKFYSDSL 320
Cdd:pfam05788  236 KLDPVGLLREFFILCLPHPKKINNVLRAPYSWFVKMWGVGADPIVVLQSTAGDDRNSKDVFYDKFRTEPNRYKALFRSSF 315

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 261181254   321 KSNSDKVQEAITYSQNLGMHHYGLPVFESLLRSVYRRPFYPFKQSNLMLASFLLSLQVITGYGRAWVKNVGTDFDKQMKP 400
Cdd:pfam05788  316 YNESRRMNEEKILEAVKYSQDLGSHDRRLPLFEKMLKPVYTTPFYPHKSSNMILASFLLSIQTITGYGRAWVKNVSTEFD 395

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 261181254   401 TPDNLIAQVSEGTRDNFIQAYNEAKEKREEIVKPEDLYTSMLRLARNTSSGFAAEILIQKRFGPNKR-KELVKINSRIKA 479
Cdd:pfam05788  396 KQLKPNPSNLVLDVSDLTREFFKQAYVEAKERREEDVKPEDLYTSMLRLARNTSSGFSTEIYVKKRFgPRLRDKDLRKIN 475

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 261181254   480 VVIFTRGHIVFTPTELEKKYNTAELYQTKGSRDVPIKATRTIYSINLSVLVPQLIVTLPLNEYFARVGGNTSPEYKKLGG 559
Cdd:pfam05788  476 SRIKALVIFTKGHTVFTDEELHKKYNSVELYQTKGSRDVPIKATRTIYSINLSVLVPQLIVTLPLNEYFSRVGGITKPDY 555

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 261181254   560 KIIVGDLEATGSRVVDAADCFRNSGDKDILVIAIDYSEYDTHLTRYNFRKGMLEGIRESMKPYKDLRYEGYDLDQIIEFG 639
Cdd:pfam05788  556 KKIGGKVIVGDLEATGSRVMDAADCFRNSADRDIFTIAIDYSEYDTHLTRHNFRTGMLQGIREAMAPYRGLRYEGYTLEQ 635

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 261181254   640 YGEGRVSRTLWNGKRRVFKTTLDKYLSLSEAERAQGEFKVPKGVLPVSTINVAEKIEVERNFNTLISATDGSDLALIDTH 719
Cdd:pfam05788  636 IIDFGYGEGRVANTLWNGKRRLFKTTFDAYIRLDESERDKGSFKVPKGVLPVSSVDVANRIAVDKGFDTLIAATDGSDLA 715

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 261181254   720 LSGENSTLIANSMHNKAIGGLIQSELKKEHMHDITFLSEQYVGDDTLFYCKLHTTDRTKIQQMITKIFETVTKCGHEAAP 799
Cdd:pfam05788  716 LIDTHLSGENSTLIANSMHNMAIGTLGQRQVGREQPGSLTFLSEQYVGDDTLFYTKLHTTDKVVFDKVAASIFDTVAKCG 795

                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 261181254   800 SKTMITPYSVEKTQTHAKQGIYVPQDRMMIISSERRKDIEDVQGYVRSQVQTMVTKVSRGFCHDLAQLILMLKTTFIGAW 879
Cdd:pfam05788  796 HEASPSKTMMTPYSVEKTQTHAKQGCYVPQDRMMIISSERRKDIEDVQGYVRSQVQTMITKVSRGFCHDLAQLILMLKTT 875

                          890       900       910       920       930       940       950       960
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 261181254   880 KMKRTIKEEGIYRDRKFDSNEEDGYTLVMLRNPLALYVPIGWNGYGAHPVAINIVMTEEMFLDSMCIGNLDEVMRPILKI 959
Cdd:pfam05788  876 FIGAWKMKRTIKEDAMYRDRKFDSNDEDGFTLIQIRNPLALYVPIGWNGYGAHPAALNIVMTEEMYVDSIMISKLDEIMA 955

                          970       980       990      1000      1010      1020      1030      1040
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 261181254   960 RGKIPPTWNETEADKRAIGSETKMSFFSKMARPAVQIALNNREIMEAVEHLPLGDFSPGKLSRTMMHSALLKESKARSLL 1039
Cdd:pfam05788  956 PIRRIVHDIPPCWNETQGDKRGLISATKKSFFSKMARPAVQAALSDPQIENLVEELPLGEFSPGRISRTMMHSALLKESS 1035

                         1050      1060      1070      1080      1090      1100      1110      1120
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 261181254  1040 AAGYELDYQKSLNAWSEErVMVAMREEPGVISTSYGKLFDLYFEDEVMEAPYMFPDQNLSPQFYIQKMKIGPRCSSRIRT 1119
Cdd:pfam05788 1036 ASGLLSSGYKLEYQKALN-VWIRQVSMRLGEESGVISTSYAKLFDVYFEGELDGAPQMFPDQNLSPQFYIQKMMIGPRVS 1114

                         1130      1140      1150      1160      1170      1180      1190      1200
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 261181254  1120 SYIDRIDVILRKDVVMRGFITANTILNVIEKLGTNHTASDLTTVFTLMNIESKVAEELSEYITSEKIRFDALKLLKKGIA 1199
Cdd:pfam05788 1115 SRVRNSYVDRIDVILRKDVVMRGFITANTILNVIEKLGTNHSVGDLVTVFTLMNIETRVAEELAEYMTSEKIRFDALKLL 1194

                         1210      1220      1230      1240      1250      1260      1270      1280
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 261181254  1200 GDEFTMSIDVATQAMVDKFIKYPHQLTKTELDAIVLYCSQIIMLRAACGLPLKKMRLVVLDEAKRRFKVRAQRFRTHIPR 1279
Cdd:pfam05788 1195 KKGIAGDEFTMSLNVATQDFIDTYLAYPYQLTKTEVDAISLYCTQMAMLRAALGLPKKKMKIVVTDDAKKRYKIRLQRFR 1274

                         1290      1300
                   ....*....|....*....|...
gi 261181254  1280 IKVIKKLMDLNRMSVRRLENQFV 1302
Cdd:pfam05788 1275 THVPKIKVLKKLIDPNRMTVRNL 1297
 
Name Accession Description Interval E-value
Orbi_VP1 pfam05788
Orbivirus RNA-dependent RNA polymerase (VP1); This family consists of the RNA-dependent RNA ...
 1-1302 0e+00

Orbivirus RNA-dependent RNA polymerase (VP1); This family consists of the RNA-dependent RNA polymerase protein VP1 from the Orbiviruses. VP1 may have both enzymatic and structural roles in the virus life cycle.


Pssm-ID: 461740  Cd Length: 1297  Bit Score: 1531.57  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 261181254     1 MVAITVQGAELIKRVVERIYPGTSFDLSEGVIEFYKFSDHIRRIREKHGVVYKRKAEEIERNIKLRKEELFGIPVLRDST 80
Cdd:pfam05788    1 MVAITVQGAQLIKRVVERFYPGIAFAINEGACYIYKFSDHIRRIRMKHGTKYRRQAEEILRKISLRKERLYGIPVLDEVE 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 261181254    81 WEEIFnidykDDAVFQVYMNSVLRQEDLEPEEEFLRNYRVHGEHAGLTQFIEQRAKNEMQIYGDIPIKVWAAFLLELDFE 160
Cdd:pfam05788   81 WKYVF-----DGQTFQSYAFEVYVNSILPWSELDPEEEFLRNYRVSREKTEVEKFIEFRAKNEMQIYGDIPIKVWCCFIN 155

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 261181254   161 TKHQSLGVKVMSSFIKRFGEPFHQGFRDLSNLEDFNISYSTPLLFEMCCMESILEHNIIMRMKEEGIQTLEYGDEKIDPV 240
Cdd:pfam05788  156 ELSIELGMQPLGMQVMADFVNRFQSPFHQGNRDLSNLEDFQVAYTTPLLFEMCCMESILEFNIKMRMREEEISALEFGDV 235

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 261181254   241 ALLRELFIVCLPHPKKINNMLRSPYSWFVKMWGVGAEQITVLTSGAGDDRNSKDVFYDRYQTNLNRYVDIFKCKFYSDSL 320
Cdd:pfam05788  236 KLDPVGLLREFFILCLPHPKKINNVLRAPYSWFVKMWGVGADPIVVLQSTAGDDRNSKDVFYDKFRTEPNRYKALFRSSF 315

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 261181254   321 KSNSDKVQEAITYSQNLGMHHYGLPVFESLLRSVYRRPFYPFKQSNLMLASFLLSLQVITGYGRAWVKNVGTDFDKQMKP 400
Cdd:pfam05788  316 YNESRRMNEEKILEAVKYSQDLGSHDRRLPLFEKMLKPVYTTPFYPHKSSNMILASFLLSIQTITGYGRAWVKNVSTEFD 395

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 261181254   401 TPDNLIAQVSEGTRDNFIQAYNEAKEKREEIVKPEDLYTSMLRLARNTSSGFAAEILIQKRFGPNKR-KELVKINSRIKA 479
Cdd:pfam05788  396 KQLKPNPSNLVLDVSDLTREFFKQAYVEAKERREEDVKPEDLYTSMLRLARNTSSGFSTEIYVKKRFgPRLRDKDLRKIN 475

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 261181254   480 VVIFTRGHIVFTPTELEKKYNTAELYQTKGSRDVPIKATRTIYSINLSVLVPQLIVTLPLNEYFARVGGNTSPEYKKLGG 559
Cdd:pfam05788  476 SRIKALVIFTKGHTVFTDEELHKKYNSVELYQTKGSRDVPIKATRTIYSINLSVLVPQLIVTLPLNEYFSRVGGITKPDY 555

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 261181254   560 KIIVGDLEATGSRVVDAADCFRNSGDKDILVIAIDYSEYDTHLTRYNFRKGMLEGIRESMKPYKDLRYEGYDLDQIIEFG 639
Cdd:pfam05788  556 KKIGGKVIVGDLEATGSRVMDAADCFRNSADRDIFTIAIDYSEYDTHLTRHNFRTGMLQGIREAMAPYRGLRYEGYTLEQ 635

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 261181254   640 YGEGRVSRTLWNGKRRVFKTTLDKYLSLSEAERAQGEFKVPKGVLPVSTINVAEKIEVERNFNTLISATDGSDLALIDTH 719
Cdd:pfam05788  636 IIDFGYGEGRVANTLWNGKRRLFKTTFDAYIRLDESERDKGSFKVPKGVLPVSSVDVANRIAVDKGFDTLIAATDGSDLA 715

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 261181254   720 LSGENSTLIANSMHNKAIGGLIQSELKKEHMHDITFLSEQYVGDDTLFYCKLHTTDRTKIQQMITKIFETVTKCGHEAAP 799
Cdd:pfam05788  716 LIDTHLSGENSTLIANSMHNMAIGTLGQRQVGREQPGSLTFLSEQYVGDDTLFYTKLHTTDKVVFDKVAASIFDTVAKCG 795

                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 261181254   800 SKTMITPYSVEKTQTHAKQGIYVPQDRMMIISSERRKDIEDVQGYVRSQVQTMVTKVSRGFCHDLAQLILMLKTTFIGAW 879
Cdd:pfam05788  796 HEASPSKTMMTPYSVEKTQTHAKQGCYVPQDRMMIISSERRKDIEDVQGYVRSQVQTMITKVSRGFCHDLAQLILMLKTT 875

                          890       900       910       920       930       940       950       960
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 261181254   880 KMKRTIKEEGIYRDRKFDSNEEDGYTLVMLRNPLALYVPIGWNGYGAHPVAINIVMTEEMFLDSMCIGNLDEVMRPILKI 959
Cdd:pfam05788  876 FIGAWKMKRTIKEDAMYRDRKFDSNDEDGFTLIQIRNPLALYVPIGWNGYGAHPAALNIVMTEEMYVDSIMISKLDEIMA 955

                          970       980       990      1000      1010      1020      1030      1040
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 261181254   960 RGKIPPTWNETEADKRAIGSETKMSFFSKMARPAVQIALNNREIMEAVEHLPLGDFSPGKLSRTMMHSALLKESKARSLL 1039
Cdd:pfam05788  956 PIRRIVHDIPPCWNETQGDKRGLISATKKSFFSKMARPAVQAALSDPQIENLVEELPLGEFSPGRISRTMMHSALLKESS 1035

                         1050      1060      1070      1080      1090      1100      1110      1120
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 261181254  1040 AAGYELDYQKSLNAWSEErVMVAMREEPGVISTSYGKLFDLYFEDEVMEAPYMFPDQNLSPQFYIQKMKIGPRCSSRIRT 1119
Cdd:pfam05788 1036 ASGLLSSGYKLEYQKALN-VWIRQVSMRLGEESGVISTSYAKLFDVYFEGELDGAPQMFPDQNLSPQFYIQKMMIGPRVS 1114

                         1130      1140      1150      1160      1170      1180      1190      1200
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 261181254  1120 SYIDRIDVILRKDVVMRGFITANTILNVIEKLGTNHTASDLTTVFTLMNIESKVAEELSEYITSEKIRFDALKLLKKGIA 1199
Cdd:pfam05788 1115 SRVRNSYVDRIDVILRKDVVMRGFITANTILNVIEKLGTNHSVGDLVTVFTLMNIETRVAEELAEYMTSEKIRFDALKLL 1194

                         1210      1220      1230      1240      1250      1260      1270      1280
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 261181254  1200 GDEFTMSIDVATQAMVDKFIKYPHQLTKTELDAIVLYCSQIIMLRAACGLPLKKMRLVVLDEAKRRFKVRAQRFRTHIPR 1279
Cdd:pfam05788 1195 KKGIAGDEFTMSLNVATQDFIDTYLAYPYQLTKTEVDAISLYCTQMAMLRAALGLPKKKMKIVVTDDAKKRYKIRLQRFR 1274

                         1290      1300
                   ....*....|....*....|...
gi 261181254  1280 IKVIKKLMDLNRMSVRRLENQFV 1302
Cdd:pfam05788 1275 THVPKIKVLKKLIDPNRMTVRNL 1297
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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