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Conserved domains on  [gi|260150986|ref|YP_003208301|]
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NADH dehydrogenase subunit 1 (mitochondrion) [Mesocricetus auratus]

Protein Classification

NADH dehydrogenase subunit 1( domain architecture ID 10009566)

NADH dehydrogenase subunit 1 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND1 MTH00104
NADH dehydrogenase subunit 1; Provisional
 16-318 0e+00

NADH dehydrogenase subunit 1; Provisional


:

Pssm-ID: 177166  Cd Length: 318  Bit Score: 568.87  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 260150986  16 AMAFLTLVERKILGYMQLRKGPNIVGPYGILQPFADAMKLFIKEPLRPLATSTSLFIIAPTLSLMLAFSLWIPLPMPHPL 95
Cdd:MTH00104  16 AVAFLTLVERKVLGYMQLRKGPNIVGPYGLLQPFADAMKLFTKEPLRPLTSSTTMFIIAPILALTLALTMWIPLPMPYPL 95

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 260150986  96 INMNMGMLFILAISSLSVYSILWSGWASNSKYSMFGALRAIAQTISYEVTMAIILLSVLLMNGSFSLQFLITTQEHTWLL 175
Cdd:MTH00104  96 INMNLGVLFILAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVLLMNGSFTLSTLITTQEHLWLI 175

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 260150986 176 LMSWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYTNIILMNALSTIVFLGPIHSLYLPHVY 255
Cdd:MTH00104 176 FPSWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYANIIMMNALTTILFLGAFHNPYMPELY 255

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 260150986 256 TTDFMIKTLMLTSLFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCTWHISIPIFMASIPPYT 318
Cdd:MTH00104 256 TTNFTIKTLLLTILFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCMWHISLPIMTASIPPQT 318
 
Name Accession Description Interval E-value
ND1 MTH00104
NADH dehydrogenase subunit 1; Provisional
 16-318 0e+00

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177166  Cd Length: 318  Bit Score: 568.87  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 260150986  16 AMAFLTLVERKILGYMQLRKGPNIVGPYGILQPFADAMKLFIKEPLRPLATSTSLFIIAPTLSLMLAFSLWIPLPMPHPL 95
Cdd:MTH00104  16 AVAFLTLVERKVLGYMQLRKGPNIVGPYGLLQPFADAMKLFTKEPLRPLTSSTTMFIIAPILALTLALTMWIPLPMPYPL 95

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 260150986  96 INMNMGMLFILAISSLSVYSILWSGWASNSKYSMFGALRAIAQTISYEVTMAIILLSVLLMNGSFSLQFLITTQEHTWLL 175
Cdd:MTH00104  96 INMNLGVLFILAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVLLMNGSFTLSTLITTQEHLWLI 175

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 260150986 176 LMSWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYTNIILMNALSTIVFLGPIHSLYLPHVY 255
Cdd:MTH00104 176 FPSWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYANIIMMNALTTILFLGAFHNPYMPELY 255

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 260150986 256 TTDFMIKTLMLTSLFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCTWHISIPIFMASIPPYT 318
Cdd:MTH00104 256 TTNFTIKTLLLTILFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCMWHISLPIMTASIPPQT 318
NADHdh pfam00146
NADH dehydrogenase;
16-299 5.35e-117

NADH dehydrogenase;


Pssm-ID: 459690  Cd Length: 302  Bit Score: 339.45  E-value: 5.35e-117
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 260150986   16 AMAFLTLVERKILGYMQLRKGPNIVGPYGILQPFADAMKLFIKEPLRPLATSTSLFIIAPTLSLMLAFSLWIPLPMPHPL 95
Cdd:pfam00146  12 AVAFLTWAERKVLARMQRRIGPNRVGPFGLLQPFADALKLLFKEDIIPAGADKFLFLLAPIIAFIPALLAFAVIPFGPGL 91

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 260150986   96 I--NMNMGMLFILAISSLSVYSILWSGWASNSKYSMFGALRAIAQTISYEVTMAIILLSVLLMNGSFSLQFLITTQEHTW 173
Cdd:pfam00146  92 VlaDLNVGILYILALSSLGVYGILLAGWASNNKYALLGALRAAAQMISYEVPLGLSLLAVVLLAGSLSLSEIVEAQAGGW 171

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 260150986  174 LLLMSWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYTNIILMNALSTIVFLGPIHSlYLPH 253
Cdd:pfam00146 172 FIPLQPLAFIVFFIAALAETNRAPFDLPEAESELVAGFHTEYSGMRFALFFLAEYANMFLMSALAVTLFLGGWLG-PFPL 250

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*.
gi 260150986  254 VYTTDFMIKTLMLTSLFLWIRASYPRFRYDQLMHLLWKNFLPLTLA 299
Cdd:pfam00146 251 PGLLWFLLKVFFVFFLFIWIRATLPRFRYDQLMRLGWKVLLPLSLA 296
NuoH COG1005
NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH: ...
 16-299 1.53e-106

NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 1 (chain H) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440629  Cd Length: 329  Bit Score: 313.61  E-value: 1.53e-106
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 260150986  16 AMAFLTLVERKILGYMQLRKGPNIVGPYGILQPFADAMKLFIKEPLRPLATSTSLFIIAPTLSLMLAFSLWIPLPM--PH 93
Cdd:COG1005   25 LAAYLTWAERKVLARMQDRIGPNRVGPFGLLQPLADGLKLLFKEDIIPAGADKFLFLLAPILAFIPALLAFAVIPFgpGL 104

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 260150986  94 PLINMNMGMLFILAISSLSVYSILWSGWASNSKYSMFGALRAIAQTISYEVTMAIILLSVLLMNGSFSLQFLITTQEHT- 172
Cdd:COG1005  105 VLADLNVGLLYVLAVSSLGVYGIILAGWASNNKYSLLGALRAAAQMISYEIPLGLSLLGVVLLAGSLNLSEIVEAQAGGl 184

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 260150986 173 WLLLMSWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYTNIILMNALSTIVFLGPIHSLYLP 252
Cdd:COG1005  185 WFILPQPLAFVVFFIAALAETNRAPFDLPEAESELVAGYHTEYSGMKFALFFLAEYANMFLVSALATTLFLGGWLGPFPI 264

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|..
gi 260150986 253 HVYTTD-----FMIKTLMLTSLFLWIRASYPRFRYDQLMHLLWKNFLPLTLA 299
Cdd:COG1005  265 LPLGGLpgilwFLLKTLFFIFFFIWVRATLPRYRYDQLMRLGWKVLLPLSLV 316
 
Name Accession Description Interval E-value
ND1 MTH00104
NADH dehydrogenase subunit 1; Provisional
 16-318 0e+00

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177166  Cd Length: 318  Bit Score: 568.87  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 260150986  16 AMAFLTLVERKILGYMQLRKGPNIVGPYGILQPFADAMKLFIKEPLRPLATSTSLFIIAPTLSLMLAFSLWIPLPMPHPL 95
Cdd:MTH00104  16 AVAFLTLVERKVLGYMQLRKGPNIVGPYGLLQPFADAMKLFTKEPLRPLTSSTTMFIIAPILALTLALTMWIPLPMPYPL 95

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 260150986  96 INMNMGMLFILAISSLSVYSILWSGWASNSKYSMFGALRAIAQTISYEVTMAIILLSVLLMNGSFSLQFLITTQEHTWLL 175
Cdd:MTH00104  96 INMNLGVLFILAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVLLMNGSFTLSTLITTQEHLWLI 175

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 260150986 176 LMSWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYTNIILMNALSTIVFLGPIHSLYLPHVY 255
Cdd:MTH00104 176 FPSWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYANIIMMNALTTILFLGAFHNPYMPELY 255

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 260150986 256 TTDFMIKTLMLTSLFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCTWHISIPIFMASIPPYT 318
Cdd:MTH00104 256 TTNFTIKTLLLTILFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCMWHISLPIMTASIPPQT 318
ND1 MTH00111
NADH dehydrogenase subunit 1; Provisional
 16-318 0e+00

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214422  Cd Length: 323  Bit Score: 522.15  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 260150986  16 AMAFLTLVERKILGYMQLRKGPNIVGPYGILQPFADAMKLFIKEPLRPLATSTSLFIIAPTLSLMLAFSLWIPLPMPHPL 95
Cdd:MTH00111  21 AVAFLTLLERKILGYMQLRKGPNIVGPFGLLQPIADGVKLFIKEPIRPSTSSPILFTLTPILALLLALTIWTPLPMPFPL 100

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 260150986  96 INMNMGMLFILAISSLSVYSILWSGWASNSKYSMFGALRAIAQTISYEVTMAIILLSVLLMNGSFSLQFLITTQEHTWLL 175
Cdd:MTH00111 101 ADLNLGLLFLLAMSSMAVYSILWSGWASNSKYALMGALRAVAQTISYEVTLGIILLSLILLSGGYTLQTLATTQEPLWLI 180

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 260150986 176 LMSWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYTNIILMNALSTIVFLGPIHSLYLPHVY 255
Cdd:MTH00111 181 FSSWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANILLMNTLTTILFLNPSTLNLPPELF 260

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 260150986 256 TTDFMIKTLMLTSLFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCTWHISIPIFMASIPPYT 318
Cdd:MTH00111 261 TINLMTKTLLLTSGFLWIRASYPRFRYDQLMHLLWKQFLPLTLALCLWHTSMPISLAGLPPQL 323
ND1 MTH00134
NADH dehydrogenase subunit 1; Provisional
 16-316 8.06e-176

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177192  Cd Length: 324  Bit Score: 489.12  E-value: 8.06e-176
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 260150986  16 AMAFLTLVERKILGYMQLRKGPNIVGPYGILQPFADAMKLFIKEPLRPLATSTSLFIIAPTLSLMLAFSLWIPLPMPHPL 95
Cdd:MTH00134  22 AVAFLTLLERKVLGYMQLRKGPNIVGPYGLLQPIADGVKLFIKEPVRPSTSSPFLFLATPMLALTLALTLWAPMPMPYPV 101

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 260150986  96 INMNMGMLFILAISSLSVYSILWSGWASNSKYSMFGALRAIAQTISYEVTMAIILLSVLLMNGSFSLQFLITTQEHTWLL 175
Cdd:MTH00134 102 TDLNLGILFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVSLGLILLSVIIFTGGFTLQTFNTAQESIWLL 181

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 260150986 176 LMSWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYTNIILMNALSTIVFLGPIHSLYLPHVY 255
Cdd:MTH00134 182 LPAWPLAAMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILLMNTLSAILFLGASHIPTLPELT 261

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 260150986 256 TTDFMIKTLMLTSLFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCTWHISIPIFMASIPP 316
Cdd:MTH00134 262 TINLMTKAALLSVVFLWVRASYPRFRYDQLMHLVWKNFLPLTLALVIWHLALPIAFAGLPP 322
ND1 MTH00071
NADH dehydrogenase subunit 1; Provisional
 16-316 3.05e-175

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214418  Cd Length: 322  Bit Score: 487.59  E-value: 3.05e-175
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 260150986  16 AMAFLTLVERKILGYMQLRKGPNIVGPYGILQPFADAMKLFIKEPLRPLATSTSLFIIAPTLSLMLAFSLWIPLPMPHPL 95
Cdd:MTH00071  21 AVAFLTLVERKVLGYMQLRKGPNIVGPMGLLQPIADGLKLFIKEPIRPSTSSQILFILMPTMALTLALIIWTPLPMPNNL 100

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 260150986  96 INMNMGMLFILAISSLSVYSILWSGWASNSKYSMFGALRAIAQTISYEVTMAIILLSVLLMNGSFSLQFLITTQEHTWLL 175
Cdd:MTH00071 101 SNLNLGILFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVTLGLILLCLILLTGGFSLMNFNTTQEFMWLI 180

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 260150986 176 LMSWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYTNIILMNALSTIVFLGPIHSLYLPHVY 255
Cdd:MTH00071 181 IPAWPMAAMWFISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILMMNTLSTILFLGSTYNHLQPELS 260

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 260150986 256 TTDFMIKTLMLTSLFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCTWHISIPIFMASIPP 316
Cdd:MTH00071 261 TMNLMIKASILSMLFLWVRASYPRFRYDQLMHLVWKNFLPITLAMTIFHISLPISTLGIPP 321
ND1 MTH00218
NADH dehydrogenase subunit 1; Provisional
 16-316 6.20e-146

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214463  Cd Length: 311  Bit Score: 413.15  E-value: 6.20e-146
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 260150986  16 AMAFLTLVERKILGYMQLRKGPNIVGPYGILQPFADAMKLFIKEPLRPLATSTSLFIIAPTLSLMLAFSLWIPLPMPHPL 95
Cdd:MTH00218  18 AVAFLTLLERKVLGYMQLRKGPNVVGPYGLLQPIADGVKLFIKEPIRPSTSSPFLFLLAPILALTLALLLWMPLPLPFSL 97

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 260150986  96 INMNMGMLFILAISSLSVYSILWSGWASNSKYSMFGALRAIAQTISYEVTMAIILLSVLLMNGSFSLQFLITTQEHTWLL 175
Cdd:MTH00218  98 INLNLGVLFILAISSLGVYSILWSGWASNSKYALMGALRAVAQTISYEVSLGLIILSLIILTGGFSLEGFNLTQETIWLL 177

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 260150986 176 LMSWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYTNIILMNALSTIVFLGPIHSLYlphvy 255
Cdd:MTH00218 178 IPEWPLALMWFISTLAETNRAPFDLTEGESELVSGFNVEYSGGPFALFFLAEYMNILFMNTLSVILFLGTSLTTI----- 252

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 260150986 256 ttDFMIKTLMLTSLFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCTWHISIPIFMASIPP 316
Cdd:MTH00218 253 --NLMLKATLLVFLFLWVRASLPRFRYDQLMHLAWKNFLPLSLALLLLHTSLPLSFASLPP 311
ND1 MTH00040
NADH dehydrogenase subunit 1; Validated
 16-318 8.83e-142

NADH dehydrogenase subunit 1; Validated


Pssm-ID: 214409  Cd Length: 323  Bit Score: 403.20  E-value: 8.83e-142
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 260150986  16 AMAFLTLVERKILGYMQLRKGPNIVGPYGILQPFADAMKLFIKEPLRPLATSTSLFIIAPTLSLMLAFSLWIPLPMPHPL 95
Cdd:MTH00040  20 AVAFLTLVERKVLGYMQFRKGPNVVGPYGLLQPFADGLKLFIKETLKPSNASPYLFFFSPVLFLFLALLLWSLIPVPTPT 99

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 260150986  96 INMNMGMLFILAISSLSVYSILWSGWASNSKYSMFGALRAIAQTISYEVTMAIILLSVLLMNGSFSLQFLITTQEHTWLL 175
Cdd:MTH00040 100 LNVNLSLLLVLGLSSLSVYALLGSGWASNSKYSLLGAIRAVAQTISYEISLGLILLSLVIFSGSFSLSSISNSQNGSWLL 179

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 260150986 176 LMSWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYTNIILMNALSTIVFLG---PIHSLYLP 252
Cdd:MTH00040 180 FPCLPLFYIWFISTLAETNRAPFDLTEGESELVSGYNVEYAGGPFALFFIAEYANIIFMNLLSVILFLGggsPFNEIFPI 259

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 260150986 253 HVYTTdfMIKTLMLTSLFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCTWHISIPIFMASIPPYT 318
Cdd:MTH00040 260 NIIIV--GIKTTFLVFLFLWVRASYPRFRYDQLMFLTWKNYLPLSIGLLIFYLLLLSLLNILPPNY 323
ND1 MTH00143
NADH dehydrogenase subunit 1; Provisional
 16-300 7.47e-120

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177201  Cd Length: 307  Bit Score: 346.86  E-value: 7.47e-120
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 260150986  16 AMAFLTLVERKILGYMQLRKGPNIVGPYGILQPFADAMKLFIKEPLRPLATSTSLFIIAPTLSLMLAFSLWIPLPMPHPL 95
Cdd:MTH00143  17 AVAFFTLLERKGLGYFQIRKGPNKVGLMGLPQPLADAVKLFTKEFVKPTMSNKFPFFLAPCLSLILALLLWQLYPSYFSS 96

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 260150986  96 INMNMGMLFILAISSLSVYSILWSGWASNSKYSMFGALRAIAQTISYEVTMAIILLSVLLMNGSFSLQFLITTQEHTWLL 175
Cdd:MTH00143  97 SYFGWGLLFFLCVSSLNVYGVLLAGWSSNSKYALLGAVRAVAQTISYEVSMSLILLFPLFLSGSFSFIEISESQFSVWLG 176

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 260150986 176 LMSWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYTNIILMNALSTIVFLGpiHSLYLPHVY 255
Cdd:MTH00143 177 FLMFPVFLMWFVSCLAETNRAPFDFAEGESELVSGFNVEYGGGGFALLFLAEYANILFMSLLTVVLFFG--GSSVLFLLG 254

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*
gi 260150986 256 TTDFMIKTLMLTSLFLWIRASYPRFRYDQLMHLLWKNFLPLTLAL 300
Cdd:MTH00143 255 GVVFMFKVLFFAFLFIWVRASYPRFRYDLLMMLCWKSFLPFSLSI 299
NADHdh pfam00146
NADH dehydrogenase;
16-299 5.35e-117

NADH dehydrogenase;


Pssm-ID: 459690  Cd Length: 302  Bit Score: 339.45  E-value: 5.35e-117
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 260150986   16 AMAFLTLVERKILGYMQLRKGPNIVGPYGILQPFADAMKLFIKEPLRPLATSTSLFIIAPTLSLMLAFSLWIPLPMPHPL 95
Cdd:pfam00146  12 AVAFLTWAERKVLARMQRRIGPNRVGPFGLLQPFADALKLLFKEDIIPAGADKFLFLLAPIIAFIPALLAFAVIPFGPGL 91

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 260150986   96 I--NMNMGMLFILAISSLSVYSILWSGWASNSKYSMFGALRAIAQTISYEVTMAIILLSVLLMNGSFSLQFLITTQEHTW 173
Cdd:pfam00146  92 VlaDLNVGILYILALSSLGVYGILLAGWASNNKYALLGALRAAAQMISYEVPLGLSLLAVVLLAGSLSLSEIVEAQAGGW 171

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 260150986  174 LLLMSWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYTNIILMNALSTIVFLGPIHSlYLPH 253
Cdd:pfam00146 172 FIPLQPLAFIVFFIAALAETNRAPFDLPEAESELVAGFHTEYSGMRFALFFLAEYANMFLMSALAVTLFLGGWLG-PFPL 250

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*.
gi 260150986  254 VYTTDFMIKTLMLTSLFLWIRASYPRFRYDQLMHLLWKNFLPLTLA 299
Cdd:pfam00146 251 PGLLWFLLKVFFVFFLFIWIRATLPRFRYDQLMRLGWKVLLPLSLA 296
ND1 MTH00195
NADH dehydrogenase subunit 1; Provisional
 16-313 3.13e-114

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214452  Cd Length: 307  Bit Score: 332.48  E-value: 3.13e-114
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 260150986  16 AMAFLTLVERKILGYMQLRKGPNIVGPYGILQPFADAMKLFIKEPLRPLATSTSLFIIAPTLSLMLAFSLWIPLPMPHPL 95
Cdd:MTH00195  18 AVAFFTLLERKILGYIQLRKGPNKVGPYGLLQPIADAVKLFIKEPVKPSTSSLWLFFFAPVLALALALILWVPIPSPFGF 97

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 260150986  96 INMNMGMLFILAISSLSVYSILWSGWASNSKYSMFGALRAIAQTISYEVTMAIILLSVLLMNGSFSLQFLITTQEHTWLL 175
Cdd:MTH00195  98 SSINLSVLFFLCVSSLSVYSILGSGWASNSKYALLGAIRAVAQTISYEVSMGLIILCPICLAGSFDFTIMVISQGFSWVI 177

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 260150986 176 LMSWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYTNIILMNALSTIVFLGPIHSLYlphvy 255
Cdd:MTH00195 178 LLCPPISFMWYVSTLAETNRAPFDFAEGESELVSGFNVEYAGGPFALIFMAEYSNIIFMSVLTTILFLGGGGTII----- 252

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 260150986 256 ttdFMIKTLMLTSLFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCTWHISIPIFMAS 313
Cdd:MTH00195 253 ---VALKSLFLSFCFLWVRGSLPRFRYDQLMHLTWKCYLPLILSLLIPLAAIPFALNS 307
ND1 MTH00193
NADH dehydrogenase subunit 1; Provisional
 18-311 2.59e-113

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177241  Cd Length: 306  Bit Score: 330.19  E-value: 2.59e-113
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 260150986  18 AFLTLVERKILGYMQLRKGPNIVGPYGILQPFADAMKLFIKEPLRPLATSTSLFIIAPTLSLMLAFSLWIPLPMPHPLIN 97
Cdd:MTH00193  20 AFLTLLERKVLGYIQIRKGPNKVGFMGILQPFSDAIKLFTKEQTYPLMSNYLLYYFSPVFSLFLSLLIWLIYPYLFNLIS 99

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 260150986  98 MNMGMLFILAISSLSVYSILWSGWASNSKYSMFGALRAIAQTISYEVTMAIILLSVLLMNGSFSLQFLITTQEHTWLLLM 177
Cdd:MTH00193 100 FNLGILFFLCCSSLGVYTVMIAGWSSNSKYSLLGSLRSVAQTISYEVSLALILLSFIFLIGSFNLLDFMNYQKYIWFIFF 179

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 260150986 178 SWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYTNIILMNALSTIVFLGPIHSLYLphvytt 257
Cdd:MTH00193 180 SFPLFLIWFVSCLAETNRTPFDFAEGESELVSGFNVEYSSGGFALIFLAEYSSILFMSMLFVLMFLGGDLLSLL------ 253

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....
gi 260150986 258 dFMIKTLMLTSLFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCTWHISIPIFM 311
Cdd:MTH00193 254 -FYLKLLFISFLFIWVRGTLPRFRYDKLMYLAWKSFLPLSLNYLLFFFGLKIFL 306
ND1 MTH00225
NADH dehydrogenase subunit 1; Provisional
 16-307 4.91e-109

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214465  Cd Length: 305  Bit Score: 319.29  E-value: 4.91e-109
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 260150986  16 AMAFLTLVERKILGYMQLRKGPNIVGPYGILQPFADAMKLFIKEPLRPLATSTSLFIIAPTLSLMLAFSLWIPLPMPHPL 95
Cdd:MTH00225  17 SVAFYTLLERKVLGYIQLRKGPNKVGLMGLPQPFADALKLFTKEQTKPQLSNKLPYYIAPILSLILSLILWSLYPSMFSI 96

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 260150986  96 INMNMGMLFILAISSLSVYSILWSGWASNSKYSMFGALRAIAQTISYEVTMAIILLSVLLMNGSFSLQFLITTQEHTWLL 175
Cdd:MTH00225  97 YSFKFGILFFLCISSLNVYTILLAGWSSNSKYALLGALRAVAQTISYEVSMALILLSIVFLVLTYNLFDFSYNQKYFWFM 176

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 260150986 176 LMSWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYTNIILMNALSTIVFLGpihSLYLPHVY 255
Cdd:MTH00225 177 FVLFPLFFCWMISMLAETNRAPFDFAEGESELVSGFNIEYSSGGFALIFMAEYGSILFMSMLTSILFFG---GFFVTIDL 253

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|..
gi 260150986 256 TtdFMIKTLMLTSLFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCTWHISI 307
Cdd:MTH00225 254 F--LILKIMLLAFWFIWVRGVLPRMRYDKLMSLTWKSFLPLSLAYLFMVLII 303
ND1 MTH00054
NADH dehydrogenase subunit 1; Provisional
 16-317 7.02e-107

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177127  Cd Length: 324  Bit Score: 314.36  E-value: 7.02e-107
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 260150986  16 AMAFLTLVERKILGYMQLRKGPNIVGPYGILQPFADAMKLFIKEPLRPLATSTSLFIIAPTLSLMLAFSLW--IPLPMPH 93
Cdd:MTH00054  18 SIAYLTLAERKVLGYIQCRKGPNVVGVYGLLQPLADGLKLFTKEIIIPNHANIFIYIMAPILSLTLAFIAWgvIPYGEGV 97

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 260150986  94 PLINMNMGMLFILAISSLSVYSILWSGWASNSKYSMFGALRAIAQTISYEVTMAIILLSVLLMNGSFSLQFLITTQEHTW 173
Cdd:MTH00054  98 VLSDLGIGILYLFAVSSISVYAVLMSGWSSNSKYAFLGAIRAAAQMISYEVSIGLIIISVVLCVGSLNLTEIVLAQKNIW 177

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 260150986 174 LLLMSWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYTNIILMNALSTIVFLGPIHSLYLPH 253
Cdd:MTH00054 178 FIFPLFPAAIMFFVSALAETNRVPFDLTEGESELVSGFNVEYSSMSFALFFLAEYCHIILMSTFGVILFLGGWLVISGPT 257

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 260150986 254 VYTTDFM---IKTLMLTSLFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCTWHISIPIFMASIPPY 317
Cdd:MTH00054 258 SYFSNFVwfgIKIALIIFLFIWIRASYPRIRYDQLMALLWKSYLPLSLAFVVLVSGILIGFNALPPF 324
NuoH COG1005
NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH: ...
 16-299 1.53e-106

NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 1 (chain H) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440629  Cd Length: 329  Bit Score: 313.61  E-value: 1.53e-106
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 260150986  16 AMAFLTLVERKILGYMQLRKGPNIVGPYGILQPFADAMKLFIKEPLRPLATSTSLFIIAPTLSLMLAFSLWIPLPM--PH 93
Cdd:COG1005   25 LAAYLTWAERKVLARMQDRIGPNRVGPFGLLQPLADGLKLLFKEDIIPAGADKFLFLLAPILAFIPALLAFAVIPFgpGL 104

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 260150986  94 PLINMNMGMLFILAISSLSVYSILWSGWASNSKYSMFGALRAIAQTISYEVTMAIILLSVLLMNGSFSLQFLITTQEHT- 172
Cdd:COG1005  105 VLADLNVGLLYVLAVSSLGVYGIILAGWASNNKYSLLGALRAAAQMISYEIPLGLSLLGVVLLAGSLNLSEIVEAQAGGl 184

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 260150986 173 WLLLMSWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYTNIILMNALSTIVFLGPIHSLYLP 252
Cdd:COG1005  185 WFILPQPLAFVVFFIAALAETNRAPFDLPEAESELVAGYHTEYSGMKFALFFLAEYANMFLVSALATTLFLGGWLGPFPI 264

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|..
gi 260150986 253 HVYTTD-----FMIKTLMLTSLFLWIRASYPRFRYDQLMHLLWKNFLPLTLA 299
Cdd:COG1005  265 LPLGGLpgilwFLLKTLFFIFFFIWVRATLPRYRYDQLMRLGWKVLLPLSLV 316
ND1 MTH00216
NADH dehydrogenase subunit 1; Provisional
 16-316 1.38e-102

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 164761  Cd Length: 327  Bit Score: 303.58  E-value: 1.38e-102
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 260150986  16 AMAFLTLVERKILGYMQLRKGPNIVGPYGILQPFADAMKLFIKEPLRPLATSTSLFIIAPTLSLMLAFSLWIPLPMPHPL 95
Cdd:MTH00216  22 AVAYLTLAERKVLGYMQARKGPNVVGVYGLLQPFADGVKLFTKEMVIPHHANLFVYIVAPVLSFTLALIVWGVIPYERGV 101

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 260150986  96 I--NMNMGMLFILAISSLSVYSILWSGWASNSKYSMFGALRAIAQTISYEVTMAIILLSVLLMNGSFSLQFLITTQEH-T 172
Cdd:MTH00216 102 LisDFKIGILYILAISSISVYAILMSGWGSNSKYAFLGAIRAAAQMISYEVSIGLIIISVLLCVGSLSITEIVLAQNNgI 181

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 260150986 173 WLLLMSWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYTNIILMNALSTIVFLG----PIHS 248
Cdd:MTH00216 182 WFFFPLFPVAIMFFASALAETNRAPFDLTEGESELVSGYNVEYASMSFALFFLAEYAHIILMSCLTTILFLGgwlsPIKY 261

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 260150986 249 LYLPHVYttdFMIKTLMLTSLFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCTWHISIPIFMASIPP 316
Cdd:MTH00216 262 FKGGAGW---FGLKVVFIIFLFIWVRASFPRIRYDQLMALLWKSYLPLSLGVVIFVASVLFGFNGPPP 326
PRK06076 PRK06076
NADH-quinone oxidoreductase subunit NuoH;
18-299 4.99e-102

NADH-quinone oxidoreductase subunit NuoH;


Pssm-ID: 235692  Cd Length: 322  Bit Score: 302.11  E-value: 4.99e-102
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 260150986  18 AFLTLVERKILGYMQLRKGPNIVGPYGILQPFADAMKLFIKEPLRPLATSTSLFIIAPTLSLMLAFSLWIPLPM-PH-PL 95
Cdd:PRK06076  28 AFLIWFERKVLARMQLRYGPNRVGPFGLLQLVADGIKLLFKEDIIPAGADKVLFLLAPVIAFIPAFLAWAVIPFgPElVI 107

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 260150986  96 INMNMGMLFILAISSLSVYSILWSGWASNSKYSMFGALRAIAQTISYEVTMAIILLSVLLMNGSFSLQFLITTQEHTWLL 175
Cdd:PRK06076 108 ADLNVGILYILAISSLGVYGVILAGWASNNKYALLGALRAAAQMISYEVPLGLSLLAVVLLAGSLNLSDIVEAQFLSWNI 187

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 260150986 176 LMSWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYTNIILMNALSTIVFLG------PIHSL 249
Cdd:PRK06076 188 IPQPPAFVVFFIAAVAETNRHPFDLPEAESELVAGYHTEYSGMKFGLFFLGEYINMILVSALITTLFLGgwlppfPLGGG 267

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|
gi 260150986 250 YLPHVYttdFMIKTLMLTSLFLWIRASYPRFRYDQLMHLLWKNFLPLTLA 299
Cdd:PRK06076 268 IPGAIW---FVLKVAFFVFLFIWLRATLPRYRYDQLMRLGWKVLLPLSLV 314
ND1 MTH00010
NADH dehydrogenase subunit 1; Validated
 16-311 1.23e-94

NADH dehydrogenase subunit 1; Validated


Pssm-ID: 164586  Cd Length: 311  Bit Score: 282.82  E-value: 1.23e-94
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 260150986  16 AMAFLTLVERKILGYMQLRKGPNIVGPYGILQPFADAMKLFIKEPLRPLATSTSLFIIAPTLSLMLAFSLWIPLPMPHPL 95
Cdd:MTH00010  19 AMAFYTLLERKALGYFQLRKGPNKVGLAGIPQPFADAIKLFTKEQTKPSPANITPFLGAPMMSLILALLLWSLYPHKHPS 98

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 260150986  96 INMNMGMLFILAISSLSVYSILWSGWASNSKYSMFGALRAIAQTISYEVTMAIILLSVLLMNGSFSLQFLITTQeHTWLL 175
Cdd:MTH00010  99 FFLKFSILLFLCVSSMNVYTTLGAGWTSNSKYALLGALRSVAQTISYEVSMSLILLSALLILQTFSFSKIIMSQ-YSWIL 177

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 260150986 176 LMSWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYTNIILMNALSTIVFLGPIhslylPHVY 255
Cdd:MTH00010 178 LMIIPLTVSWFITNLAETNRTPFDFAEGESELVSGFNVEYSSGLFALIFMAEYANILIMSLFTSVFFTSFI-----PSIF 252

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 260150986 256 TTDFMI--KTLMLTSLFLWIRASYPRFRYDQLMHLLWKNFLPLTLAlcTWHISIPIFM 311
Cdd:MTH00010 253 ISDLMLilKTVFLAFLFIWIRATFPRMRYDRLMNLTWKSFLPMSLT--SLMISIPIMF 308
ND1 MTH00029
NADH dehydrogenase subunit 1; Provisional
 16-316 6.04e-86

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177108  Cd Length: 343  Bit Score: 261.88  E-value: 6.04e-86
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 260150986  16 AMAFLTLVERKILGYMQLRKGPNIVGPYGILQPFADAMKLFIKEPLRPLATSTSLFIIAPTLSLMLAFSLWIPLPMPHP- 94
Cdd:MTH00029  23 SVAYLTLAERKVLGLMQNRKGPAIVGPWGLVQPIADGVKLLTKELIIPSQANKFLYYIAPIISFTLAILAWAIVTMDQGv 102

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 260150986  95 -LINMNMGMLFILAISSLSVYSILWSGWASNSKYSMFGALRAIAQTISYEVTMAIILLSVLLMNGSFSLQFLITTQEHTW 173
Cdd:MTH00029 103 fLSDLDVGVLYFLAISSLSVYAILLSGWASNSRYPFLGAIRCAAQMISYEVAIGLIIISVILCVGSLNISEIVISQRSVW 182

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 260150986 174 LLLMSWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYTNIILMNALSTIVFLG----PIHSL 249
Cdd:MTH00029 183 LIIPLFPAAIMFMVASLAETARAPFDLTEGESELVSGFNVEYSSLSFALFFLAEYSNIILMSCMMTIFFLGgwlsPLDGI 262

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 260150986 250 YLPHVYTTD------------FMIKTLMLTSLFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCTWHISIPIFMASIPP 316
Cdd:MTH00029 263 PTPPEAFSIfeqiasskssfwFFTKSSIFILFFIWSRASFPRIRYDQLMKLLWKTYLPLSLGLVILTAGILIGFNGVPP 341
ND1 MTH00090
NADH dehydrogenase subunit 1; Provisional
 16-298 1.50e-61

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177153  Cd Length: 284  Bit Score: 197.43  E-value: 1.50e-61
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 260150986  16 AMAFLTLVERKILGYMQLRKGPNIVGPYGILQPFADAMKLFIKEPLRPLATSTSLFIIAPTLSLMLAFSLWIPLPMPHPL 95
Cdd:MTH00090  12 AIAFITLYERHLLGSSQNRLGPNKVSFMGVLQALLDGVKLLKKEQMLPLNSSDLSFLLVPGVSFVVMYLEWFVLPYFFDF 91

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 260150986  96 INMNMGMLFILAISSLSVYSILWSGWASNSKYSMFGALRAIAQTISYEVTMAIILLSVLLMNGSFSLQFlittqEHTWLL 175
Cdd:MTH00090  92 LSFEYSLLFFLCLIGFSVYTTLISGIVSKSKYGFLGALRASSQSISYEIAFSLYLLSIMLHNNSFSFVS-----SFSLSL 166

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 260150986 176 LMSWplaMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYTNIILMNALSTIVFLGPihslylphvy 255
Cdd:MTH00090 167 FVIY---LPFLIMIIAELNRAPFDFSEGESELVSGYNVEYSSVAFVLLFLSEYGSLIFFSVLTSVLFFKF---------- 233

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|...
gi 260150986 256 ttdFMIKTLMLTSLFLWIRASYPRFRYDQLMHLLWKNFLPLTL 298
Cdd:MTH00090 234 ---SFLMLFLIFSLLIFIRSSYPRFRYDMMMSMFWFKFLPLSL 273
ndhA CHL00032
NADH dehydrogenase subunit 1
 24-298 1.06e-50

NADH dehydrogenase subunit 1


Pssm-ID: 214341  Cd Length: 363  Bit Score: 171.67  E-value: 1.06e-50
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 260150986  24 ERKILGYMQLRKGPNIVGPYGILQPFADAMKLFIKEPLRPLATSTSLFIIAPTLSLMLAFSLWIPLPMPHPLI--NMNMG 101
Cdd:CHL00032  51 EREISAGIQQRIGPEYAGPLGILQALADGTKLLFKEDLLPSRGDIRLFSIGPSIAVISILLSYLVIPFGYHLVlaDLSIG 130

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 260150986 102 MLFILAISSLSVYSILWSGWASNSKYSMFGALRAIAQTISYEVTMAIILLSVLLMNGSFSLQFLITTQEHTWLLlmSWPL 181
Cdd:CHL00032 131 VFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISLLSNSLSTVDIVEAQSKYGFW--GWNL 208

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 260150986 182 ------AMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYTNIILMNALSTIVFLGPIHsLYLPHVY 255
Cdd:CHL00032 209 wrqpigFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGWN-LSIPYIF 287

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 260150986 256 TTDF---------------MIKTLMLTSLFLWI----RASYPRFRYDQLMHLLWKNFLPLTL 298
Cdd:CHL00032 288 IPELfeinktggvfgttigIFITLAKTYLFLFIsittRWTLPRLRMDQLLNLGWKFLLPISL 349
ND1 MTH00058
NADH dehydrogenase subunit 1; Provisional
 18-298 4.67e-49

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177130  Cd Length: 293  Bit Score: 165.48  E-value: 4.67e-49
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 260150986  18 AFLTLVERKILGYMQLRKGPNIVGPYGILQPFADAMKLFIKEPLRPLATSTSLFIIAPTLSLMLAFSLWIPLPMPHPLIN 97
Cdd:MTH00058  19 AFFILGERKILGYIQLRKGPNKVGIVGLLQSFADLLKLVVKFKVYGFQSRSWFSLFGVFLLVLLVVFYCFIYGSYYSGSY 98

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 260150986  98 MNMGMLFILAISSLSVYSILWSGWASNSKYSMFGALRAIAQTISYEVTMAIILLSVLLMNGSFSLQFLITTQEHTWLLLm 177
Cdd:MTH00058  99 SSLSLLWFLVVTSFSSYSLLCVGWGSYNKYSLLSSIRSAFGSVSFEACFMCIVIFCGLCYGSYSLVDFYYSGWLSVLLF- 177

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 260150986 178 sWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYTNIILMNALSTIVFLGpihslylphvyTT 257
Cdd:MTH00058 178 -PLIYILWLVCILCETNRTPFDYGESESELVSGFNTEYSGIYFTCLFACEYLIIFIFSWLGSVLFFG-----------GG 245

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|.
gi 260150986 258 DFMIKTLMLTSLFLWIRASYPRFRYDQLMHLLWKNFLPLTL 298
Cdd:MTH00058 246 FVSIMLLFHLLFFMWARATLPRVRYDYFVNFFWEYCLVLLI 286
HyfC COG0650
Formate hydrogenlyase subunit HyfC [Energy production and conversion];
19-303 1.88e-31

Formate hydrogenlyase subunit HyfC [Energy production and conversion];


Pssm-ID: 440415  Cd Length: 303  Bit Score: 119.52  E-value: 1.88e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 260150986  19 FLTLVERKILGYMQLRKGPnivgpyGILQPFADAMKLFIKEPLRPlATSTSLFIIAPTLSL--MLAFSLWIPLPMPHPLI 96
Cdd:COG0650   20 LLLGIIRKVKARLQGRRGP------PILQPYYDLLKLLRKETVVP-ETASWLFRAAPYVALaaMLLAALLVPVLTTGPPL 92

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 260150986  97 NMNMGMLFILAISSLSVYSILWSGWASNSKYSMFGALRAIAQTISYEVTMAIILLSVLLMNGSFSLQFLITTQEHTWLLL 176
Cdd:COG0650   93 SFSGDLIVLVYLLALARFFLALAGLDSGSPFGGIGASREMTLSALAEPPLLLVLFALALLAGSTSLSDIVAYQAAHGPLL 172

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 260150986 177 MS---WPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYTNIILMNALSTIVFLGPIHSLYLPh 253
Cdd:COG0650  173 LSpslLLAAIAFFIVLLAETGRIPFDIPETHLELHEGMLLEYSGRHLALLELAAALKLFVLLSLFVNLFLPWGIALTLL- 251

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|
gi 260150986 254 VYTTDFMIKTLMLTSLFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCTW 303
Cdd:COG0650  252 LALLLFLLKLLVLAVLLAVIEASTARLRLFRVPDFLWTAFLLALLALLLA 301
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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