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Conserved domains on  [gi|259090405]
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Chain A, Lamin-B1

Protein Classification

lamin tail domain-containing protein( domain architecture ID 10469225)

lamin tail domain (LTD)-containing protein similar to Homo sapiens lamin tail domain-containing protein 1 (LMNTD1)

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
LTD pfam00932
Lamin Tail Domain; The lamin-tail domain (LTD), which has an immunoglobulin (Ig) fold, is ...
 25-129 3.13e-20

Lamin Tail Domain; The lamin-tail domain (LTD), which has an immunoglobulin (Ig) fold, is found in Nuclear Lamins, Chlo1887 from Chloroflexus, and several bacterial proteins where it occurs with membrane associated hydrolases of the metallo-beta-lactamase,synaptojanin, and calcineurin-like phosphoesterase superfamilies.


:

Pssm-ID: 460003 [Multi-domain]  Cd Length: 108  Bit Score: 79.77  E-value: 3.13e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 259090405   25 TGNVCIEEIDVDG-----KFIRLKNTSEQDQP*GGWE*IRKIGDTsvsYKYTSRYVLKAGQTVTIWAANAGVTAS----P 95
Cdd:pfam00932   4 TGDVVISEVVYDGsggndEFIELYNTGSKAVDLSGWKLQDASGGT---YTFPNGTTLAPGQTVVVWTGSGTNSATagywG 80

                          90       100       110
                  ....*....|....*....|....*....|....
gi 259090405   96 PTDLIWKNQNSWgtgedvkVILKNSQGEEVAQRS 129
Cdd:pfam00932  81 PSNAVWNNGGDA-------VALYDANGELVDSVG 107
 
Name Accession Description Interval E-value
LTD pfam00932
Lamin Tail Domain; The lamin-tail domain (LTD), which has an immunoglobulin (Ig) fold, is ...
 25-129 3.13e-20

Lamin Tail Domain; The lamin-tail domain (LTD), which has an immunoglobulin (Ig) fold, is found in Nuclear Lamins, Chlo1887 from Chloroflexus, and several bacterial proteins where it occurs with membrane associated hydrolases of the metallo-beta-lactamase,synaptojanin, and calcineurin-like phosphoesterase superfamilies.


Pssm-ID: 460003 [Multi-domain]  Cd Length: 108  Bit Score: 79.77  E-value: 3.13e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 259090405   25 TGNVCIEEIDVDG-----KFIRLKNTSEQDQP*GGWE*IRKIGDTsvsYKYTSRYVLKAGQTVTIWAANAGVTAS----P 95
Cdd:pfam00932   4 TGDVVISEVVYDGsggndEFIELYNTGSKAVDLSGWKLQDASGGT---YTFPNGTTLAPGQTVVVWTGSGTNSATagywG 80

                          90       100       110
                  ....*....|....*....|....*....|....
gi 259090405   96 PTDLIWKNQNSWgtgedvkVILKNSQGEEVAQRS 129
Cdd:pfam00932  81 PSNAVWNNGGDA-------VALYDANGELVDSVG 107
 
Name Accession Description Interval E-value
LTD pfam00932
Lamin Tail Domain; The lamin-tail domain (LTD), which has an immunoglobulin (Ig) fold, is ...
 25-129 3.13e-20

Lamin Tail Domain; The lamin-tail domain (LTD), which has an immunoglobulin (Ig) fold, is found in Nuclear Lamins, Chlo1887 from Chloroflexus, and several bacterial proteins where it occurs with membrane associated hydrolases of the metallo-beta-lactamase,synaptojanin, and calcineurin-like phosphoesterase superfamilies.


Pssm-ID: 460003 [Multi-domain]  Cd Length: 108  Bit Score: 79.77  E-value: 3.13e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 259090405   25 TGNVCIEEIDVDG-----KFIRLKNTSEQDQP*GGWE*IRKIGDTsvsYKYTSRYVLKAGQTVTIWAANAGVTAS----P 95
Cdd:pfam00932   4 TGDVVISEVVYDGsggndEFIELYNTGSKAVDLSGWKLQDASGGT---YTFPNGTTLAPGQTVVVWTGSGTNSATagywG 80

                          90       100       110
                  ....*....|....*....|....*....|....
gi 259090405   96 PTDLIWKNQNSWgtgedvkVILKNSQGEEVAQRS 129
Cdd:pfam00932  81 PSNAVWNNGGDA-------VALYDANGELVDSVG 107
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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