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Conserved domains on  [gi|25814902|gb|AAN75661|]
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cytochrome b, partial (mitochondrion) [Mastomys verheyeni]

Protein Classification

cytochrome b( domain architecture ID 11475898)

cytochrome b is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), a respiratory chain that generates an electrochemical potential coupled to ATP synthesis

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
 1-379 0e+00

cytochrome b; Provisional


:

Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 794.61  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25814902    1 MTNIRKTHPLLKIINHSFIDLPAPSNISSWWNFGSLLGICLMIQIATGLFLAMHYTSDTSTAFSSVTHICRDVNYGWLIR 80
Cdd:MTH00100   1 MTNIRKTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIR 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25814902   81 YLHANGASMFFICLFLHVGRGVYYGSFTFMETWNIGVILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTL 160
Cdd:MTH00100  81 YLHANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25814902  161 VEWIWGGFSVDKATLTRFFAFHFILPFVIAALVIVHLLFLHETGSNNPTGLDSDSDKIPFHPYYTIKDILGVIMMILFLM 240
Cdd:MTH00100 161 VEWIWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLM 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25814902  241 TLVLFFPDLLGDPDNYMPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALFLSILVLMFLPFLHTSKQRSLMFRPI 320
Cdd:MTH00100 241 LLVLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIIPLLHTSKQRSMMFRPL 320

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 25814902  321 TQTLYWILVANLFILTWIGGQPVDHPFIIIGQLASISYFSIILILMPISGMIENSMLKW 379
Cdd:MTH00100 321 SQCLFWLLVADLLTLTWIGGQPVEHPFIIIGQLASILYFLIILILMPIASLIENNLLKW 379
 
Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
 1-379 0e+00

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 794.61  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25814902    1 MTNIRKTHPLLKIINHSFIDLPAPSNISSWWNFGSLLGICLMIQIATGLFLAMHYTSDTSTAFSSVTHICRDVNYGWLIR 80
Cdd:MTH00100   1 MTNIRKTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIR 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25814902   81 YLHANGASMFFICLFLHVGRGVYYGSFTFMETWNIGVILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTL 160
Cdd:MTH00100  81 YLHANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25814902  161 VEWIWGGFSVDKATLTRFFAFHFILPFVIAALVIVHLLFLHETGSNNPTGLDSDSDKIPFHPYYTIKDILGVIMMILFLM 240
Cdd:MTH00100 161 VEWIWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLM 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25814902  241 TLVLFFPDLLGDPDNYMPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALFLSILVLMFLPFLHTSKQRSLMFRPI 320
Cdd:MTH00100 241 LLVLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIIPLLHTSKQRSMMFRPL 320

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 25814902  321 TQTLYWILVANLFILTWIGGQPVDHPFIIIGQLASISYFSIILILMPISGMIENSMLKW 379
Cdd:MTH00100 321 SQCLFWLLVADLLTLTWIGGQPVEHPFIIIGQLASILYFLIILILMPIASLIENNLLKW 379
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-373 3.25e-137

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 396.47  E-value: 3.25e-137
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25814902   1 MTNIRKTHPLLKIIN---------HSFIDLPAPSNISSWWNFGSLLGICLMIQIATGLFLAMHYTSDTSTAFSSVTHICR 71
Cdd:COG1290   1 MSTTKKASGLADWLDerlplaslvREHLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMR 80

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25814902  72 DVNYGWLIRYLHANGASMFFICLFLHVGRGVYYGSFTFME--TWNIGVILLFAVMATAFMGYVLPWGQMSFWGATVITNL 149
Cdd:COG1290  81 DVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGAYKKPRelNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGL 160

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25814902 150 LSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFH-FILPFVIAALVIVHLLFLHETGSNNPTGLDSDS----DKIPFHPYY 224
Cdd:COG1290 161 FGAIPVIGTWLVTWLFGGEFPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGPERKKtekvDGVPFHPYY 240

                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25814902 225 TIKDILGVIMMILFLMTLVLFFPDllGDPDNYMPANPLNTPPHIKPEWYFLFAYAILRSIP--NKLGGVLALFLSILVLM 302
Cdd:COG1290 241 TVKDGFGFFVFLGVFALLAFFFPI--NPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLF 318

                       330       340       350       360       370       380       390
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 25814902 303 FLPFLHTSKQRSLMFRPITQTLYWILVANLFILTWIGGQPVdhPFIIIGQLASISYFSIILILMPISGMIE 373
Cdd:COG1290 319 LLPFLDRSPVRSPRYRPVRTALGVAFIVFFIVLTILGANPP--IATLLGSINTVTYFAFFLIVLPILAFIE 387
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 9-206 1.89e-94

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 280.79  E-value: 1.89e-94
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25814902   9 PLLKIINHSFIDLPAPSNISSWWNFGSLLGICLMIQIATGLFLAMHYTSDTSTAFSSVTHICRDVNYGWLIRYLHANGAS 88
Cdd:cd00284   1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25814902  89 MFFICLFLHVGRGVYYGSF--TFMETWNIGVILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWG 166
Cdd:cd00284  81 MFFLMLYLHIFRGLYYGSYkkPRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWG 160

                       170       180       190       200
                ....*....|....*....|....*....|....*....|
gi 25814902 167 GFSVDKATLTRFFAFHFILPFVIAALVIVHLLFLHETGSN 206
Cdd:cd00284 161 GFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
18-204 3.90e-85

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 256.54  E-value: 3.90e-85
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25814902    18 FIDLPAPSNISSWWNFGSLLGICLMIQIATGLFLAMHYTSDTSTAFSSVTHICRDVNYGWLIRYLHANGASMFFICLFLH 97
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25814902    98 VGRGVYYGSF--TFMETWNIGVILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATL 175
Cdd:pfam00033  81 IFRGLYYGGFsyPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160

                         170       180
                  ....*....|....*....|....*....
gi 25814902   176 TRFFAFHFILPFVIAALVIVHLLFLHETG 204
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 229-339 1.06e-09

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 56.73  E-value: 1.06e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25814902   229 ILGVIMMILFLMTLVlffPDLLGDPdnympANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALFLSILVLMFLPFLH 308
Cdd:TIGR01156  44 ILGTIACVVGLAVLD---PAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIE 115

                          90       100       110
                  ....*....|....*....|....*....|..
gi 25814902   309 T-SKQRSLMFRPITQTLYwiLVANLFILtWIG 339
Cdd:TIGR01156 116 NvNKFQNPFRRPVATTVF--LFGTVVAL-WLG 144
 
Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
 1-379 0e+00

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 794.61  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25814902    1 MTNIRKTHPLLKIINHSFIDLPAPSNISSWWNFGSLLGICLMIQIATGLFLAMHYTSDTSTAFSSVTHICRDVNYGWLIR 80
Cdd:MTH00100   1 MTNIRKTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIR 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25814902   81 YLHANGASMFFICLFLHVGRGVYYGSFTFMETWNIGVILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTL 160
Cdd:MTH00100  81 YLHANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25814902  161 VEWIWGGFSVDKATLTRFFAFHFILPFVIAALVIVHLLFLHETGSNNPTGLDSDSDKIPFHPYYTIKDILGVIMMILFLM 240
Cdd:MTH00100 161 VEWIWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLM 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25814902  241 TLVLFFPDLLGDPDNYMPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALFLSILVLMFLPFLHTSKQRSLMFRPI 320
Cdd:MTH00100 241 LLVLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIIPLLHTSKQRSMMFRPL 320

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 25814902  321 TQTLYWILVANLFILTWIGGQPVDHPFIIIGQLASISYFSIILILMPISGMIENSMLKW 379
Cdd:MTH00100 321 SQCLFWLLVADLLTLTWIGGQPVEHPFIIIGQLASILYFLIILILMPIASLIENNLLKW 379
CYTB MTH00119
cytochrome b; Provisional
 1-379 0e+00

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 711.67  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25814902    1 MTNIRKTHPLLKIINHSFIDLPAPSNISSWWNFGSLLGICLMIQIATGLFLAMHYTSDTSTAFSSVTHICRDVNYGWLIR 80
Cdd:MTH00119   2 APNLRKSHPLLKIINNSLIDLPTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIR 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25814902   81 YLHANGASMFFICLFLHVGRGVYYGSFTFMETWNIGVILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTL 160
Cdd:MTH00119  82 NLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTL 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25814902  161 VEWIWGGFSVDKATLTRFFAFHFILPFVIAALVIVHLLFLHETGSNNPTGLDSDSDKIPFHPYYTIKDILGVIMMILFLM 240
Cdd:MTH00119 162 VEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLL 241

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25814902  241 TLVLFFPDLLGDPDNYMPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALFLSILVLMFLPFLHTSKQRSLMFRPI 320
Cdd:MTH00119 242 TLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILILFLMPFLHTSKQRSMTFRPL 321

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 25814902  321 TQTLYWILVANLFILTWIGGQPVDHPFIIIGQLASISYFSIILILMPISGMIENSMLKW 379
Cdd:MTH00119 322 SQLLFWTLVANLLILTWIGSQPVEHPFIIIGQLASILYFTILLILFPLLGALENKMLNY 380
CYTB MTH00131
cytochrome b; Provisional
 1-380 0e+00

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 708.34  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25814902    1 MTNIRKTHPLLKIINHSFIDLPAPSNISSWWNFGSLLGICLMIQIATGLFLAMHYTSDTSTAFSSVTHICRDVNYGWLIR 80
Cdd:MTH00131   1 MASLRKTHPLLKIANDALVDLPAPSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIR 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25814902   81 YLHANGASMFFICLFLHVGRGVYYGSFTFMETWNIGVILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTL 160
Cdd:MTH00131  81 NLHANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25814902  161 VEWIWGGFSVDKATLTRFFAFHFILPFVIAALVIVHLLFLHETGSNNPTGLDSDSDKIPFHPYYTIKDILGVIMMILFLM 240
Cdd:MTH00131 161 VQWIWGGFSVDNATLTRFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLALT 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25814902  241 TLVLFFPDLLGDPDNYMPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALFLSILVLMFLPFLHTSKQRSLMFRPI 320
Cdd:MTH00131 241 SLALFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPL 320

                        330       340       350       360       370       380
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 25814902  321 TQTLYWILVANLFILTWIGGQPVDHPFIIIGQLASISYFSIILILMPISGMIENSMLKWN 380
Cdd:MTH00131 321 TQFLFWTLVADVLILTWIGGMPVEHPFIIIGQVASVLYFSLFLVLMPLAGWLENKALEWA 380
CYTB MTH00074
cytochrome b; Provisional
 1-379 0e+00

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 688.73  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25814902    1 MTNIRKTHPLLKIINHSFIDLPAPSNISSWWNFGSLLGICLMIQIATGLFLAMHYTSDTSTAFSSVTHICRDVNYGWLIR 80
Cdd:MTH00074   2 AHPIRKTHPLLKIINNSFIDLPTPSNLSSLWNFGSLLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMR 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25814902   81 YLHANGASMFFICLFLHVGRGVYYGSFTFMETWNIGVILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTL 160
Cdd:MTH00074  82 NIHANGASFFFICIYLHIGRGLYYGSYMYKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDTL 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25814902  161 VEWIWGGFSVDKATLTRFFAFHFILPFVIAALVIVHLLFLHETGSNNPTGLDSDSDKIPFHPYYTIKDILGVIMMILFLM 240
Cdd:MTH00074 162 VQWIWGGFSVDKATLTRFFAFHFLLPFLIAGASIIHLLFLHETGSNNPTGLNSNPDKVPFHPYFSYKDLLGFLIMLTALA 241

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25814902  241 TLVLFFPDLLGDPDNYMPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALFLSILVLMFLPFLHTSKQRSLMFRPI 320
Cdd:MTH00074 242 LLSLFSPNLLGDPDNFTPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVLALLASILILMLIPMLHTSKQRSLMFRPL 321

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 25814902  321 TQTLYWILVANLFILTWIGGQPVDHPFIIIGQLASISYFSIILILMPISGMIENSMLKW 379
Cdd:MTH00074 322 TQILFWLLVANTLILTWIGGQPVEDPFIEIGQAASILYFLLFIIIIPLTGWLENKLLKW 380
CYTB MTH00191
cytochrome b; Provisional
 4-368 0e+00

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 654.68  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25814902    4 IRKTHPLLKIINHSFIDLPAPSNISSWWNFGSLLGICLMIQIATGLFLAMHYTSDTSTAFSSVTHICRDVNYGWLIRYLH 83
Cdd:MTH00191   1 MRKTHPLLKIVNGSLIDLPSPSNISYWWNFGSLLGLCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIH 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25814902   84 ANGASMFFICLFLHVGRGVYYGSFTFMETWNIGVILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEW 163
Cdd:MTH00191  81 ANGASFFFICIYLHIGRGLYYGSYLNKETWNVGVILLILSMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGDDLVQW 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25814902  164 IWGGFSVDKATLTRFFAFHFILPFVIAALVIVHLLFLHETGSNNPTGLDSDSDKIPFHPYYTIKDILGVIMMILFLMTLV 243
Cdd:MTH00191 161 LWGGFSVDNATLTRFFTFHFLLPFLIAALSLIHLLFLHETGSNNPLGLNSDSDKIPFHPYFSYKDILGFFILLFLLLFLV 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25814902  244 LFFPDLLGDPDNYMPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALFLSILVLMFLPFLHTSKQRSLMFRPITQT 323
Cdd:MTH00191 241 LFSPNLLGDPENFIPANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVLALVMSILVLFLLPLLHTSKQRSNTFRPLTQV 320

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|....*
gi 25814902  324 LYWILVANLFILTWIGGQPVDHPFIIIGQLASISYFSIILILMPI 368
Cdd:MTH00191 321 VFWLWVANFILLTWLGGQPVEDPFILLGQISSFLYFFLFLLLFPL 365
CYTB MTH00156
cytochrome b; Provisional
 11-366 0e+00

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 626.81  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25814902   11 LKIINHSFIDLPAPSNISSWWNFGSLLGICLMIQIATGLFLAMHYTSDTSTAFSSVTHICRDVNYGWLIRYLHANGASMF 90
Cdd:MTH00156   1 LKIINNSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25814902   91 FICLFLHVGRGVYYGSFTFMETWNIGVILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSV 170
Cdd:MTH00156  81 FICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSV 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25814902  171 DKATLTRFFAFHFILPFVIAALVIVHLLFLHETGSNNPTGLDSDSDKIPFHPYYTIKDILGVIMMILFLMTLVLFFPDLL 250
Cdd:MTH00156 161 DNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25814902  251 GDPDNYMPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALFLSILVLMFLPFLHTSKQRSLMFRPITQTLYWILVA 330
Cdd:MTH00156 241 GDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSKFRGNQFYPINKILFWIFVN 320

                        330       340       350
                 ....*....|....*....|....*....|....*.
gi 25814902  331 NLFILTWIGGQPVDHPFIIIGQLASISYFSIILILM 366
Cdd:MTH00156 321 IVILLTWIGARPVEEPYILTGQILTILYFLYFIINP 356
CYTB MTH00145
cytochrome b; Provisional
 1-377 0e+00

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 616.53  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25814902    1 MTNIRKTHPLLKIINHSFIDLPAPSNISSWWNFGSLLGICLMIQIATGLFLAMHYTSDTSTAFSSVTHICRDVNYGWLIR 80
Cdd:MTH00145   2 LSPLRKSHPVLKVVNGSLYDLPAPVNLSIWWNFGSLLGLCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLLR 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25814902   81 YLHANGASMFFICLFLHVGRGVYYGSFTFMETWNIGVILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTL 160
Cdd:MTH00145  82 SLHANGASFFFICIYLHIGRGLYYGSYLMQHTWNIGVTLLLLSMGTAFLGYVLPWGQMSFWGATVITNLLSAIPYVGKML 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25814902  161 VEWIWGGFSVDKATLTRFFAFHFILPFVIAALVIVHLLFLHETGSNNPTGLDSDSDKIPFHPYYTIKDILGVIMMILFLM 240
Cdd:MTH00145 162 VEWVWGGFSVGNATLKRFFSLHFLLPFVILGLSVLHLLFLHETGSNNPLGLDSDGDKVPFHPYYTIKDLVGFVVLLFLLV 241

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25814902  241 TLVLFFPDLLGDPDNYMPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALFLSILVLMFLPFLHTSKQRSLMFRPI 320
Cdd:MTH00145 242 FLVLFFPNLLGDPENFIPANPMVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIVILFFLPLLHVGKFRSLSFYPL 321

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 25814902  321 TQTLYWILVANLFILTWIGGQPVDHPFIIIGQLASISYFSIILILmPISGMIENSML 377
Cdd:MTH00145 322 NQVLFWIFVGNFFILTWIGACPVEEPYETIGQVFTVLYFLFFLIL-PLVQKLWDNIL 377
CYTB MTH00034
cytochrome b; Validated
 4-377 0e+00

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 609.01  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25814902    4 IRKTHPLLKIINHSFIDLPAPSNISSWWNFGSLLGICLMIQIATGLFLAMHYTSDTSTAFSSVTHICRDVNYGWLIRYLH 83
Cdd:MTH00034   4 LRKSHPLFKILNSSLIDLPSPSNLSIWWNFGSLLGLCLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIH 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25814902   84 ANGASMFFICLFLHVGRGVYYGSFTFMETWNIGVILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEW 163
Cdd:MTH00034  84 ANGASLFFICLYFHIGRGLYYGSYVNIETWNIGVILFLLTMLTAFVGYVLPWGQMSFWAATVITNLVSAVPYIGTDIVQW 163

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25814902  164 IWGGFSVDKATLTRFFAFHFILPFVIAALVIVHLLFLHETGSNNPTGLDSDSDKIPFHPYYTIKDILGVIMMILFLMTLV 243
Cdd:MTH00034 164 IWGGFSVDNATLTRFFAFHFLFPFIIAALSIIHLLFLHQTGSNNPTGLNSNYDKVPFHTYFTTKDLVGFLILFAALSSLA 243

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25814902  244 LFFPDLLGDPDNYMPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALFLSILVLMFLPFLHTSKQRSLMFRPITQT 323
Cdd:MTH00034 244 LLFPTALNDPENFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVAAILVLFLVPILHTSNNQSSTFRPLSQI 323

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....
gi 25814902  324 LYWILVANLFILTWIGGQPVDHPFIIIGQLASISYFSIILILMPISGMIENSML 377
Cdd:MTH00034 324 AFWLLIATFFILTWIGSQPVEYPFILLGQVASVLYFSLFLFFFPLISYLENKLI 377
CYTB MTH00016
cytochrome b; Validated
 4-378 0e+00

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 575.09  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25814902    4 IRKTHPLLKIINHSFIDLPAPSNISSWWNFGSLLGICLMIQIATGLFLAMHYTSDTSTAFSSVTHICRDVNYGWLIRYLH 83
Cdd:MTH00016   5 MRKTHPLIKIMNGSLVDLPAPSNLSIWWNFGSLLGLCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLLRNLH 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25814902   84 ANGASMFFICLFLHVGRGVYYGSFTFMETWNIGVILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEW 163
Cdd:MTH00016  85 ANGASFFFICLYLHIGRGIYYGSYFLMETWNIGVILLLLTMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGKMLVQW 164

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25814902  164 IWGGFSVDKATLTRFFAFHFILPFVIAALVIVHLLFLHETGSNNPTGLDSDSDKIPFHPYYTIKDILGVIMMILFLMTLV 243
Cdd:MTH00016 165 LWGGFSVDNATLTRFFALHFLLPFVIAALSMIHLLFLHQTGSNNPLGVNSNSDKVPFHPYYTSKDIVGFIVMLFLLLSVV 244

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25814902  244 LFFPDLLGDPDNYMPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALFLSILVLMFLPFLHTSKQRSLMFRPITQT 323
Cdd:MTH00016 245 LLWPNILGDPENFIPANPLVTPTHIKPEWYFLWAYAILRSIPNKLGGVVAMFASILILFFLPFIFKQKFRGLSFYPLNQI 324

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 25814902  324 LYWILVANLFILTWIGGQPVDHPFIIIGQLASISYFSIILIlMPISGMIENSMLK 378
Cdd:MTH00016 325 LFWLLVSNFLLLTWIGGRPVEPPYEFLGQIFTVFYFFYFMI-NPLLMKLWDKLLK 378
CYTB MTH00022
cytochrome b; Validated
 4-378 0e+00

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 529.27  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25814902    4 IRKTHPLLKIINHSFIDLPAPSNISSWWNFGSLLGICLMIQIATGLFLAMHYTSDTSTAFSSVTHICRDVNYGWLIRYLH 83
Cdd:MTH00022   3 LRKENPLLSIVNGFLVDLPSPSNISYLWNFGSLLGLCLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYLH 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25814902   84 ANGASMFFICLFLHVGRGVYYGSFTFMETWNIGVILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEW 163
Cdd:MTH00022  83 ANGASLFFLCLYIHIGRGLYYGGYLKFHVWNVGVVIFLLTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTDIVQW 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25814902  164 IWGGFSVDKATLTRFFAFHFILPFVIAALVIVHLLFLHETGSNNPTGLDSDSDKIPFHPYYTIKDILGVIMMILFLMTLV 243
Cdd:MTH00022 163 VWGGFSVSNATLNRFFSLHFLFPFILAFLVIVHLIYLHVDGSNNPIGLNSSVDKVSFHVYYTSKDWYGIVVLFFLLSFIV 242

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25814902  244 LFFPDLLGDPDNYMPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALFLSILVLMFLPFLHTSKQRSLMFRPITQT 323
Cdd:MTH00022 243 YFAPNLLGDPENFIQANSLVTPVHIQPEWYFLFAYAILRSIPNKLGGVVAMFFSILILFFLPLLHTSWLRGLTFRPLGRM 322

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 25814902  324 LYWILVANLFILTWIGGQPVDHPFIIIGQLASISYFSIILILMPISGMIENSMLK 378
Cdd:MTH00022 323 AFWFLIVDFILLTWIGSQVVEEPFILIGQLLSFFYFFYFLVLIPLLGELENQLLF 377
CYTB MTH00053
cytochrome b; Provisional
 4-378 0e+00

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 524.66  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25814902    4 IRKTHPLLKIINHSFIDLPAPSNISSWWNFGSLLGICLMIQIATGLFLAMHYTSDTSTAFSSVTHICRDVNYGWLIRYLH 83
Cdd:MTH00053   5 IRKENPVISLVNSMFIDLPSPSNISYLWNFGSLLGFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFILRYLH 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25814902   84 ANGASMFFICLFLHVGRGVYYGSFTFMETWNIGVILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEW 163
Cdd:MTH00053  85 ANGASMFFLCVYFHIGRGIYYGSYTKIIVWNVGVLIFLLMILTAFIGYVLPWGQMSFWAATVITNLLSAIPYVGDDIVRW 164

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25814902  164 IWGGFSVDKATLTRFFAFHFILPFVIAALVIVHLLFLHETGSNNPTGLDSDSDKIPFHPYYTIKDILGVIMMILFLMTLV 243
Cdd:MTH00053 165 VWGGFSVSNATLNRFYSLHYLLPFILAGLALVHLIALHEDGSNNPIGVRSDIDKIPFHYYYVLKDLYGAVILLIILSIIV 244

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25814902  244 LFFPDLLGDPDNYMPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALFLSILVLMFLPFLHTSKQRSLMFRPITQT 323
Cdd:MTH00053 245 FLFPYSLGDAENFKQANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVVALVFSILVLFFLPYLHKSRFRGLSFRPLSKI 324

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 25814902  324 LYWILVANLFILTWIGGQPVDHPFIIIGQLASISYFSIILILMPISGMIENSMLK 378
Cdd:MTH00053 325 LFWFLVGDFFLLTWIGGQPVEEPYILIGQIASIFYFAYFLILMPLAGYLENKLLK 379
CYTB MTH00224
cytochrome b; Provisional
 4-378 0e+00

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 514.86  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25814902    4 IRKTHPLLKIINHSFIDLPAPSNISSWWNFGSLLGICLMIQIATGLFLAMHYTSDTSTAFSSVTHICRDVNYGWLIRYLH 83
Cdd:MTH00224   5 FRTTHPAIKILNGSLIDLPAPNNISIWWNYGSLLGLCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLLRSIH 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25814902   84 ANGASMFFICLFLHVGRGVYYGSFTFMETWNIGVILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEW 163
Cdd:MTH00224  85 ANGASMFFLFIYLHVGRGLYYGSFNLSETWNIGVILFILTMATAFLGYVLPWGQMSFWGATVITNLFSAIPYIGKDLVEW 164

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25814902  164 IWGGFSVDKATLTRFFAFHFILPFVIAALVIVHLLFLHETGSNNPTGLDSDSDKIPFHPYYTIKDILGVIMMILFLMTLV 243
Cdd:MTH00224 165 IWGGFAVDNATLNRFFSFHFLLPFAIMGATILHIMFLHQTGSNNPIGINADSARIPFHPYYSIKDALGYLIAILLLSLMV 244

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25814902  244 LFFPDLLGDPDNYMPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALFLSILVLMFLPFLHTSKQRSLMFRPITQT 323
Cdd:MTH00224 245 LFEPNLFTDPENFLMANPLVTPIHIKPEWYFLWMYAILRSIPNKLGGVVALFAAILILFILPLTSVMNKRSLPFYPLNQL 324

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 25814902  324 LYWILVANLFILTWIGGQPVDHPFIIIGQLASISYFSiILILMPISGMIENSMLK 378
Cdd:MTH00224 325 LFWLLVTSWAILTWIGGRPVEDPFEGIGQVFTILYFS-YFIISPAISKLWDDLLN 378
CYTB MTH00033
cytochrome b; Provisional
 19-380 1.30e-142

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 410.10  E-value: 1.30e-142
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25814902   19 IDLPAPSNISSWWNFGSLLGICLMIQIATGLFLAMHYTSDTSTAFSSVTHICRDVNYGWLIRYLHANGASMFFICLFLHV 98
Cdd:MTH00033  16 IDLPTPSNISYWWNFGSLLCLCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASLFFICVYCHI 95

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25814902   99 GRGVYYGSFTFMETWNIGVILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRF 178
Cdd:MTH00033  96 GRGLYYGGYSRVLTWIVGVLIFFIMMLTAFIGYVLPWGQMSFWAATVITNLVSAIPSVGGSIVEWIWGGFSVSNCTLNRF 175

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25814902  179 FAFHFILPFVIAALVIVHLLFLHETGSNNPTGLDSDSDKIPFHPYYTIKDILGVIMMILFLMTLVL--FFPDLLGDPDNY 256
Cdd:MTH00033 176 FSLHYLLPFVLVGLVLAHLLTLHEKGSNEPLGLVGLSDRTAFHVYFTIKDILGFLILFGVFVIIGIepRIETLLQDPENF 255

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25814902  257 MPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALFLSILVLMFLPFLHTSKQRSLMFRPITQTLYWILVANLFILT 336
Cdd:MTH00033 256 IQANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVLALFASILVLLLMPILDRSKIRSLTFNPTGKFFFWFIVGDFIILT 335

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|....*
gi 25814902  337 WIGGQPVD-HPFIIIGQLASISYFSIILILMPISGMIENSMLKWN 380
Cdd:MTH00033 336 WIGSAPAGaDPYVLIGRIATIFYFGYFLVLVPLLGYLSNLFYEYN 380
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-373 3.25e-137

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 396.47  E-value: 3.25e-137
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25814902   1 MTNIRKTHPLLKIIN---------HSFIDLPAPSNISSWWNFGSLLGICLMIQIATGLFLAMHYTSDTSTAFSSVTHICR 71
Cdd:COG1290   1 MSTTKKASGLADWLDerlplaslvREHLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMR 80

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25814902  72 DVNYGWLIRYLHANGASMFFICLFLHVGRGVYYGSFTFME--TWNIGVILLFAVMATAFMGYVLPWGQMSFWGATVITNL 149
Cdd:COG1290  81 DVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGAYKKPRelNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGL 160

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25814902 150 LSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFH-FILPFVIAALVIVHLLFLHETGSNNPTGLDSDS----DKIPFHPYY 224
Cdd:COG1290 161 FGAIPVIGTWLVTWLFGGEFPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGPERKKtekvDGVPFHPYY 240

                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25814902 225 TIKDILGVIMMILFLMTLVLFFPDllGDPDNYMPANPLNTPPHIKPEWYFLFAYAILRSIP--NKLGGVLALFLSILVLM 302
Cdd:COG1290 241 TVKDGFGFFVFLGVFALLAFFFPI--NPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLF 318

                       330       340       350       360       370       380       390
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 25814902 303 FLPFLHTSKQRSLMFRPITQTLYWILVANLFILTWIGGQPVdhPFIIIGQLASISYFSIILILMPISGMIE 373
Cdd:COG1290 319 LLPFLDRSPVRSPRYRPVRTALGVAFIVFFIVLTILGANPP--IATLLGSINTVTYFAFFLIVLPILAFIE 387
CYTB MTH00086
cytochrome b; Provisional
 12-366 1.23e-122

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 358.10  E-value: 1.23e-122
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25814902   12 KIINHSFIDLPAPSNISSWWNFGSLLGICLMIQIATGLFLAMHYTSDTSTAFSSVTHICRDVNYGWLIRYLHANGASMFF 91
Cdd:MTH00086   1 NFVNSLVVTLPSSKSLSYWWNFGSMLGMVLVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25814902   92 ICLFLHVGRGVYYGSFTFMETWNIGVILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVD 171
Cdd:MTH00086  81 IFLYLHIFKGLFMMSYRLKKVWISGLTIYLLVMMEAFMGYVLVWAQMSFWAAVVITSLLSVIPIWGPSIVMWIWGGFGVS 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25814902  172 KATLTRFFAFHFILPFVIAALVIVHLLFLHETGSNNPTGLDSDSDKIPFHPYYTIKDILGVImMILFLMTLVLFFPDLLG 251
Cdd:MTH00086 161 SATLKFFFVLHFLLPWGLLVLVLFHLIFLHSTGSTSSLYCHGDYDKICFGPEYWNKDAYNII-FWLVFIIFSLFYPFNLG 239

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25814902  252 DPDNYMPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALFLSILVLMFLPFLHTSKQrslMFRPITQTLYWILVAN 331
Cdd:MTH00086 240 DPEMFIEADPMMSPVHIVPEWYFLFAYAILRAIPNKVLGVIALLMSIVVFYFFIFVNNYTS---CLNKLNKFLVFSFIVV 316

                        330       340       350
                 ....*....|....*....|....*....|....*
gi 25814902  332 LFILTWIGGQPVDHPFIIIGQLASISYFSIILILM 366
Cdd:MTH00086 317 NVILSWLGQCLVEYPFLFLSQIFSFIYFFLILLML 351
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 9-206 1.89e-94

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 280.79  E-value: 1.89e-94
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25814902   9 PLLKIINHSFIDLPAPSNISSWWNFGSLLGICLMIQIATGLFLAMHYTSDTSTAFSSVTHICRDVNYGWLIRYLHANGAS 88
Cdd:cd00284   1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25814902  89 MFFICLFLHVGRGVYYGSF--TFMETWNIGVILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWG 166
Cdd:cd00284  81 MFFLMLYLHIFRGLYYGSYkkPRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWG 160

                       170       180       190       200
                ....*....|....*....|....*....|....*....|
gi 25814902 167 GFSVDKATLTRFFAFHFILPFVIAALVIVHLLFLHETGSN 206
Cdd:cd00284 161 GFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
CYTB MTH00046
cytochrome b; Validated
 10-364 8.25e-94

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 284.57  E-value: 8.25e-94
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25814902   10 LLKIINHSFIDLPAPSNISSWWNFGSLLGICLMIQIATGLFLAMHYTSDTSTAFSSVTHICRDVNYGWLIRYLHANGASM 89
Cdd:MTH00046   1 MISLIRRNLIDLPTNYSLNYYWCSGFVLSVFMVIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNV 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25814902   90 FFICLFLHVGRGVYYGSFTFMETWNIGVILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFS 169
Cdd:MTH00046  81 LFILLFIHMGRALYYSSYSKKGVWNVGFILYLLVMVEAFLGYILPWHQMSYWAATVLTSIVDSVPIVGSLVYKYIVGGFS 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25814902  170 VDKATLTRFFAFHFILPFVIAALVIVHLLFLHETGSNNPTGL-DSDSDKIPFHPYYTIKDILGVIMMILFLMTLVLFFPD 248
Cdd:MTH00046 161 VTGVTLVRVFSVHICLGFVILGLMVVHLFYLHKSGSSNPLFSsNGYSDVVYFHSYFTVKDLFLFMVVCSLLVFWLFVSPD 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25814902  249 LLGDPDNYMPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGvLALFLSILVLMFLPflhtSKQRSLMFRPITQTLYWIL 328
Cdd:MTH00046 241 LVLDIEAYLEADPLVTPVSIKPEWYFLAFYAMLRSINSKIGG-LVLVLSFLFFLWVP----TFNGSSVYSVWRQVNFWLI 315

                        330       340       350
                 ....*....|....*....|....*....|....*.
gi 25814902  329 VANLFILTWIGGQPVDHPFIIIGQLASISYFSIILI 364
Cdd:MTH00046 316 VSLFFSLSYLGGCHPEYPYLLISQLFSVLMVLLLFI 351
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
18-204 3.90e-85

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 256.54  E-value: 3.90e-85
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25814902    18 FIDLPAPSNISSWWNFGSLLGICLMIQIATGLFLAMHYTSDTSTAFSSVTHICRDVNYGWLIRYLHANGASMFFICLFLH 97
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25814902    98 VGRGVYYGSF--TFMETWNIGVILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATL 175
Cdd:pfam00033  81 IFRGLYYGGFsyPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160

                         170       180
                  ....*....|....*....|....*....
gi 25814902   176 TRFFAFHFILPFVIAALVIVHLLFLHETG 204
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 207-354 3.39e-56

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 180.92  E-value: 3.39e-56
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25814902 207 NPTGLDSDSDKIPFHPYYTIKDILGVIMMILFLMTLVLFFPDLLGDPDNYMPANPLNTPPHIKPEWYFLFAYAILRSIPN 286
Cdd:cd00290   1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80

                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 25814902 287 KLGGVLALFLSILVLMFLPFLHTSKQRSlMFRPITQTLYWILVANLFILTWIGGQPVDHPFIIIGQLA 354
Cdd:cd00290  81 KLLGVLAMAASILSLFLVPFLENSNKRS-QFRPLRPTAFWVFLAGTLVLGWLGIQPVEYPFSLILQLF 147
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
258-358 2.86e-48

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 158.80  E-value: 2.86e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25814902   258 PANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALFLSILVLMFLPFLHTSKQRSLMFRPITQTLYWILVANLFILTW 337
Cdd:pfam00032   1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLFKIFFWLFVVDFVVLGW 80

                          90       100
                  ....*....|....*....|.
gi 25814902   338 IGGQPVDHPFIIIGQLASISY 358
Cdd:pfam00032  81 LGKQPPTGPYTLLGQIATVYY 101
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
88-253 2.64e-46

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 155.86  E-value: 2.64e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25814902    88 SMFFICLFLHVGRGVYYGSFTFME--TWNIGVILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIW 165
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWLLF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25814902   166 GGFSVDKATLTRFFAFHF-ILPFVIAALVIVHLLFLHETGSNNPTGLDSDSDKIPFHPYYTIKDILGVIMMILFLMTLVL 244
Cdd:pfam13631  81 GGPFPGTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKMLLFFLITVALLIGLAQ 160


                  ....*....
gi 25814902   245 FFPDLLGDP 253
Cdd:pfam13631 161 INPIWLGGP 169
PRK03735 PRK03735
cytochrome b6; Provisional
 33-208 8.12e-41

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 143.70  E-value: 8.12e-41
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25814902   33 FGSLLGICLMIQIATGLFLAMHYTSDTSTAFSSVTHICRDVNYGWLIRYLHANGASMFFICLFLHVGRGVYYGSFTFME- 111
Cdd:PRK03735  44 FGGLTFFCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKPRe 123

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25814902  112 -TWNIGVILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFH-FILPFVI 189
Cdd:PRK03735 124 lNWVVGVLIFFVTVGLGFTGYLLPWDQKAYFATKVGSQIAEAIPVIGDFIKTLLRGGEIVGAQTLTRFFAIHvFFLPWAL 203

                        170
                 ....*....|....*....
gi 25814902  190 AALVIVHLLFLHETGSNNP 208
Cdd:PRK03735 204 AVLMLAHFLMIRKQGISGP 222
petB CHL00070
cytochrome b6
 24-208 8.47e-37

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 132.54  E-value: 8.47e-37
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25814902   24 PSNISSWWNFGSLLGICLMIQIATGLFLAMHYTSDTSTAFSSVTHICRDVNYGWLIRYLHANGASMFFICLFLHVGRGVY 103
Cdd:CHL00070  27 PPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYL 106

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25814902  104 YGSFTFME--TWNIGVILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAF 181
Cdd:CHL00070 107 TGGFKKPRelTWVTGVVLAVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSVSVGQSTLTRFYSL 186

                        170       180
                 ....*....|....*....|....*...
gi 25814902  182 H-FILPFVIAALVIVHLLFLHETGSNNP 208
Cdd:CHL00070 187 HtFVLPLLTAVFMLMHFLMIRKQGISGP 214
petD CHL00058
cytochrome b6/f complex subunit IV
 229-327 4.42e-11

cytochrome b6/f complex subunit IV


Pssm-ID: 176998  Cd Length: 160  Bit Score: 60.79  E-value: 4.42e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25814902  229 ILGVIMMILFLMTLVlffPDLLGDPdnympANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALFLSILVLMFLPFLH 308
Cdd:CHL00058  44 ILGTIACNVGLAVLE---PSMIGEP-----ADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMASVPAGLLTVPFLE 115

                         90       100
                 ....*....|....*....|
gi 25814902  309 TSKQRSLMF-RPITQTLYWI 327
Cdd:CHL00058 116 NVNKFQNPFrRPVATTVFLI 135
PetD COG5679
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion]; ...
 232-339 5.33e-11

Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion];


Pssm-ID: 444393 [Multi-domain]  Cd Length: 161  Bit Score: 60.58  E-value: 5.33e-11
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25814902 232 VIMMILFLMT-LVLFFPDLLGDPdnympANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALFLSILVLMFLPFLHT- 309
Cdd:COG5679  44 VILGTIALCIgLAVLDPAMMGEP-----ADPFATPLEILPEWYLYPVFQILRVVPNKLLGIVMMAAIPLGLMLVPFIENv 118

                        90       100       110
                ....*....|....*....|....*....|
gi 25814902 310 SKQRSLMFRPITQTLYwiLVANLFILtWIG 339
Cdd:COG5679 119 NKFQNPFRRPVATAVF--LFGTLVTL-WLG 145
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 229-339 1.06e-09

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 56.73  E-value: 1.06e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25814902   229 ILGVIMMILFLMTLVlffPDLLGDPdnympANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALFLSILVLMFLPFLH 308
Cdd:TIGR01156  44 ILGTIACVVGLAVLD---PAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIE 115

                          90       100       110
                  ....*....|....*....|....*....|..
gi 25814902   309 T-SKQRSLMFRPITQTLYwiLVANLFILtWIG 339
Cdd:TIGR01156 116 NvNKFQNPFRRPVATTVF--LFGTVVAL-WLG 144
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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