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Conserved domains on  [gi|257786502|gb|ACV66964|]
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NADH dehydrogenase subunit 2 (mitochondrion) [Brotogeris jugularis]

Protein Classification

NADH dehydrogenase subunit 2( domain architecture ID 11475904)

NADH dehydrogenase subunit 2 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), which functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
1-326 2.14e-161

NADH dehydrogenase subunit 2; Provisional


:

Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 454.67  E-value: 2.14e-161
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786502   1 MTPLAKLISIVSILLGTTITITSNHWMTAWAGLEINTLSILPLISKSHHPRAVEAATKYFLVQATASALVLFSSTINAHS 80
Cdd:MTH00112   1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786502  81 TGQWDITQLTHPVACLLLTSAIAIKLGLTPFHFWFPEVLQGSPLITALLLSTMMKLPPTTILLITSHSLNPSLLTLMAIM 160
Cdd:MTH00112  81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786502 161 SIALGGWMGLNQTQTRKIMAFSSISHLGWMIIIITYNPKLTLLAFYVYILMTASIFLTMNKINALKLPTLMTSWTKTPAL 240
Cdd:MTH00112 161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786502 241 NTALMLTLLSLAGLPPLTGFLPKWLIIQELVKQEMTAATTIISMLSLLGLFFYLRLAYCSTITLPPNPPNKMKQWPPKTS 320
Cdd:MTH00112 241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                 ....*.
gi 257786502 321 TNTLIP 326
Cdd:MTH00112 321 KNTLTA 326
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
1-326 2.14e-161

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 454.67  E-value: 2.14e-161
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786502   1 MTPLAKLISIVSILLGTTITITSNHWMTAWAGLEINTLSILPLISKSHHPRAVEAATKYFLVQATASALVLFSSTINAHS 80
Cdd:MTH00112   1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786502  81 TGQWDITQLTHPVACLLLTSAIAIKLGLTPFHFWFPEVLQGSPLITALLLSTMMKLPPTTILLITSHSLNPSLLTLMAIM 160
Cdd:MTH00112  81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786502 161 SIALGGWMGLNQTQTRKIMAFSSISHLGWMIIIITYNPKLTLLAFYVYILMTASIFLTMNKINALKLPTLMTSWTKTPAL 240
Cdd:MTH00112 161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786502 241 NTALMLTLLSLAGLPPLTGFLPKWLIIQELVKQEMTAATTIISMLSLLGLFFYLRLAYCSTITLPPNPPNKMKQWPPKTS 320
Cdd:MTH00112 241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                 ....*.
gi 257786502 321 TNTLIP 326
Cdd:MTH00112 321 KNTLTA 326
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
10-298 1.40e-36

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 137.17  E-value: 1.40e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786502  10 IVSILLGTTITITSNHWMTAWAGLEINTLSILPLIS-KSHHPRAVEAATKYFLVQATASALVLFSSTINAHSTGQWDITQ 88
Cdd:COG1007  108 LLFATLGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYGISLLYGATGSLNLAG 187
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786502  89 LTHPV------------ACLLLTSAIAIKLGLTPFHFWFPEVLQGSPLITALLLSTMMKL----PPTTILLITSHSLNPS 152
Cdd:COG1007  188 IAAALaagganspllllGLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIaafaALLRLLVEAFPGLAAD 267
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786502 153 ---LLTLMAIMSIALGGWMGLNQTQTRKIMAFSSISHLGWMII-IITYNPK-LTLLAFY--VYILMTASIFLTMNKI-NA 224
Cdd:COG1007  268 wqlLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLgLAAGTPLgVSAALFYllAYLFMNLGAFAVILLLsRK 347
                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 257786502 225 LKLPTLMTSW----TKTPALNTALMLTLLSLAGLPPLTGFLPKWLIIQELVKQEMTAATTIISMLSLLGLFFYLRLAY 298
Cdd:COG1007  348 GGEAEEIEDLaglaRRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLRVVK 425
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
23-271 5.66e-29

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 113.18  E-value: 5.66e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786502   23 SNHWMTAWAGLEINTLSILPLI-SKSHHPRAVEAATKYFLVQATASALVLFSSTINAHSTGQWDITQL-----------T 90
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELskaltgglnssG 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786502   91 HPVACLLLTSAIAIKLGLTPFHFWFPEVLQGSPL-ITALLLSTMMKLPPttILLITSHSLNPS-------LLTLMAIMSI 162
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTpVSALLAATLVKAGG--YGLIRRSLLYLPsspfiqqILLILAIISM 158
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786502  163 ALGGWMGLNQTQTRKIMAFSSISHLGWMIIII----TYNPKLTLLAFYVYILMTASIFLTMNKINALKLPT-----LMTS 233
Cdd:pfam00361 159 LLGSLAALVQTDIKRLLAYSSISHMGYMLIALgagtIYGIQAAIFHLLTHGLFSAGLFLCAGSVIYRRVHTrnirdYGGL 238
                         250       260       270
                  ....*....|....*....|....*....|....*...
gi 257786502  234 WTKTPALNTALMLTLLSLAGLPPLTGFLPKWLIIQELV 271
Cdd:pfam00361 239 AKTMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAV 276
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
13-297 3.03e-28

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 114.27  E-value: 3.03e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786502   13 ILLGTTITITSNHWMTAWAGLEINTLSILPLIS-KSHHPRAVEAATKYFLVQATASALVLFSSTINAHSTGQWDITQLTH 91
Cdd:TIGR01770 111 ALLGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLL 190
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786502   92 PV------------ACLLLTSAIAIKLGLTPFHFWFPEVLQGSPLITALLLSTMMKLPPTTILL-------ITSHSLNPS 152
Cdd:TIGR01770 191 FLsngmlnisllllGIVLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFLrlflyilFGFSEAWQI 270
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786502  153 LLTLMAIMSIALGGWMGLNQTQTRKIMAFSSISHLGWMIIIITYNPKLTLLA--FY--VYILMTASIFLTMNKINALKLP 228
Cdd:TIGR01770 271 FLAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIKAvlFYifIYALMSLGAFGVLSLLRSYKDE 350
                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 257786502  229 -----TLMTSWTKT-PALNTALMLTLLSLAGLPPLTGFLPKWLIIQELVKQEMTAATTIISMLSLLGLFFYLRLA 297
Cdd:TIGR01770 351 wieyiSDFAGLFKTnPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRVV 425
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
1-326 2.14e-161

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 454.67  E-value: 2.14e-161
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786502   1 MTPLAKLISIVSILLGTTITITSNHWMTAWAGLEINTLSILPLISKSHHPRAVEAATKYFLVQATASALVLFSSTINAHS 80
Cdd:MTH00112   1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786502  81 TGQWDITQLTHPVACLLLTSAIAIKLGLTPFHFWFPEVLQGSPLITALLLSTMMKLPPTTILLITSHSLNPSLLTLMAIM 160
Cdd:MTH00112  81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786502 161 SIALGGWMGLNQTQTRKIMAFSSISHLGWMIIIITYNPKLTLLAFYVYILMTASIFLTMNKINALKLPTLMTSWTKTPAL 240
Cdd:MTH00112 161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786502 241 NTALMLTLLSLAGLPPLTGFLPKWLIIQELVKQEMTAATTIISMLSLLGLFFYLRLAYCSTITLPPNPPNKMKQWPPKTS 320
Cdd:MTH00112 241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                 ....*.
gi 257786502 321 TNTLIP 326
Cdd:MTH00112 321 KNTLTA 326
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
1-324 1.79e-132

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 381.46  E-value: 1.79e-132
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786502   1 MTPLAKLISIVSILLGTTITITSNHWMTAWAGLEINTLSILPLISKSHHPRAVEAATKYFLVQATASALVLFSSTINAHS 80
Cdd:MTH00135   1 MNPYVLTILLFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWL 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786502  81 TGQWDITQLTHPVACLLLTSAIAIKLGLTPFHFWFPEVLQGSPLITALLLSTMMKLPPTtILLITSHSLNPSLLTLMAIM 160
Cdd:MTH00135  81 TGQWDIQQMSHPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPF-ALILQIAPTNPTLLITLGLT 159
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786502 161 SIALGGWMGLNQTQTRKIMAFSSISHLGWMIIIITYNPKLTLLAFYVYILMTASIFLTMNKINALKLPTLMTSWTKTPAL 240
Cdd:MTH00135 160 STLVGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPAL 239
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786502 241 NTALMLTLLSLAGLPPLTGFLPKWLIIQELVKQEMTAATTIISMLSLLGLFFYLRLAYCSTITLPPNPPNKMKQWPPKTS 320
Cdd:MTH00135 240 TALTPLILLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPWRLPST 319

                 ....
gi 257786502 321 TNTL 324
Cdd:MTH00135 320 QLTL 323
ND2 MTH00070
NADH dehydrogenase subunit 2; Provisional
1-327 3.79e-130

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 375.41  E-value: 3.79e-130
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786502   1 MTPLAKLISIVSILLGTTITITSNHWMTAWAGLEINTLSILPLISKSHHPRAVEAATKYFLVQATASALVLFSSTINAHS 80
Cdd:MTH00070   1 MSPYALSILLSSLALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWF 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786502  81 TGQWDITQLTHPVACLLLTSAIAIKLGLTPFHFWFPEVLQGSPLITALLLSTMMKLPPTTILLITSHSLNPSLLTLMAIM 160
Cdd:MTH00070  81 TGEWTIMNMQTPLPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQISHLLNSNLLIIMGLL 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786502 161 SIALGGWMGLNQTQTRKIMAFSSISHLGWMIIIITYNPKLTLLAFYVYILMTASIFLTMNKINALKLPTLMTSWTKTPAL 240
Cdd:MTH00070 161 STLIGGWGGLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTL 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786502 241 NTALMLTLLSLAGLPPLTGFLPKWLIIQELVKQEMTAATTIISMLSLLGLFFYLRLAYCSTITLPPNPPNKMKQWPPKTS 320
Cdd:MTH00070 241 TSMMMLTLLSLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYAMSLTTSPNTSNSKLYWRFKNK 320

                 ....*..
gi 257786502 321 TNTLIPV 327
Cdd:MTH00070 321 TNNLLSL 327
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
1-326 1.34e-116

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 341.06  E-value: 1.34e-116
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786502   1 MTPLAKLISIVSILLGTTITITSNHWMTAWAGLEINTLSILPLISKSHHPRAVEAATKYFLVQATASALVLFSSTINAHS 80
Cdd:MTH00105   1 MNPLILIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMY 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786502  81 TGQWDITQLTHPVACLLLTSAIAIKLGLTPFHFWFPEVLQGSPLITALLLSTMMKLPPTTILLITSHSLNPSLLTLMAIM 160
Cdd:MTH00105  81 SGQWTITKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAIL 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786502 161 SIALGGWMGLNQTQTRKIMAFSSISHLGWMIIIITYNPKLTLLAFYVYILMTASIFLTMNKINALKLPTLMTSWTKTPAL 240
Cdd:MTH00105 161 SILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLM 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786502 241 NTALMLTLLSLAGLPPLTGFLPKWLIIQELVKQEMTAATTIISMLSLLGLFFYLRLAYCSTITLPPNPPN-KMKQWPPKT 319
Cdd:MTH00105 241 TSLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFPSTNNmKMKWQFENT 320

                 ....*..
gi 257786502 320 STNTLIP 326
Cdd:MTH00105 321 KPMTLLP 327
ND2 MTH00200
NADH dehydrogenase subunit 2; Provisional
1-327 1.37e-96

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177246 [Multi-domain]  Cd Length: 347  Bit Score: 290.33  E-value: 1.37e-96
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786502   1 MTPLAKLISIVSILLGTTITITSNHWMTAWAGLEINTLSILPLISKSHHPRAVEAATKYFLVQATASALVLFSSTINAHS 80
Cdd:MTH00200   1 MSPLILPLFILSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWT 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786502  81 TGQWDITQLTHPVACLLLTSAIAIKLGLTPFHFWFPEVLQGSPLITALLLSTMMKLPPTTILLITSHSLNPSLLTLMAIM 160
Cdd:MTH00200  81 SGQWGISEMLGPLSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLAPALNSNILLLLGLL 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786502 161 SIALGGWMGLNQTQTRKIMAFSSISHLGWMIIIITYNPKLTLLAFYVYILMTASIFLTMNKINALKLPTLMTSWTKTPAL 240
Cdd:MTH00200 161 SVLVGGWGGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPIL 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786502 241 NTALMLTLLSLAGLPPLTGFLPKWLIIQELVKQEMTAATTIISMLSLLGLFFYLRLAYCSTITLPPNPPNKMKQWPPKTS 320
Cdd:MTH00200 241 SMLLGLTLLSLGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLTLLTLSPNQINMMSSWRTKSN 320

                 ....*..
gi 257786502 321 TNTLIPV 327
Cdd:MTH00200 321 SNLLVGL 327
ND2 MTH00041
NADH dehydrogenase subunit 2; Validated
7-307 1.98e-89

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 177116 [Multi-domain]  Cd Length: 349  Bit Score: 271.80  E-value: 1.98e-89
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786502   7 LISIVSILLGTTITITSNHWMTAWAGLEINTLSILPLISKSHHPRAVEAATKYFLVQATASALVLFSSTINAHSTGQWDI 86
Cdd:MTH00041   7 IFLITSIILGTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWLSGSWSI 86
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786502  87 TQLTHPVACLLLTSAIAIKLGLTPFHFWFPEVLQGSPLITALLLSTMMKLPPTTILLITSHSLNPSLLTLMAIMSIALGG 166
Cdd:MTH00041  87 NGPLNTLSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNLLNSNILILCGILSVLVGG 166
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786502 167 WMGLNQTQTRKIMAFSSISHLGWMIIIITYNPKLTLLAFYVYILMTASIFLTMNKINALKLPTLMTSWTKTPALNTALML 246
Cdd:MTH00041 167 WGGLNQTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPISAFLFIL 246
                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 257786502 247 TLLSLAGLPPLTGFLPKWLIIQELVKQEMTAATTIISMLSLLGLFFYLRLAYCSTITLPPN 307
Cdd:MTH00041 247 SILSLGGLPPLTGFLNKFISLYCLIQNNSILISIILIIGSLLSLFFYLRISFNTSLTLFPQ 307
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
1-325 2.94e-63

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 204.29  E-value: 2.94e-63
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786502   1 MTPLAKLISIVSILLGTTITITSNHWMTAWAGLEINTLSILPLISKSHHPRAVEAATKYFLVQATASALVLFSSTINAHS 80
Cdd:MTH00160   2 MMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNMLN 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786502  81 TGqwditqLTHPVACLLLTSAIAIKLGLTPFHFWFPEVLQGSPLITALLLSTMMKLPPTTILlitSHSLNPSLLTLMAIM 160
Cdd:MTH00160  82 LM------LFNNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILL---SYLINNNFIIIIIIL 152
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786502 161 SIALGGWMGLNQTQTRKIMAFSSISHLGWMIIIITYNPKLTLLAFYVYILMTASIFLTMNKINALKLPTLMTSWTKTPAL 240
Cdd:MTH00160 153 SAIIGAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKI 232
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786502 241 NTALMLTLLSLAGLPPLTGFLPKWLIIQELVKQEMTAATTIISMLSLLGLFFYLRLAYCSTITLPPNPPNKMKQWPPKTS 320
Cdd:MTH00160 233 KFLLFLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLMLNYNKNKWNLKKKKNKFS 312

                 ....*
gi 257786502 321 TNTLI 325
Cdd:MTH00160 313 LILNF 317
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
1-302 8.96e-54

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 179.70  E-value: 8.96e-54
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786502   1 MTPLAKLISIVSILLGTTITITSNHWMTAWAGLEINTLSILPLISKSHHPRAVEAATKYFLVQATASALVLFSSTINAHS 80
Cdd:MTH00144   1 MSSPSNLLFLFLMVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNL 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786502  81 TGQWDITqlthpvacLLLTSAIAIKLGLTPFHFWFPEVLQGSPLITALLLSTMMKLPPT-TILLITSHSLNPSLLTLMAI 159
Cdd:MTH00144  81 SFSWFSM--------SLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLfLLSNFLDLYWLAYLLCVISV 152
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786502 160 MSIALGGWMGLNQTQTRKIMAFSSISHLGWMIIIITYNPKLTLLAFYVYILMTASIFLTMNKINaLKLPTLMTSWTKTPA 239
Cdd:MTH00144 153 LSALVGSIGGLNQTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSLWSGD-SGSMKDLGSLKPSYK 231
                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 257786502 240 LNTALMLTLLSLAGLPPLTGFLPKWLIIQELVKQEMTAATTIISMLSLLGLFFYLRLAYCSTI 302
Cdd:MTH00144 232 TGLSIISLLLSLGGLPPFLGFCSKLLVLISSMESSPLLLILLLLLGSLISLFFYLSVFFSSFL 294
ND2 MTH00011
NADH dehydrogenase subunit 2; Validated
12-319 4.00e-51

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 164587 [Multi-domain]  Cd Length: 330  Bit Score: 172.66  E-value: 4.00e-51
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786502  12 SILLGTTITITSNHWMTAWAGLEINTLSILPLISKSHHPRAVEAATKYFLVQATASALVLFSSTInahstgQWDITQLTH 91
Cdd:MTH00011  14 TMTLGTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLGMTM------MWSFPSLLK 87
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786502  92 PVACLLLTSAIAIKLGLTPFHFWFPEVLQGSPLITALLLSTMMKLPPTTILLITSHSLNPSLLTLMAIMSIALGGWMGLN 171
Cdd:MTH00011  88 NITALMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNILPMMTSMAAMSALAGGLGGMN 167
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786502 172 QTQTRKIMAFSSISHLGWMIIIITYNPKLTLLAFYVYILMTASIFLTMNKINALKLPTLMTSWTKTPALNTALMLTLLSL 251
Cdd:MTH00011 168 QTQLRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTTSMSLFIMLLSL 247
                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 257786502 252 AGLPPLTGFLPKWLIIQELVKQEMTAATTIISMLSLLGLFFYLRLAYCSTITLPPNPPNKMKQWPPKT 319
Cdd:MTH00011 248 GGLPPFTGFMPKLMAIETLTSNSMILILLVLIVGSLMNLFYYLNLIFNFMYLSPTFSSLKSAPYEPKT 315
ND2 MTH00197
NADH dehydrogenase subunit 2; Provisional
12-302 2.31e-44

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177244 [Multi-domain]  Cd Length: 323  Bit Score: 154.83  E-value: 2.31e-44
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786502  12 SILLGTTITITSNHWMTAWAGLEINTLSILPLISKSHHPRAVEAATKYFLVQATASALVLFSStinahSTGQWDItqLTH 91
Cdd:MTH00197   6 IIFGGVLFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMGG-----SLSFSNL--YLS 78
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786502  92 PVACLLLTSAIAIKLGLTPFHFWFPEVLQGSPLITALLLSTMMKLPPTTILLITSHslNPSLLTLMAIMSIALGGWMGLN 171
Cdd:MTH00197  79 LLSVVLVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAPLLILAFNSS--SFMGLLICSVLSSLIGGIGGMN 156
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786502 172 QTQTRKIMAFSSISHLGWMIIIITYNPKLTLLAFYVYILMTASIFLTMNKINALKLPTLMTSWTKTPALNTALMLTLLSL 251
Cdd:MTH00197 157 QSNIRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQQYSNPESMSSNLVFLGLSFLSL 236
                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|.
gi 257786502 252 AGLPPLTGFLPKWLIIQELVKQEMTAATTIISMLSLLGLFFYLRLAYCSTI 302
Cdd:MTH00197 237 GGLPPLSGFFLKWLILTSLLSSNISLITFMLILSTCFSLYYYLSLAYKSLI 287
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
10-298 1.40e-36

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 137.17  E-value: 1.40e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786502  10 IVSILLGTTITITSNHWMTAWAGLEINTLSILPLIS-KSHHPRAVEAATKYFLVQATASALVLFSSTINAHSTGQWDITQ 88
Cdd:COG1007  108 LLFATLGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYGISLLYGATGSLNLAG 187
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786502  89 LTHPV------------ACLLLTSAIAIKLGLTPFHFWFPEVLQGSPLITALLLSTMMKL----PPTTILLITSHSLNPS 152
Cdd:COG1007  188 IAAALaagganspllllGLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIaafaALLRLLVEAFPGLAAD 267
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786502 153 ---LLTLMAIMSIALGGWMGLNQTQTRKIMAFSSISHLGWMII-IITYNPK-LTLLAFY--VYILMTASIFLTMNKI-NA 224
Cdd:COG1007  268 wqlLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLgLAAGTPLgVSAALFYllAYLFMNLGAFAVILLLsRK 347
                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 257786502 225 LKLPTLMTSW----TKTPALNTALMLTLLSLAGLPPLTGFLPKWLIIQELVKQEMTAATTIISMLSLLGLFFYLRLAY 298
Cdd:COG1007  348 GGEAEEIEDLaglaRRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLRVVK 425
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
13-296 1.55e-34

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 129.77  E-value: 1.55e-34
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786502  13 ILLGTTITITSNHWMTAWAGLEINTLSILPLI-SKSHHPRAVEAATKYFLVQATASALVLFSSTINAHSTGQWDI----- 86
Cdd:MTH00196   2 VALGILCLISSSNWLSVYLAIELQTLSLFILIaQNRGSGYSAEAGLKYFVLGALSSGLFLFGCALLCGTTGGLHLsyinl 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786502  87 --------TQLTHPVACLLLTSAIAIKLGLTPFHFWFPEVLQGSPLITALLLSTMMKLPPTTILLitSHSLNPSLLTLMA 158
Cdd:MTH00196  82 vlnsgqsfSSVSVPIGYLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSILV--SIGLNVNILLIGG 159
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786502 159 IMSIALGGWMGLNQTQTRKIMAFSSISHLGWMIIIITYNP----KLTLLAFYVYILMTASIFLTMNKINALK--LPTLMT 232
Cdd:MTH00196 160 LFSLFVGAIGALNQTKIKRLLAYSGIGHMGFVLWGIEIGSfesiQASLVYLFIYIIMSICVFSIILALNVYKnlIIEFSG 239
                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 257786502 233 SWTKTPALNTALMLTLLSLAGLPPLTGFLPKWLIIQELVKQEMTAATTIISMLSLLGLFFYLRL 296
Cdd:MTH00196 240 LSRRLPILAITLALTFLSIAGIPPLVGFLGKWLILLSGVVYQYYLIFLLAVFCSVIAGVYYVRI 303
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
14-296 2.90e-31

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 122.62  E-value: 2.90e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786502  14 LLGTTITITSNHWMTAWAGLEINTLSILPLIS-KSHHPRAVEAATKYFLVQATASALVLFSSTINAHSTGQWDITQLTHP 92
Cdd:PRK05777 113 LLGMMVMVSANDLLTLFLGLELLSLPLYALAAlRRDRRRSLEAAIKYFVLGALASGFLLYGMSLLYGATGSLSFAGIAKA 192
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786502  93 VA------------CLLLTSAIAIKLGLTPFHFWFPEVLQGSPLITALLLSTMMKL----PPTTILLITSHSLNPS---L 153
Cdd:PRK05777 193 LAdgsgnsllllfgLVFLLVGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIaafaVLLRLLVVAFGGLSEDwqqV 272
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786502 154 LTLMAIMSIALGGWMGLNQTQTRKIMAFSSISHLGWM---IIIITYNPkLTLLAFY--VYILMTASIFLTmnkINALKLP 228
Cdd:PRK05777 273 LAIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLlvgLAAGTAEG-YSAVLFYllAYLFMTLGAFGV---ISLLRRK 348
                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 257786502 229 ----TLMTSWT----KTPALNTALMLTLLSLAGLPPLTGFLPKWLIIQELVKQEMTAATTIISMLSLLGLFFYLRL 296
Cdd:PRK05777 349 ggeaESISDFAglskRSPLLAAVMTIFMLSLAGIPPTAGFWGKFYVFEAAVEAGLWWLAVIGVLNSAIGAFYYLRV 424
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
23-271 5.66e-29

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 113.18  E-value: 5.66e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786502   23 SNHWMTAWAGLEINTLSILPLI-SKSHHPRAVEAATKYFLVQATASALVLFSSTINAHSTGQWDITQL-----------T 90
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELskaltgglnssG 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786502   91 HPVACLLLTSAIAIKLGLTPFHFWFPEVLQGSPL-ITALLLSTMMKLPPttILLITSHSLNPS-------LLTLMAIMSI 162
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTpVSALLAATLVKAGG--YGLIRRSLLYLPsspfiqqILLILAIISM 158
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786502  163 ALGGWMGLNQTQTRKIMAFSSISHLGWMIIII----TYNPKLTLLAFYVYILMTASIFLTMNKINALKLPT-----LMTS 233
Cdd:pfam00361 159 LLGSLAALVQTDIKRLLAYSSISHMGYMLIALgagtIYGIQAAIFHLLTHGLFSAGLFLCAGSVIYRRVHTrnirdYGGL 238
                         250       260       270
                  ....*....|....*....|....*....|....*...
gi 257786502  234 WTKTPALNTALMLTLLSLAGLPPLTGFLPKWLIIQELV 271
Cdd:pfam00361 239 AKTMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAV 276
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
13-297 3.03e-28

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 114.27  E-value: 3.03e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786502   13 ILLGTTITITSNHWMTAWAGLEINTLSILPLIS-KSHHPRAVEAATKYFLVQATASALVLFSSTINAHSTGQWDITQLTH 91
Cdd:TIGR01770 111 ALLGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLL 190
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786502   92 PV------------ACLLLTSAIAIKLGLTPFHFWFPEVLQGSPLITALLLSTMMKLPPTTILL-------ITSHSLNPS 152
Cdd:TIGR01770 191 FLsngmlnisllllGIVLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFLrlflyilFGFSEAWQI 270
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786502  153 LLTLMAIMSIALGGWMGLNQTQTRKIMAFSSISHLGWMIIIITYNPKLTLLA--FY--VYILMTASIFLTMNKINALKLP 228
Cdd:TIGR01770 271 FLAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIKAvlFYifIYALMSLGAFGVLSLLRSYKDE 350
                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 257786502  229 -----TLMTSWTKT-PALNTALMLTLLSLAGLPPLTGFLPKWLIIQELVKQEMTAATTIISMLSLLGLFFYLRLA 297
Cdd:TIGR01770 351 wieyiSDFAGLFKTnPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRVV 425
ND2 MTH00199
NADH dehydrogenase subunit 2; Provisional
10-296 2.08e-27

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177245 [Multi-domain]  Cd Length: 460  Bit Score: 111.65  E-value: 2.08e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786502  10 IVSILLGTTITITSNHWMTAWAGLEINTLSILPLIS-KSHHPRAVEAATKYFLVQATASALVLFSSTINAHSTGQWDI-- 86
Cdd:MTH00199 103 ILIVALGSLLLVSSINWLSIYLAIELQTLTLFILVAlKRDSAYSTEAGLKYFVLGAVSSGLFLFGCALLYGLTGETSIqg 182
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786502  87 --TQLTHPVACLLLTSAIAIKLGLTPFHFWFPEVLQGSPLITALLLSTMMKLPPTTILLITSHSLNpsLLTLMAIMSIAL 164
Cdd:MTH00199 183 inSILTGDVGKILITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILVQIGPVTN--VVLICAVLSIIY 260
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786502 165 GGWMGLNQTQTRKIMAFSSISHLGWMIIIITYNP----KLTLLAFYVYILMTA---SIFLTMNKINALKLPTLMTSwTKT 237
Cdd:MTH00199 261 GAIGALNQTKIKRLLAYSGIGHMGFILFGVAIGSfesiQASLIYMIIYVIMSIcsfSIILSLKLTKGLIVEVSGLS-RKN 339
                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 257786502 238 PALNTALMLTLLSLAGLPPLTGFLPKWLIIQELVKQEMTAATTIISMLSLLGLFFYLRL 296
Cdd:MTH00199 340 PVIALTLALTFLSIAGIPPLAGFLSKWLILLSGVSSGYYLICIIAVLSSVIAGVYYVRV 398
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
14-296 3.49e-23

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 99.45  E-value: 3.49e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786502  14 LLGTTITITSNHWMTAWAGLEINTLSILPLISKSHHPRAVEAATKYFLVQATASALVLFSSTINAHSTGQWDITQLTH-- 91
Cdd:COG0651  117 LAGMNGAFLTGDLFNLFVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYGATGTLNMADLAArl 196
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786502  92 --------PVACLLLTSAIAIKLGLTPFHFWFPEVLQGSP-LITALLLSTMMKLPPTTILLITSHSLNPS-------LLT 155
Cdd:COG0651  197 aeldpgllLAAFALLLVGFGIKAALFPLHFWLPDAYPAAPsPVSALLSGLLTKVGVYAILRVLTLLFGADpalflgtLLL 276
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786502 156 LMAIMSIALGGWMGLNQTQTRKIMAFSSISHLGWMIIIITYNPKLTLLAFYVYI----LMTASIFLT------------M 219
Cdd:COG0651  277 VLGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYILLGLGLGTPLGLAGALFHLlnhaLAKALLFLAagaieratgtrdL 356
                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 257786502 220 NKINALklptlmtsWTKTPALNTALMLTLLSLAGLPPLTGFLPKWLIIQELVKQEMTAATTIISMLSLLGLFFYLRL 296
Cdd:COG0651  357 DKLGGL--------GKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLAAVLLLSSLLTLAYFVRI 425
ND2 MTH00198
NADH dehydrogenase subunit 2; Provisional
3-296 1.25e-21

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214454 [Multi-domain]  Cd Length: 607  Bit Score: 95.70  E-value: 1.25e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786502   3 PLAKLISIVSILLGTTITITSNHWMTAWAGLEINTLSILPLISKSHHPRAV---------EAATKYFLVQATASALVLFS 73
Cdd:MTH00198 187 PRSGFALVLIVGLGGLLLIESANWLTIYLALEFQTLALFILAGEGSQPGSHfpspgntppESGLKYWILGAMSSGFYLFG 266
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786502  74 --------------STINAHSTGQWDITQLTHPVACLLLTSAIAIKLGLTPFHFWFPEVLQGSPLITALLLSTMMKLppT 139
Cdd:MTH00198 267 calyfgftgnegmlGTILSATLETTNIELRQGSLGYLFITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKF--T 344
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786502 140 TILLITSHSLNPSLLTLMAIMSIALGGWMGLNQTQTRKIMAFSSISHLGWMIIIITYNPKLTLLAFYVYI---LMTASIF 216
Cdd:MTH00198 345 VYILLTSLVITSKLLLSVAIISLVVGAFGALNQTRIKRLLAYSGIGHIGFILIGVSAGTYESLQASWTYAvtyLVSALAS 424
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786502 217 LTM----------------------NKINALKLPTLMTSWTKTPALNTALMLTLLSLAGLPPLTGFLPKWLIIQELVKQE 274
Cdd:MTH00198 425 FTVictleefgtrtptsrqrdgsfgNYNLVRRLVDLTILSRGQPYIAFSLAIVFLSLAGIPPLLGFLGKWFILVGSIKIA 504
                        330       340
                 ....*....|....*....|....*....
gi 257786502 275 MTAATTIISMLSLLGL-------FFYLRL 296
Cdd:MTH00198 505 FSSSLSIYYLVALFAIictcisaFYYIRI 533
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
33-298 1.78e-17

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 83.00  E-value: 1.78e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786502  33 LEINTLSILPLISKSHHPRAVEAATKYFLVQATASALVLFSSTINAHSTGQWDITQL--------THPVACLLLTSAIAI 104
Cdd:PRK08375 135 LEIMSLSSYALVAMGGDRRALAAARKYLIVGLIGSTFLLIGVGLLYGVTGTLNMADLagalaenpTVVTAFGFVLLALAL 214
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786502 105 KLGLTPFHFWFPEVLQG-SPLITALLLSTMMKLPPTTILLITSH------SLNPSLLTLM---AIMSIALGGWMGLNQTQ 174
Cdd:PRK08375 215 KAAVFPLHTWLPRAYPAaPPVVTALLSGLVTKVAVYALIRIYFTvfggdfRFALGLGWLLavlALLSMLVGSLAALGQDD 294
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786502 175 TRKIMAFSSISHLGWMIIIITYNPKLTLLAFYVYI----LMTASIFLT----MNKINALKLPTLMTSWTKTPALNTALML 246
Cdd:PRK08375 295 VKRVLAYSTVSQMGYILLGLALLTPLALAAGLLHLlhhaLMKGALFLAagaiEVTYGTRRLSELSGLGRRMPLTAAAFAV 374
                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|..
gi 257786502 247 TLLSLAGLPPLTGFLPKWLIIQELVKQEMTAATTIISMLSLLGLFFYLRLAY 298
Cdd:PRK08375 375 ASLSLIGVPPTSGFVSKWYLVVGAVEAGQWLVLAVLLASSLLALLYFLRIWY 426
ndhB CHL00049
NADH dehydrogenase subunit 2
51-263 2.90e-17

NADH dehydrogenase subunit 2


Pssm-ID: 176990 [Multi-domain]  Cd Length: 494  Bit Score: 82.36  E-value: 2.90e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786502  51 RAVEAATKYFLVQATASALVLFS-STINAHSTGQWDI---------TQLTHPVACLL----LTSAIAIKLGLTPFHFWFP 116
Cdd:CHL00049 159 RSNEATMKYLLMGGASSSILVYGfSWLYGLSGGEIELqeivnglinTQMYNSPGISIalifITVGIGFKLSLAPFHQWTP 238
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786502 117 EVLQGSPLITALLLSTMMKLP----PTTILLITSHSLNP---SLLTLMAIMSIALGGWMGLNQTQTRKIMAFSSISHLGW 189
Cdd:CHL00049 239 DVYEGSPTPVVAFLSVTSKVAasalATRIFDIPFYFSSNewhLLLEILAILSMILGNLIAITQTSMKRMLAYSSIGQIGY 318
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786502 190 MII-IITYNPKLTLLAFYVYILMtaSIFLTMNKINALKLPTLMT----------SWTKTPALNTALMLTLLSLAGLPPLT 258
Cdd:CHL00049 319 VIIgIIVGDSNDGYASMITYMLF--YIFMNLGTFACIVLFGLRTgtdnirdyagLYTKDPFLALSLALCLLSLGGIPPLA 396

                 ....*
gi 257786502 259 GFLPK 263
Cdd:CHL00049 397 GFFGK 401
PRK02504 PRK02504
NAD(P)H-quinone oxidoreductase subunit N;
50-263 7.41e-16

NAD(P)H-quinone oxidoreductase subunit N;


Pssm-ID: 235044 [Multi-domain]  Cd Length: 513  Bit Score: 78.17  E-value: 7.41e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786502  50 PRAVEAATKYFLVQATASALVLF-SSTINAHSTGQwdiTQLTH-------------PVACLLLTSAIAIKLGLTPFHFWF 115
Cdd:PRK02504 157 PRSNEAALKYLLIGAASSAIFLYgSSLLYGLSGGS---TQLSAialalitspslglALALVFVIAGIAFKISAVPFHQWT 233
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786502 116 PEVLQGSPLITALLLSTMMKLPPTTI---LLITSHSLNPS----LLTLMAIMSIALGGWMGLNQTQTRKIMAFSSISHLG 188
Cdd:PRK02504 234 PDVYEGSPTPVVAFLSVGSKAAGFALairLLVTAFPSFDEqwklLFTALAILSMVLGNVVALAQTSMKRMLAYSSIGQAG 313
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786502 189 WMIIIITYNPKLTLLAFYVYILmtASIFLTMNKINALKLPTLMTS----------WTKTPALNTALMLTLLSLAGLPPLT 258
Cdd:PRK02504 314 FVMIGLVAGTEAGYASMVFYLL--AYLFMNLGAFACVILFSLRTGtdqisdyaglYQKDPLLTLGLSLCLLSLGGIPPLA 391

                 ....*
gi 257786502 259 GFLPK 263
Cdd:PRK02504 392 GFFGK 396
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
33-266 4.54e-11

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 63.58  E-value: 4.54e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786502  33 LEINTLSILPLIS-KSHHPRAVEAATKYFLVQATASALVLFSSTInahSTGQWDI-------------TQLTHPVACLLL 98
Cdd:PRK08376 150 LEIMSIASYALVAfRNDTWEAIEAGIKYMFVGSLASSMVLLGIAL---LYGQYGTlnmaylavkmsenPTVVAKIALALF 226
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786502  99 TSAIAIKLGLTPFHFWFPEVLQGSPL-ITALLLST-------MMKLPPTTILLITSHSLNPSLLTLMAIMSIALGGWMGL 170
Cdd:PRK08376 227 IAGLAMKSGAVPVHMWLPDAYPAAPSsISAMLLVIkqaglyaLARVLFSIYGPAINLATVGWVIIILGCLTMFVGVAMAV 306
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786502 171 NQTQTRKIMAFSSISHLGWMII-----IITYNPklTLLAFYVYILMTASIFLTMNKINALKLPTL--------------- 230
Cdd:PRK08376 307 VQKDVKRLLAYHSVSQIGYMLLglgvgLAALGD--PAMASYGEIALAGGIYHIVNHALYKALLFLtagaviyetgtrnln 384
                        250       260       270
                 ....*....|....*....|....*....|....*...
gi 257786502 231 -MTSWTKT-PALNTALMLTLLSLAGLPPLTGFLPKWLI 266
Cdd:PRK08376 385 eLGGLARTmPKTTIAFLIGAAAIVGLPPFNGFASKWLI 422
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
23-275 2.67e-10

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 61.55  E-value: 2.67e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786502  23 SNHWMTAWAGLEINTLSILPLISKSHHpRAVEAATKYFLVQATASALVLFSSTINAHSTGQWDIT-------QLTHP--- 92
Cdd:PRK08668 117 ANDLLTLYIFWEIMTFSSFMMVPMGKK-ESRKASLKYFVLSAIGAYAMLYAIFLIYAKTGTFDFAdisqgliNDTSTgfa 195
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786502  93 -VACLLLTSAIAIKLGLTPFHFWFPEVLQGSPL-ITALL---LSTM--------MKLPPTTILLIT-----SHSLNPSLL 154
Cdd:PRK08668 196 lIVFLFLLAFGVAKAGIFPLHVWAPDAYSEAPQsFSAVLsgqLSKLgaygfllvLYVLPGTKLFSEfgtyrGVPLFNYIL 275
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786502 155 TLMAIMSIALGGWMGLNQTQTRKIMAFSSISHLGWMIIIITYNPKLTLLA--FYV--YILMTASIFLTmnkINALKLPTL 230
Cdd:PRK08668 276 AWLGNISIIVGTLMAILQEDIKKLIAYSSVANGGYILVGLGLGTSLGFAGglFHVfnHALFKGLFFLI---FAAVIYRTG 352
                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|..
gi 257786502 231 MTSWT-------KTPALNTALMLTLLSLAGLPPLTGFLPKWLIIQELVKQEM 275
Cdd:PRK08668 353 TTKISemgglieKMPFTFAMYLVAIISLAGIPPMSGFASKWLIFEALISKGM 404
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
33-296 3.83e-10

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 60.90  E-value: 3.83e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786502  33 LEINTLSILPLISKSHHPRAVEAATKYFLVQATASALVLFSSTINAHSTGQWDITQL-----------THPVACLLLTSA 101
Cdd:PRK12662 139 LEISSISSYVLVAMGRDKKALVAAFEYLIIGTIGATFYLIGIGFLYAITGTLNMGDMfliiqdlptnrAIQIGVLFIMVG 218
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786502 102 IAIKLGLTPFHFWFPEVLQGSPLITALLLS-TMMKLPPTTI-----------LLITSHSLNPSLLTLmAIMSIALGGWMG 169
Cdd:PRK12662 219 LFIKAALFPFHKWLIQAYSEAPSFISVFFSgTSTKVMIYLIirivydvfkanFVFTTLPFNNVFMIL-AALAIVFGSVLA 297
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786502 170 LNQTQTRKIMAFSSISHLGWMIIIITYNPKLTLLAFYVYI----LMTASIFLTMNKI----NALKLPTLMTSWTKTPALN 241
Cdd:PRK12662 298 ILSKDIKRIFAYSSISHIGYIILAVSLNTYYGLAAAVAYIvnhsIVKSALFMVSGSIsyhfGTTKLEDCLNLWKSMPKIT 377
                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 257786502 242 TALMLTLLSLAGLPPLTGFLPKWLIIQELVKQEMTAATTIISMLSLLGLFFYLRL 296
Cdd:PRK12662 378 LAFVLLSLSLIGMPPTSGFVAKWYILDAFIKSNAWIGLVVLLVGSGLSVIYVWKI 432
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
50-292 4.04e-10

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 60.72  E-value: 4.04e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786502   50 PRAVEAATKYFLVQATASALVLFS----STINAHSTGQWDITQLTHPVAC-----LLLTSAIAIKLGLTPFHFWFPEV-L 119
Cdd:TIGR01972 152 PNRIYAAMKFFLYTLAGSLLMLLAilglYFLGGGTFDLLELLNLPLPFGVqtwlfLAFFIAFAVKVPLFPLHTWLPDAhV 231
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786502  120 QGSPLITALLLSTMMKLPPTTILLI-------TSHSLNPSLLTLmAIMSIALGGWMGLNQTQTRKIMAFSSISHLGWMII 192
Cdd:TIGR01972 232 EAPTAGSVILAGVLLKMGTYGFLRFnlplfpdASLYFAPVLAAL-GVIAIIYGALIALAQTDIKRLIAYSSISHMGFVLL 310
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786502  193 -IITYNPKLTLLAFYVYI---LMTASIFL----TMNKINALKLPTLMTSWTKTPALNTALMLTLLSLAGLPPLTGFLPKW 264
Cdd:TIGR01972 311 gIFSFNELGISGAVFQMIshgLITAALFLlvgvLYERAHTRDIAKYGGLANKMPVLAAFFMLFAMASLGLPGTSGFVGEF 390
                         250       260
                  ....*....|....*....|....*...
gi 257786502  265 LIIQELVKqemtaATTIISMLSLLGLFF 292
Cdd:TIGR01972 391 LILLGSFK-----VNPVVAFLAALGIVL 413
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
49-267 4.66e-10

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 60.48  E-value: 4.66e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786502  49 HPRAVEAATKYFLVQATASALVLFSSTINAHSTGQW--DITQLTH--------PVACLLLTSAIAIKLGLTPFHFWFPEV 118
Cdd:COG1008  156 GERRIYAAIKFFLYTLAGSLLMLVAILALYFLAGALtfDIAELAAaplpltaqLLLFLAFFIAFAVKVPMFPFHTWLPDA 235
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786502 119 L-QGSPLITALLLSTMMK----------LPpttILLITSHSLNPSLLTLmAIMSIALGGWMGLNQTQTRKIMAFSSISHL 187
Cdd:COG1008  236 HvEAPTAGSVLLAGVLLKmggygllrfaLP---LFPEASAYFAPLLAAL-GVIGIIYGALVALAQTDLKRLIAYSSVSHM 311
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786502 188 GWMII-IITYNPKLTLLAFYVYI---LMTASIFL----TMNKINALKLPTLMTSWTKTPALNTALMLTLLSLAGLPPLTG 259
Cdd:COG1008  312 GFVLLgIFALNPLGLQGAVLQMVshgLITAALFLlvgvLYDRTHTRDIADLGGLAKRMPVLAALFLLAALASLGLPGTSG 391

                 ....*...
gi 257786502 260 FLPKWLII 267
Cdd:COG1008  392 FVGEFLVL 399
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
13-210 4.14e-08

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 54.38  E-value: 4.14e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786502  13 ILLGTTITITSNHWMTAWAGLEINTLSILPLISKSHHPRAVEAATKYFLVQATA------SALVLFSSTINAHSTGQWDI 86
Cdd:PRK08676 111 LLSVITFAFFSDNLALFWIFAELTTVFSAMLIAILSARENIDAALKYIFIASTAmifafiGLIFLFSLTRQALGTGTLNW 190
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786502  87 TQLTHPV----------ACLLLTSAIAIKLGLTPFHFWFPEVLQGSP-LITALLLSTMMKLPPTTILLITS-------HS 148
Cdd:PRK08676 191 TELAAHAsllspsvlgaSFLFIFIGFLAKSGLVPFHTWLPAAYAKAPsVVSALLSGTVLNIGIYGILRLSAllrqsgaAE 270
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 257786502 149 LNPSLLTLMAIMSIALGGWMGLNQTQTRKIMAFSSISHLGWMIIIITYNPKLTLLAFYVYIL 210
Cdd:PRK08676 271 QFSNVLIGLGIFSIAVAAFSMLSQRNLKKLIAFSSIEHMGLMLLGIGIGTPLALFWMLFHML 332
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
48-271 1.05e-07

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 53.23  E-value: 1.05e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786502  48 HHPRAVEAATKYFLVQAT------ASALVLFS-------STINAHstGQWDITQLTHPVACLLLTSAIAIKLGLTPFHFW 114
Cdd:COG1009  156 EKPSARRAARKAFLVTRVgdlgllLGILLLGAiagtlnfSELLAA--APTILSSPLLTLILLLLLLGAFGKSAQFPLHFW 233
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786502 115 FPEVLQG----SPLITAlllSTMMKlppTTI-LLITSH---SLNPSLLTLMAIMSIA---LGGWMGLNQTQTRKIMAFSS 183
Cdd:COG1009  234 LPDAMEGptpvSALLHA---ATMVK---AGVyLLARLSplfALSPVWLTVVAIIGAItalFAALIALAQTDIKRVLAYST 307
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786502 184 ISHLGWMIIIITynpkLTLLAFYVYILMT-----ASIFLT------------MNKINALklptlmtsWTKTPALNTALML 246
Cdd:COG1009  308 VSQLGYMFLALG----VGAYVAALFHLLThaffkALLFLGagsvihatgtrdIRKMGGL--------RKKMPITAITFLI 375
                        250       260
                 ....*....|....*....|....*
gi 257786502 247 TLLSLAGLPPLTGFLPKWLIIQELV 271
Cdd:COG1009  376 GALSLAGIPPFAGFFSKEAILEAAL 400
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
20-268 1.63e-07

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 52.62  E-value: 1.63e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786502  20 TITSNHWMTAWAGLEINTLSILPLISKSHHPRAVEAATKYFLVQATASALVLFsSTI----NAHstgqwdiTQLTHPVAC 95
Cdd:PRK06458 124 ALTSNNLGLMWVAIEATTLSSALLVGIYRTRASLEAAWKYIIICSVGVAFALF-GTIlvyaNAA-------TVMGDGEMA 195
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786502  96 LLLTSAIAI----------------------KLGLTPFHFWFPE-----------VLQGSPLITALLLSTMMKLppttIL 142
Cdd:PRK06458 196 ILWTELLKHaslldptlmklafvflligfgtKVGLFPMHAWLPDahseapspvsaLLSGVLLNVALYAVLRYYI----LI 271
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786502 143 LITSHSLNPS-LLTLMAIMSIALGGWMGLNQTQTRKIMAFSSISHLGWMIIIITYNPKLTLLAFYVYILM----TASIFL 217
Cdd:PRK06458 272 DAAIGSDFPGrLLLIFGLLSVLVAAFFLLRQRDIKRLFAYSSIEHMGLIAFALGIGGPLGIFAALLHMLNhsltKSAIFF 351
                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 257786502 218 T------------MNKINALklptlmtsWTKTPALNTALMLTLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:PRK06458 352 AsgnvlqkygtrdINVIRGL--------LKVSPLTGWGLMLGALAIAGMPPFGVFISEFLILT 406
PRK12647 PRK12647
putative monovalent cation/H+ antiporter subunit A; Reviewed
110-266 2.66e-07

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237156 [Multi-domain]  Cd Length: 761  Bit Score: 52.23  E-value: 2.66e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786502 110 PFHFWFPEVLQGSPLITALLLS-TMMKLpptTILLITShsLNPSL---------LTLMAIMSIALGGWMGLNQTQTRKIM 179
Cdd:PRK12647 213 PFHFWLPNAMEAPTPVSAYLHSaTMVKA---GIYLLAR--LNPVLggtplwqtiLPLFGGLTMLTGALLAVRQTDLKLIL 287
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786502 180 AFSSISHLGWMIIIITYNPKLTLLAFYVYI----LMTASIFLTmnkINALKLPTLMTSWTKTPALNTALMLTL------- 248
Cdd:PRK12647 288 AYSTVSALGTLVMLLGLGSELAIKAAVLFLvahsLYKGALFMV---AGIIDHETGTRDITKLGGLRRAMPITAaaallaa 364
                        170
                 ....*....|....*...
gi 257786502 249 LSLAGLPPLTGFLPKWLI 266
Cdd:PRK12647 365 LSMAGLPPLFGFLAKELI 382
PRK06277 PRK06277
energy conserving hydrogenase EhbF;
34-308 2.67e-07

energy conserving hydrogenase EhbF;


Pssm-ID: 235767 [Multi-domain]  Cd Length: 478  Bit Score: 51.96  E-value: 2.67e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786502  34 EINTLSILPLISKSHHPRAVEAATKYFLVQATASALVLFSSTINAHSTGQWDITQ-----LTHPVACLLLTSAIAIKLG- 107
Cdd:PRK06277 130 EIAAIVQVGLVIASGTEEAYKAALKYMILGNVAGSILLLGIGFLLASTGTLNITDihnalLVNPTSPVIYGGLLLLIFGl 209
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786502 108 -----LTPFHFWFPEVLQGSPLITALLLSTMMKLPPTTILLIT-----SHSLNPSLLTLMAIMSIA---LGGWMGLNQTQ 174
Cdd:PRK06277 210 lygsgLPPFHTIKSDIYAKAKPFGSALLQTFSKFVLVALMLVIfklfgGLSYFPSAQGVLIALSVLamvFGVVMALLQTD 289
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786502 175 TRKIMAFSSISHLGWMIIIITYNPKLTLLA--FYV--YILMTASIFLTMNKINALK----LPTLMTSWTKTPALNTALML 246
Cdd:PRK06277 290 YKRLLAYHAISQGGYVAAGLALGTPLGIVAgiFHAinHVIYKSALFLGAGIVSYRTktsnLRKLGGLLPVMPVVAFMVLC 369
                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 257786502 247 TLLSLAGLPPLTGFLPKWLIIQELVKQEMTAATTIISMLSLLGLFFYLRLAYcsTITLPPNP 308
Cdd:PRK06277 370 AKLAISGVPPFNGFQSKLMLAQAAMQANMPELAIIMIIVSIGTFVSMMKAFY--LIYLKPKP 429
PRK12665 PRK12665
putative monovalent cation/H+ antiporter subunit D; Reviewed
50-288 3.79e-07

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237165 [Multi-domain]  Cd Length: 521  Bit Score: 51.51  E-value: 3.79e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786502  50 PRAVEAATKYFLVQATASALVLFSSTINAHSTGQWDITQL----------THPVACLLLTSAIAIKLGLTPFHFWFPEVL 119
Cdd:PRK12665 157 AARVRAGVTYVMVSMVSSLLFLIGIALVYAATGTLNMADLavrldelpsgTRTALFAVLLVAFGIKAAVFPLSFWLPDSY 236
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786502 120 QGSP-LITALLLSTMMK-----LPPTTILLITSHSLNpSLLTLMAIMSIALGGWMGLNQTQTRKIMAFSSISHLGWMIII 193
Cdd:PRK12665 237 PTAPaPVTAVFAGLLTKvgvyaIIRTHTLLFPGGGLD-TLLMVVALLTMVVGILGAIAQSDIKRLLSFTLVSHIGYMVFG 315
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786502 194 ITYNPKLTLLA--FYV--YILMTASIFLTMNKIN----ALKLPTLMTSWTKTPALNTALMLTLLSLAGLPPLTGFLPKWL 265
Cdd:PRK12665 316 IALSTVAGLSGaiYYVahHITVQTTLFLVVGLIErqagSSSLRRLGGLAKASPLLAVLFFVPALNLGGIPPFSGFIGKVA 395
                        250       260
                 ....*....|....*....|....*....
gi 257786502 266 IIQELVKQ------EMTAATTIISMLSLL 288
Cdd:PRK12665 396 LLEAGAEDgtwlawALVAGGVVTSLLTLY 424
PRK07234 PRK07234
putative monovalent cation/H+ antiporter subunit D; Reviewed
33-271 4.10e-07

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235978 [Multi-domain]  Cd Length: 470  Bit Score: 51.49  E-value: 4.10e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786502  33 LEINTLSILPLISKSHHPRAVEAATKYFLVQATASALVLFSSTINAHSTGQWDITQLTH--PVACLLLTSAIAIKLGLTP 110
Cdd:PRK07234 123 LEVLSIATFLLVAYPRTDRAIWVGLRYLFYSNVAMLFYLIGAVLVYQANGTFAFSGLATadPEAFALIALGLLVKGGIFV 202
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786502 111 FHFWFPEVLQGSPLITALLLSTMMKLPPTTILLITSHSLNPS--LLTLMAIMSIALGGWMGLNQTQTRKIMAFSSISHLG 188
Cdd:PRK07234 203 SGLWLPLTHSEAEPPVSALLSGVVVKAGVFPLVRCALDVPGLdlIVRIFGVGTALLGVLFALLEKDLKRMLAFSTISQLG 282
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786502 189 WMIIiityNPKLTLLAFYVYILMTASIFLTmnkinALKLPTL-MTSWTKTPA-LNTALMLTL--LSLAGLPPLTGFLPKW 264
Cdd:PRK07234 283 FILA----APLVGGLYALAHGLVKSTLFLC-----AGALPSRnFTELISQMLgIGKWIPLTMasFSIAGFPLLAGFVSKV 353

                 ....*..
gi 257786502 265 LIIQELV 271
Cdd:PRK07234 354 LTLKNLL 360
PRK12663 PRK12663
Na+/H+ antiporter subunit D;
34-315 5.44e-07

Na+/H+ antiporter subunit D;


Pssm-ID: 237163 [Multi-domain]  Cd Length: 497  Bit Score: 51.10  E-value: 5.44e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786502  34 EINTLSILPLISKSHHPRAVEAATKYFLVQATASALVLFS--------STIN-AHSTGQWDITQLTHPVACL--LLTSAI 102
Cdd:PRK12663 138 EVMLIASFVLITLGQEREQLRGAIKYVVLNLIGSWLFLLGigllygtfGTLNmAHIAMRLNDMGDTATLTTIalLFLLAF 217
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786502 103 AIKLGLTPFhFWFPEVLQGSPLITALLLSTMMK-------LPPTTILLITSHSLNPSLLTLMAIMSIALGGWMGLNQTQT 175
Cdd:PRK12663 218 GMKAALFPF-MWLPAAYHTPNTEVAALFAALLTkvgiyalIRVFTLLFPQERELLHPLLATMAAITMVIGALGALAYKDI 296
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786502 176 RKIMAFSSISHLGWMIIIITYNPKLTL-----LAFYVYILMTAsIFLTMNKINAL----KLPTLMTSWTKTPALNTALML 246
Cdd:PRK12663 297 RRIAGYQVISSIGFILLGLALGTPAGIngaifYLVHDMVVKTA-LFLIAGSLVRLtgyrSLQYLGGLYRKEPLFGALFLI 375
                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 257786502 247 TLLSLAGLPPLTGFLPKWLIIQELVKQE---MTAATTIISMLSLLGLFFYLRLAYCSTITLPPNPPNKMKQW 315
Cdd:PRK12663 376 LIFAIGGLPPFSGFWGKVLLVQGALDNGayiLLALMLITSLITMYSLFRIFFLAYWGDKDGEEVNFKPIPLY 447
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
79-263 6.47e-07

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 51.08  E-value: 6.47e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786502  79 HSTGQWDITQL-THPVACLLLTSAIAI-------KLGLTPFHFWFPEVLQGSPLITALLLST-MMKlppTTILLI----- 144
Cdd:PRK12644 182 QAAGTYRLSELlADPPTGPAVSVAVVLilvgalsKSAIVPFHFWLPGAMAAPTPVSAYLHAAaMVK---AGIYLVarlap 258
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786502 145 ---TSHSLNPSLLTLmAIMSIALGGWMGLNQTQTRKIMAFSSISHLGWMIIIITYNPKLTLLAFYVYI----LMTASIFL 217
Cdd:PRK12644 259 gfaDVPVWRPTVLVL-GLATMLLGGWRALRQHDLKLILAYGTVSQLGFLTVLVGIGTRDAALAGLAMLlahaLFKAALFL 337
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|...
gi 257786502 218 TMNKINAL-------KLPTLmtsWTKTPALNTALMLTLLSLAGLPPLTGFLPK 263
Cdd:PRK12644 338 VVGIIDHStgtrdirKLSGL---GRRQPVLAVVAALAAASMAGLPPLLGFVAK 387
PRK12650 PRK12650
DUF4040 family protein;
79-304 1.11e-06

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 50.43  E-value: 1.11e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786502  79 HSTGQWDITQLTHPVACLLLTSAIAiKLGLTPFHFWFPEVLQGSPLITALL---------------LSTMMKLPPT-TIL 142
Cdd:PRK12650 196 HSDVWAEKPGLTTVVAVLIAVAAFT-KSAQFPFHFWLPEAMAAITPVSAFLhaaavvkagiylllrFSPVFHDVAVwNWL 274
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786502 143 LITShslnpSLLTlmAIMsialGGWMGLNQTQTRKIMAFSSISHLGWMIIIITYNPKLTLLAFYVYI----LMTASIFLT 218
Cdd:PRK12650 275 LIIV-----GMIT--ALM----GAVFAVQKTDLKKLTAYSTVSQLGWIVATIGVGTPFALTAAVVHTlahaLFKSSLFML 343
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786502 219 MNKIN----ALKLPTLMTSWTKTPALNTALMLTLLSLAGLPPLTGFLPKWLIIQELVKQEMTAATTIIsMLSLLGLFFYL 294
Cdd:PRK12650 344 IGVVDhqagTRDIRRLGSLWRRMPFTFVSVTIAALSMAAVPPLFGFVSKEGMLTAFLEAPGGNAGVVL-LLVGAALGAVF 422
                        250
                 ....*....|
gi 257786502 295 RLAYCSTITL 304
Cdd:PRK12650 423 TFAYSARLVL 432
ND5 MTH00020
NADH dehydrogenase subunit 5; Reviewed
72-305 3.44e-06

NADH dehydrogenase subunit 5; Reviewed


Pssm-ID: 214400 [Multi-domain]  Cd Length: 610  Bit Score: 48.53  E-value: 3.44e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786502  72 FSSTINAHSTGqwDITQLTHPvaCLLLTSAIAIKLGLTPFHFWFPEVLQGSPLITALLLSTMMKLPPTTILLITSHSLNP 151
Cdd:MTH00020 194 FSSVFNMVVSA--PSSDITLI--CLFLFIGAVGKSAQLGLHTWLPDAMEGPTPVSALIHAATMVTAGVFLLIRSSPLFEQ 269
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786502 152 SLLTLMAI-----MSIALGGWMGLNQTQTRKIMAFSSISHLGWMIIII-TYNPKLTLLAFYVYILMTASIFLTMNK-INA 224
Cdd:MTH00020 270 APLALIIVtivgsLTVFFAATVGLVQNDLKKVIAYSTCSQLGYMVVACgLSHYSISLFHLMNHAFFKALLFLSAGSvIHA 349
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786502 225 L-------KLPTLMTSwtkTPALNTALMLTLLSLAGLPPLTGFLPKWLIIQELVKQE-MTAATTIISMLSLLGLFFYLRL 296
Cdd:MTH00020 350 LsdeqdmrKMGGLISF---LPLTYIFFLIGSLSLMGFPYLTGFYSKDLILELAFGQYyLIFAYWLGCFSALLTAFYSIRL 426

                 ....*....
gi 257786502 297 AYCSTITLP 305
Cdd:MTH00020 427 IYLTFLSNT 435
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
50-194 4.12e-06

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 48.27  E-value: 4.12e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786502  50 PRAVEAATKYFLVQATASALVLFS----STINAHSTGQWDITQLTHP-----VACLLLTS---AIAIKLGLTPFHFWFPE 117
Cdd:PRK05846 157 KNRIYAATKFFLYTLLGSLLMLVAiiylVVVYYNATGTFDIADLLNLplppgVQYWLFLAffiAFAVKMPMFPLHTWLPD 236
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786502 118 VLQGSPLITALLLS-TMMKLPPTTILLI-------TSHSLNPSLLTLmAIMSIALGGWMGLNQTQTRKIMAFSSISHLGW 189
Cdd:PRK05846 237 AHVQAPTAGSVLLAgILLKMGAYGLLRFslplfpdASHEFAPIIITL-GVIAIIYGALVALAQTDIKKLIAYSSISHMGF 315

                 ....*
gi 257786502 190 MIIII 194
Cdd:PRK05846 316 VTLGI 320
ND5 MTH00032
NADH dehydrogenase subunit 5; Provisional
92-268 8.51e-06

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214407 [Multi-domain]  Cd Length: 669  Bit Score: 47.65  E-value: 8.51e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786502  92 PVACLLLTSAI--AIKLGLtpfHFWFPEVLQGSPLITALLLSTMMkLPPTTILLITSHSLNPS------LLTLMAIMSIA 163
Cdd:MTH00032 226 IIGILLLIGCIgkSAQLGL---HTWLPDAMEGPTPVSALIHAATM-VTAGVFLMIRSFPLFEKapltllIITIFGALTAF 301
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786502 164 LGGWMGLNQTQTRKIMAFSSISHLGWMIIIITY--NPKLTLLAFYVYILMTASIFL---------TMNKINALKLPTLMT 232
Cdd:MTH00032 302 FAATVGLVQNDLKKVIAYSTCSQLGYMVLIIGIegSHNVGLFHLVNHAFFKALLFLsagsvihstTVDEQDMRKMGGLIH 381
                        170       180       190
                 ....*....|....*....|....*....|....*.
gi 257786502 233 SwtkTPALNTALMLTLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:MTH00032 382 S---IPFTYTMMLIGSFSIMGLPYLTGFYSKDLILE 414
PRK08667 PRK08667
hydrogenase membrane subunit; Validated
34-291 8.77e-06

hydrogenase membrane subunit; Validated


Pssm-ID: 236331 [Multi-domain]  Cd Length: 644  Bit Score: 47.42  E-value: 8.77e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786502  34 EINTLSILPLISKSHHPRAVEAATKYFLVQATASALVLFSSTINAH-STGQWDITQLTHPVAC-----LLLTSAIAIKLG 107
Cdd:PRK08667 141 EIMALSSFFLVMNDYQEEETQRAGIFYFVMTQLSTVFLMLGIIVLFiQTGSFELSPLGASAGIlslvfLLLFLGFGIKAG 220
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786502 108 LTPFHFWFPEVLQGSPL-ITALLLSTMMKLPPTTILLITSHSLNPSL-----LTLMAIMSIALGGWMGLNQTQTRKIMAF 181
Cdd:PRK08667 221 IIPFHKWLPYAHPASPSnVSALMSGVMLKVAVYGLVRFLMDVLSPELwwgvlILLAGSISALLGVIYALKEHDLKGLLAY 300
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786502 182 SSISHLG--------WMIIIITYNPKLTLLA-------------FYVYILMTA-SIFLTMNKINALKLPTLMTSWTKTPA 239
Cdd:PRK08667 301 SSIENIGiilmgiglYVIFGVYGLDTLALLAlggalfhslnhalFKSLLFLTAgSVVHATGTRNIEKMGGLVKLMPYTSA 380
                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|...
gi 257786502 240 LntaLMLTLLSLAGLPPLTGFLPKWLIIQELVKQEMTAATTI-ISMLSLLGLF 291
Cdd:PRK08667 381 L---FLVGAVSIAALPPFNGFASELLLYESFFQSFSVADPLIkILLFSVLAIF 430
PRK07691 PRK07691
putative monovalent cation/H+ antiporter subunit D; Reviewed
103-296 9.02e-06

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 181085 [Multi-domain]  Cd Length: 496  Bit Score: 47.25  E-value: 9.02e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786502 103 AIKLGLTPFHFWFPEVLQGSPL-ITALLLSTMMKLPPTTIL----LITSHSLNPS--LLTLMAIMSIALGGWMGLNQTQT 175
Cdd:PRK07691 220 ATKAGLFPLYFWLPGSYYAPPIaIAALFGALLTKVGVYAIArtftLFFSHDTSFThyLILILALLTIIFGVIGAVAYFDI 299
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786502 176 RKIMAFSSISHLGWMIIIITYNPKLTLLAFYVY----ILMTASIFL---TMNKINALKLPTLMTSWTKT-PALNTALMLT 247
Cdd:PRK07691 300 KKIIIYNIMIAVGVILVGVAMMTESGMIGAIYYlihdMIVKAALFLligIMIKITGTTDLKKMGGLIKRyPVLGWMFFIA 379
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*....
gi 257786502 248 LLSLAGLPPLTGFLPKWLIIQELVKQEMTAATTIISMLSLLGLFFYLRL 296
Cdd:PRK07691 380 ALSLAGIPPLSGFYGKFFIVEGTFEAGFYVSGIIVLLSSLLVLYSVIKI 428
PRK06459 PRK06459
hydrogenase 4 subunit B; Validated
15-270 9.61e-06

hydrogenase 4 subunit B; Validated


Pssm-ID: 235806 [Multi-domain]  Cd Length: 585  Bit Score: 47.09  E-value: 9.61e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786502  15 LGTTITITSNHWMTAWAGLEINTLS---ILPLISKSHHPRAVEAATKYFlvqatASALVLFSSTINAHSTGQWDITQLTH 91
Cdd:PRK06459  83 LGMAIVLTSDNYLLFLAGWEIMTIPsyvAIALTKKNKRPAFVFMAFGEL-----STVLILAGFAWAFIISGTTNFSYLPS 157
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786502  92 PVACLLLTSAIAIKLGLTPFHF--WFPEVLQGSPL-ITALLLSTMMKLPPTTILLITSHSLNPSL----LTLMAI--MSI 162
Cdd:PRK06459 158 PVPLILASFGFIIKMGMMPFLVseWLPIAHGNAPSnFSAILSATMTLMGVYGILKMTILTQTIPIgyfgLTILAIgaFSI 237
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786502 163 ALGGWMGLNQTQTRKIMAFSSISHLGWMII-----IITYNPKLTLLAFYVYILMTASIFLTMNKINALKLPTLMTSWTKT 237
Cdd:PRK06459 238 LFGALYAYVSENVKGLLAFSTIENNGAILValglyMVTKQLITSIEHFSLITVILYSFAHSVAKTGLFLSSGLQEKQSIT 317
                        250       260       270       280
                 ....*....|....*....|....*....|....*....|
gi 257786502 238 PALNT-------ALMLTLLSLAGLPPLTGFLPKWLIIQEL 270
Cdd:PRK06459 318 YSKKIrnrwielGLTLLASSLSGLLPNIGGVASWLLLESL 357
PRK06525 PRK06525
hydrogenase 4 subunit D; Validated
33-267 3.49e-05

hydrogenase 4 subunit D; Validated


Pssm-ID: 180606 [Multi-domain]  Cd Length: 479  Bit Score: 45.35  E-value: 3.49e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786502  33 LEINTLSILPLISKSHHPRAVEAATKYFLVQATAS------ALVLFSSTINAHSTGQWDITQLTHPVACLLLTSAIAIKL 106
Cdd:PRK06525 142 FEITGLCSWALISYYQSPKALRSALKALLITHIGSlglylaAATLFLQTGTFALSALSGLHGSLKYLVFLGILFAAWGKS 221
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786502 107 GLTPFHFWFPEVLQGSPLITALLLSTMMKLPPTTILLITSHSLNPS------LLTLMAIMSIALGGWMGLNQTQTRKIMA 180
Cdd:PRK06525 222 AQLPFYSWLPDAMEAPTPASAYLHAASMVKVGVYIFARAIQSMGPIphvigyVGAVMAIVTLLYGFLMYLPQQDMKRLLA 301
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786502 181 FSSISHLGWMIIIITY---NPKLTLLAFYVYILMTASI----FLTMNKIN----ALKLPTLMTSWTKTPALNTALMLTLL 249
Cdd:PRK06525 302 YSTITQLGYMFFGLSLailGSRLALEGSIAYIFNHAFAkslfFLVAGALSyscgTRLLPRLRGVLKKLPLVGVGFCVAAL 381
                        250
                 ....*....|....*...
gi 257786502 250 SLAGLPPLTGFLPKWLII 267
Cdd:PRK06525 382 AITGVPPFNGFFSKFPIF 399
PRK08042 PRK08042
formate hydrogenlyase subunit 3; Reviewed
107-272 8.13e-05

formate hydrogenlyase subunit 3; Reviewed


Pssm-ID: 181206 [Multi-domain]  Cd Length: 593  Bit Score: 44.43  E-value: 8.13e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786502 107 GLTPFHFWFPEVLQGSPLITALLLSTM-MKLPPTTILLITSHSLNPSL-----LTLMAIMSIALGGWMGLNQTQTRKIMA 180
Cdd:PRK08042 195 GIIPLHGWVPQAHANASAPAAALFSTVvMKIGLLGILTLSLLGGNAPLwwgvaLLVLGMITAFVGGLYALMEHNIQRLLA 274
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786502 181 FSSISHLGWMII--------IITYNPKLTLLAFY--VYILMTASIFLTMNKINA---------LKLPTLMTSWTKTPALN 241
Cdd:PRK08042 275 YHTLENIGIILLglgagvtgIALEQPALIALGLVggLYHLLNHSLFKSVLFLGAgsvwfrtghRDIEKLGGIGKKMPVIS 354
                        170       180       190
                 ....*....|....*....|....*....|.
gi 257786502 242 TALMLTLLSLAGLPPLTGFLPKWLIIQELVK 272
Cdd:PRK08042 355 IAMLVGLMAMAALPPLNGFAGEWVIYQSFFK 385
PRK08377 PRK08377
NADH dehydrogenase subunit N; Validated
13-296 1.17e-04

NADH dehydrogenase subunit N; Validated


Pssm-ID: 181406 [Multi-domain]  Cd Length: 494  Bit Score: 43.60  E-value: 1.17e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786502  13 ILLGTTITITSNHWMTAWAGLEINTLSILPLISKSHHPRAVEAATKYFLVQATASALVLFSSTINAHSTGQWDITQLTH- 91
Cdd:PRK08377 117 LMLGATGMIATGDIFNLFVFMEITAITAYALTAYNKTGEAAEASMKYIVLGGIGSSFFLIGVALIYGATGTLNMAHIAQl 196
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786502  92 ---------PVACLLLTSAIAIKLGLTPFHFWFPEVLQGSPL-ITALLLSTMMK---LPPTTILLITSHSLNPS----LL 154
Cdd:PRK08377 197 agtidptvaQVGLALLIFGLAVEAELFPLNAWAPDAYQAAPHpITVMFSAFVVKaglYAMARILYLMQNANGWSsvlkLV 276
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786502 155 TLMAIMSIALGGWMGLNQTQTRKIMAFSSISHLGWMIIIITYNPKLTLLAFYVYIL----MTASIFLTMNKINALKLPTL 230
Cdd:PRK08377 277 IIMATLTVFFAELSALRQKNVKRMIAYSSIGQVGMIALALALGTQAGVDAGVFHMInhaiVKALLFLAVGYVGITLGGTE 356
                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786502 231 MTSWT----KTPALNTALMLTLLSLAGLPPLTGFLPKWLIIQELVKQEMTAATTIISMLSLLGLFFYLRL 296
Cdd:PRK08377 357 IEKFEglgkRMPLTALALTIGALSTVGIPLFNVFWSKFRIILAGLSAGYTWPVALVLGASVVEAVYYFRL 426
PRK12649 PRK12649
putative monovalent cation/H+ antiporter subunit A; Reviewed
48-263 1.24e-04

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 183649 [Multi-domain]  Cd Length: 789  Bit Score: 44.05  E-value: 1.24e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786502  48 HHPRAVEAATKYFLVQAtASALVLFSSTINAHS-TGQWDITQLTHP--------------VACLLLTSAIAIKLGLTPFH 112
Cdd:PRK12649 156 HRPESVYGATKSLLITA-GGGLFMFAGFLLLHViTGTYDIATILQDselienikghplflITLILIFIGAAAKSAQGPFY 234
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786502 113 FWFPEVLQGSPLITALLLSTMMkLPPTTILLITSH---SLNPSLLTLMA---IMSIALGGWMGLNQTQTRKIMAFSSISH 186
Cdd:PRK12649 235 IWLPNAMEAPTPVSAFLHSATM-VKAGVYLVARIHpifSGTEAWFILVSgtgMITMVLAGFLAFRQTDIKAILAYSTISQ 313
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786502 187 LGWMIIIITYN----PKLTLLAFYVYIL----MTASIFLTMNKI-------NALKLPTLMTSWTKTPALNTalmLTLLSL 251
Cdd:PRK12649 314 LAYLMTMYGYTtyhePGLGVAAATFHLLnhatFKACLFLVAGIVaheaatrDIRKLGGLRKEMPITFIVAS---IAALAM 390
                        250
                 ....*....|..
gi 257786502 252 AGLPPLTGFLPK 263
Cdd:PRK12649 391 AGIPPLNGFLSK 402
PRK06589 PRK06589
putative monovalent cation/H+ antiporter subunit D; Reviewed
11-289 1.56e-04

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235835 [Multi-domain]  Cd Length: 489  Bit Score: 43.27  E-value: 1.56e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786502  11 VSILLGTTITITSNhWMTAWAGLEINTLSILPLISKSHHPRAVEAATKYFLVqATASALVLF--SSTINAHSTGQWD--- 85
Cdd:PRK06589 124 LTILIGVLIALSSD-LFTMFVCYELLTISTAFLIGHTRNNISLSGGYKYLKI-LMISALLLFlpAVILIYTKTGNLDfvs 201
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786502  86 --ITQLTHPVACLLLTSAIAIKLGLTPFHFWFPEVLQGSPLITALLLSTMM----KLPPTTILLITSHSLNP-------S 152
Cdd:PRK06589 202 ggLFSKNQSIILLLMFIYGIAKTAIFPVHSWLPAAMVAHYPVSALLHAVIVvktgLFCIYKILLYIFGLSYLqrifaefN 281
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786502 153 LLTLMAIMSIALGGWMGLNQTQTRKIMAFSSISHLGWMIIIITYNPKLTLLAFYVYIL----MTASIFLTMNKINALK-- 226
Cdd:PRK06589 282 WLIFIPIVSIFYSSLKALKTDNIKKILAYSTISQLSLALLSAFILTPKALGAAILHLVshsfAKICLFYSMGSIYSLKke 361
                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 257786502 227 --LPTLMTSWTKTPALNTALMLTLLSLAGLPPLTGFLPKWLIIQELVKQEMTaATTIISMLSLLG 289
Cdd:PRK06589 362 dqVDKLHGTSKSFPLISFIISISSLSLIGIPIFSGFISKFLILLAASEQNQP-WLSIIVMLVVIA 425
PRK12646 PRK12646
DUF4040 family protein;
110-288 1.63e-04

DUF4040 family protein;


Pssm-ID: 183646 [Multi-domain]  Cd Length: 800  Bit Score: 43.59  E-value: 1.63e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786502 110 PFHFWFPEVLQGSPLITALLLSTMMKLPPTTILLITSHSLNPS-----LLTLMAIMSIALGGWMGLNQTQTRKIMAFSSI 184
Cdd:PRK12646 228 PFHIWLPRAMAAPTPVSAYLHSATMVKAGIFLLFRFTPLLGLSnmyiyIVTFVGLITMLFGSITALKQWDLKGILAYSTI 307
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786502 185 SHLGWMIIII------TYNPKLTLLAFYVYILMtASIFLTMN-----------------KINALKLPTLMTSWTKTPALN 241
Cdd:PRK12646 308 SQLGMIMAMVgigggyAQHQQDAIASIYVFVLF-AALFHLMNhaifkcalfmgvgiidhEAGTRDIRILSGMRQLFPKMN 386
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*..
gi 257786502 242 TALMLTLLSLAGLPPLTGFLPKWLIIQELVKQEMTAATTIISMLSLL 288
Cdd:PRK12646 387 LVMTIAALSMAGVPFLNGFLSKEMFLDALTQTGQLSQFSLISMIIIV 433
PRK06473 PRK06473
NADH-quinone oxidoreductase subunit M;
55-266 2.68e-04

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 235810 [Multi-domain]  Cd Length: 500  Bit Score: 42.76  E-value: 2.68e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786502  55 AATKYFLVQATASALVL--FSSTINAHSTGQWDITQL---THPVAC-LLLTSAI----AIKLGLTPFHFWFPEV-LQGSP 123
Cdd:PRK06473 158 AATKFLLYTAISGILILvsFLGLVWLSGASSFDYEPLrshTLPLSTqLLLLAPIlvgfGIKIPLVPFHTWLPDAhVEAST 237
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786502 124 LITALLLSTMMKLPPTTIL-------LITSHSLNPSLLTLmAIMSIALGGWMGLNQTQTRKIMAFSSISHLGWMIIIITY 196
Cdd:PRK06473 238 PVSVLLAGVLLKLGTYGLLrfgvglfPEAWVYLAPWLATW-AVVSVLYGASCAIAQKDMKKMVAYSSIGHMGYILLAAAA 316
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786502 197 NPKLTLLAFYVYI----LMTASIFLTMNKI-------NALKLPTLMTSWTKTPALNTALMLTLLSLAGLPPLTGFLPKWL 265
Cdd:PRK06473 317 ATPLSILAAVFQMishgLISALLFLLVGVVykktgsrDVDVLRGLLNPERGLPITGSLMILGVMASAGIPGMVGFIAEFL 396

                 .
gi 257786502 266 I 266
Cdd:PRK06473 397 V 397
ND4 MTH00226
NADH dehydrogenase subunit 4; Provisional
101-267 3.40e-04

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214466 [Multi-domain]  Cd Length: 505  Bit Score: 42.22  E-value: 3.40e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786502 101 AIAIKLGLTPFHFWFPEVLQGSPLITALLLS-TMMKLP-------PTTILLITSHSLNPSLLTlMAIMSIALGGWMGLNQ 172
Cdd:MTH00226 239 AMAVKIPIFPFHIWLPKAHVEAPVAGSVLLAgILLKLGgyglvrlSWPILPLGAQNLAPAVIA-MGIVGIVYGSFATCRQ 317
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786502 173 TQTRKIMAFSSISHLGWMIIIITYNPKLTLLAFYVYIL---MTASIFLTMNKINALKLPTLMTSWTK-----TPALNTAL 244
Cdd:MTH00226 318 IDVKRLVAYSSVAHMGLVSITLVTHDIIGLTGSIFIMLahgIVSSLLFILVTILYDRHHTRLIKYYRglsitMPIWGTIM 397
                        170       180
                 ....*....|....*....|...
gi 257786502 245 MLTLLSLAGLPPLTGFLPKWLII 267
Cdd:MTH00226 398 IVTSLANVAVPPSGNFIGEYLSI 420
ND5 MTH00209
NADH dehydrogenase subunit 5; Provisional
152-300 4.18e-04

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177252 [Multi-domain]  Cd Length: 564  Bit Score: 41.94  E-value: 4.18e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786502 152 SLLTLMAIMSialggwmGLNQTQTRKIMAFSSISHLGWMIIIITYN-PKLTLLAFYVYILMTASIFLTMNKI-----NAL 225
Cdd:MTH00209 247 SLTTLMASMS-------ANVESDLKKIIALSTLSQLGLMMCSLGLNqPELAFFHLITHALFKALLFICAGNIihshgHSQ 319
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 257786502 226 KLPTLMTSWTKTPALNTALMLTLLSLAGLPPLTGFLPKWLIIQELVKQEMTAATTIISMLSL-LGLFFYLRLAYCS 300
Cdd:MTH00209 320 DIRMVGNLWYQMPITSICLNIANLSLCGIPFLAGFYSKDLILESMLESNMPIMTLILMFLSTsLTAAYSMRLSYFS 395
PRK07363 PRK07363
NADH-quinone oxidoreductase subunit M;
55-268 5.29e-04

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 180945 [Multi-domain]  Cd Length: 501  Bit Score: 41.62  E-value: 5.29e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786502  55 AATKYFLVQATASALVLF----------SSTINAHSTGQWDITQLTHPVACLLLTSAIAIKLGLTPFHFWFPEV-LQGSP 123
Cdd:PRK07363 158 ASIKFLIYTAVSGLLVLAaflgivwlsgSTSFDYDAISTQNLSLNTQLILLTGLLLGFGIKIPLVPLHTWLPDAyTEASP 237
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786502 124 LITALLLSTMMKLPPTTILLI-------TSHSLNPSLLTLMAImSIALGGWMGLNQTQTRKIMAFSSISHLGWMIIIITY 196
Cdd:PRK07363 238 AVAILLGGVLAKLGTYGLLRFglqlfpqTWSLVAPGLAIIGTI-SVIYGALSAIAQKDIKRMVAYSSIGHMGYILVAAAA 316
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786502 197 NPKLTLLA----FYVYILMTASIFLTMNKINAL-------KLPTLMTSWTKTPALNTALMLTLLSLAGLPPLTGFLPKWL 265
Cdd:PRK07363 317 GTQLSLLGavaqMISHGLILALLFHLVGIVERKvgtrdldVLNGLMNPIRGLPLTSALLVLAGMASAGIPGLVGFVAEFI 396

                 ...
gi 257786502 266 IIQ 268
Cdd:PRK07363 397 VFQ 399
PRK12561 PRK12561
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
55-194 5.45e-04

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 237137 [Multi-domain]  Cd Length: 504  Bit Score: 41.56  E-value: 5.45e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786502  55 AATKYFLVQATASALVLFSSTINAHSTGQ--WDITQLTH---PVACLLLTS-----AIAIKLGLTPFHFWFPEVL-QGSP 123
Cdd:PRK12561 138 AATKFILYTALASIFILVAGLALALSGDTftFDLAELGAksyPLALELLLYagfliAFGVKLPIFPLHTWLPDAHgEASA 217
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 257786502 124 LITALLLSTMMKLPPTTI------LLITSHSLNPSLLTLMAIMSIALGGWMGLNQTQTRKIMAFSSISHLGWMIIII 194
Cdd:PRK12561 218 PVSMILAGVLLKMGGYALirfnvqMLPDAHVYFAPALAILGVVNIIYGALNAFAQDNVKRRLAYSSVSHMGFVLLGI 294
PRK08168 PRK08168
NADH-quinone oxidoreductase subunit L;
10-129 7.28e-04

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236171 [Multi-domain]  Cd Length: 516  Bit Score: 41.22  E-value: 7.28e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786502  10 IVSILLGTTITITSNHW---MTAWA--GLEINTLsilpLISKSHHPRAVEAATKYFLVQATASALVLFSSTINAHSTGQW 84
Cdd:PRK08168 106 LAGVLAAVHLLVLSDHLlvlIAAWAaiSLALHRL----LCFYPDRPFARLAAHKKFIADRLAELLLLAAAALAYLEVGSL 181
                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 257786502  85 DITQL--------THP---VACLLLTSAIAIKLGLTPFHFWFPEVLQGSPLITALL 129
Cdd:PRK08168 182 SLSALwahlaaqgASPslqAAALLLVLAVILKTAQLPVHGWLIQVMEAPTPVSALL 237
ND5 MTH00210
NADH dehydrogenase subunit 5; Provisional
96-303 1.42e-03

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177253 [Multi-domain]  Cd Length: 616  Bit Score: 40.38  E-value: 1.42e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786502  96 LLLTSAI--AIKLGLtpfHFWFPEVLQGSPLITALLLSTMMkLPPTTILLITSHSL---NPSLLTLMAI---MSIALGGW 167
Cdd:MTH00210 216 LLFIGAVgkSAQLGL---HTWLPDAMEGPTPVSALIHAATM-VTAGVFLIIRSGPLfegSPLALTIVTIlgaLTAFFAAT 291
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786502 168 MGLNQTQTRKIMAFSSISHLGWMII---IITYNPKLTLL---AFYvyilmTASIFLTMNK-INAL-------KLPTLMTS 233
Cdd:MTH00210 292 VGVVQNDLKKVIAYSTCSQLGYMVMvcgISNYSTSLFHLmnhAFF-----KALLFLSAGSvIHAVsdeqdmrKMGGLIKS 366
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 257786502 234 wtkTPALNTALMLTLLSLAGLPPLTGFLPKWLIIqELV--KQEMTAATTIISMLSLLGLFFYLRLAYCSTIT 303
Cdd:MTH00210 367 ---IPFTYVMILIGSLSLMGFPYLTGFYSKDLIL-ELTydKYYIAFAYWLGSFSALLTAFYSIRLIYLTFIT 434
ND5 MTH00207
NADH dehydrogenase subunit 5; Provisional
80-268 1.56e-03

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 164753 [Multi-domain]  Cd Length: 572  Bit Score: 40.13  E-value: 1.56e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786502  80 STGQWDITQLTHPVACLLLTSAIAI----KLGLTPFHFWFPEVLQGSPLITALLLSTMMKLPPTTILL-----ITSHSLN 150
Cdd:MTH00207 163 NQGHWSITNMWQTDMNNYIALSIMIaamtKSAQMPFSSWLPAAMAAPTPVSALVHSSTLVTAGVFLLIrfypfLSSTYWF 242
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786502 151 PSLLTLMAIMSIALGGWMGLNQTQTRKIMAFSSISHLGWMIIIITYN-PKLTLLAFYVYILMTASIFLTMNKI-----NA 224
Cdd:MTH00207 243 NPALLLTASLTMLMAGLSAMTECDMKKIIALSTLSQLGVMMASLGLGmPKLALFHLITHALFKALLFVCAGSLihshhHS 322
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....
gi 257786502 225 LKLPTLMTSWTKTPALNTALMLTLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:MTH00207 323 QDLRTMGNLTNQMPLTTSCLLIANLALCGSPFLSGFYSKDLILE 366
PRK12666 PRK12666
putative monovalent cation/H+ antiporter subunit D; Reviewed
93-290 9.53e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237166 [Multi-domain]  Cd Length: 528  Bit Score: 37.91  E-value: 9.53e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786502  93 VACLLLTSAIAIKLGLTPFHFWFPEVLQGSPLITALLLSTMMKLPPTTILLIT----------SHSLNPSLLTLMAIMSI 162
Cdd:PRK12666 211 AGAALLLVVFLIKAAMWPLNFWLPPAYAAASAPVAALFAIMTKVGIYAILRLStllfgpeagaSAGFGQDWLLPGGLATL 290
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786502 163 ALGGWMGLNQTQTRKIMAFSSISHLGWMIIIITY-NPKLTLLAFYvYI----LMTASIFL-------------------- 217
Cdd:PRK12666 291 AFGAIGVLAAQRLRRLAAYLVLVSSGTLLAAIGLgNPAATAAALY-YLvhstLAAAALFLladlverqrgaaadrlavtp 369
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 257786502 218 TMNKINALKLPTLMTSWTKTPA-LNTALMLTLLSLAGLPPLTGFLPKWLIIQELVKQEMTAAT-TIISMLSLLGL 290
Cdd:PRK12666 370 ELYDLDEEEEEEVGVAIPATMAlLGLLFFICALALAGLPPLSGFLGKFALLQALLNPPGAGAAwWLWALVLLSGL 444
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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