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Conserved domains on  [gi|257786386|gb|ACV66906|]
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NADH dehydrogenase subunit 2 (mitochondrion) [Brotogeris versicolurus]

Protein Classification

NADH dehydrogenase subunit 2( domain architecture ID 11475904)

NADH dehydrogenase subunit 2 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), which functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-346 7.55e-152

NADH dehydrogenase subunit 2; Provisional


:

Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 430.40  E-value: 7.55e-152
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786386   1 MTPLAKLISTMSILLGTTITITSNHWMTAWAGLEINTLSILPLISKSHHPRAVEAATKYFLVQATASALVLFSCTINAHS 80
Cdd:MTH00112   1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786386  81 TGQWDITQLTHPLACLLLTSAIAIKLGLTPFHFWFPEVLQGSSLTTALLLSTVMKLPPTTILLITSHSLNPTFLTLTAIM 160
Cdd:MTH00112  81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786386 161 SIAFGGWMGLNQTQTRKIMAFSSISHLGWMTIIITYNPKLTLLTFYIYILMTTSIFLTMNKINALKLPTLLTSWTKAPML 240
Cdd:MTH00112 161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786386 241 NTTLMLTLLSLAGLPPLTGFLPKWLIIQELIKQEMTATTTIISMLSLLGLFFYLRLAYCSTITLPPSPPNKMKQWPPKTS 320
Cdd:MTH00112 241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                        330       340
                 ....*....|....*....|....*.
gi 257786386 321 TNTLIPTFTSLSILLLPLAPLMPTIT 346
Cdd:MTH00112 321 KNTLTATLTTLSTLLLPLSPMILTII 346
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-346 7.55e-152

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 430.40  E-value: 7.55e-152
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786386   1 MTPLAKLISTMSILLGTTITITSNHWMTAWAGLEINTLSILPLISKSHHPRAVEAATKYFLVQATASALVLFSCTINAHS 80
Cdd:MTH00112   1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786386  81 TGQWDITQLTHPLACLLLTSAIAIKLGLTPFHFWFPEVLQGSSLTTALLLSTVMKLPPTTILLITSHSLNPTFLTLTAIM 160
Cdd:MTH00112  81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786386 161 SIAFGGWMGLNQTQTRKIMAFSSISHLGWMTIIITYNPKLTLLTFYIYILMTTSIFLTMNKINALKLPTLLTSWTKAPML 240
Cdd:MTH00112 161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786386 241 NTTLMLTLLSLAGLPPLTGFLPKWLIIQELIKQEMTATTTIISMLSLLGLFFYLRLAYCSTITLPPSPPNKMKQWPPKTS 320
Cdd:MTH00112 241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                        330       340
                 ....*....|....*....|....*.
gi 257786386 321 TNTLIPTFTSLSILLLPLAPLMPTIT 346
Cdd:MTH00112 321 KNTLTATLTTLSTLLLPLSPMILTII 346
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 10-298 1.33e-30

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 120.99  E-value: 1.33e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786386  10 TMSILLGTTITITSNHWMTAWAGLEINTLSILPLIS-KSHHPRAVEAATKYFLVQATASALVLFSCTINAHSTGQWDITQ 88
Cdd:COG1007  108 LLFATLGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYGISLLYGATGSLNLAG 187

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786386  89 LTHPL------------ACLLLTSAIAIKLGLTPFHFWFPEVLQGSSLTTALLLSTVMKL----PPTTILLITSHSLNPT 152
Cdd:COG1007  188 IAAALaagganspllllGLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIaafaALLRLLVEAFPGLAAD 267

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786386 153 F---LTLTAIMSIAFGGWMGLNQTQTRKIMAFSSISHLGWMTI-IITYNPK-LTLLTFY--IYILMTTSIFLTMNKI-NA 224
Cdd:COG1007  268 WqllLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLgLAAGTPLgVSAALFYllAYLFMNLGAFAVILLLsRK 347

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 257786386 225 LKLPTLLTSW----TKAPMLNTTLMLTLLSLAGLPPLTGFLPKWLIIQELIKQEMTATTTIISMLSLLGLFFYLRLAY 298
Cdd:COG1007  348 GGEAEEIEDLaglaRRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLRVVK 425
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 23-268 1.13e-25

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 104.32  E-value: 1.13e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786386   23 SNHWMTAWAGLEINTLSILPLI-SKSHHPRAVEAATKYFLVQATASALVLFSCTINAHSTGQWDITQL-----------T 90
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELskaltgglnssG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786386   91 HPLACLLLTSAIAIKLGLTPFHFWFPEVLQGSSLT-TALLLSTVMKLPPttILLITSHSLNPT-------FLTLTAIMSI 162
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPvSALLAATLVKAGG--YGLIRRSLLYLPsspfiqqILLILAIISM 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786386  163 AFGGWMGLNQTQTRKIMAFSSISHLGWMTIII----TYNPKLTLLTFYIYILMTTSIFLTMNKINALKLPTLLTS----- 233
Cdd:pfam00361 159 LLGSLAALVQTDIKRLLAYSSISHMGYMLIALgagtIYGIQAAIFHLLTHGLFSAGLFLCAGSVIYRRVHTRNIRdyggl 238

                         250       260       270
                  ....*....|....*....|....*....|....*
gi 257786386  234 WTKAPMLNTTLMLTLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:pfam00361 239 AKTMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 13-297 5.09e-25

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 105.03  E-value: 5.09e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786386   13 ILLGTTITITSNHWMTAWAGLEINTLSILPLIS-KSHHPRAVEAATKYFLVQATASALVLFSCTINAHSTGQWDITQLTH 91
Cdd:TIGR01770 111 ALLGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLL 190

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786386   92 PL------------ACLLLTSAIAIKLGLTPFHFWFPEVLQGSSLTTALLLSTVMKLPPTTILL-------ITSHSLNPT 152
Cdd:TIGR01770 191 FLsngmlnisllllGIVLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFLrlflyilFGFSEAWQI 270

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786386  153 FLTLTAIMSIAFGGWMGLNQTQTRKIMAFSSISHLGWMTIIITYNPKLTL--LTFY--IYILMTTSIF---LTMNKIN-- 223
Cdd:TIGR01770 271 FLAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIkaVLFYifIYALMSLGAFgvlSLLRSYKde 350

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 257786386  224 -ALKLPTLLTSWTKAPMLNTTLMLTLLSLAGLPPLTGFLPKWLIIQELIKQEMTATTTIISMLSLLGLFFYLRLA 297
Cdd:TIGR01770 351 wIEYISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRVV 425
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-346 7.55e-152

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 430.40  E-value: 7.55e-152
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786386   1 MTPLAKLISTMSILLGTTITITSNHWMTAWAGLEINTLSILPLISKSHHPRAVEAATKYFLVQATASALVLFSCTINAHS 80
Cdd:MTH00112   1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786386  81 TGQWDITQLTHPLACLLLTSAIAIKLGLTPFHFWFPEVLQGSSLTTALLLSTVMKLPPTTILLITSHSLNPTFLTLTAIM 160
Cdd:MTH00112  81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786386 161 SIAFGGWMGLNQTQTRKIMAFSSISHLGWMTIIITYNPKLTLLTFYIYILMTTSIFLTMNKINALKLPTLLTSWTKAPML 240
Cdd:MTH00112 161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786386 241 NTTLMLTLLSLAGLPPLTGFLPKWLIIQELIKQEMTATTTIISMLSLLGLFFYLRLAYCSTITLPPSPPNKMKQWPPKTS 320
Cdd:MTH00112 241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                        330       340
                 ....*....|....*....|....*.
gi 257786386 321 TNTLIPTFTSLSILLLPLAPLMPTIT 346
Cdd:MTH00112 321 KNTLTATLTTLSTLLLPLSPMILTII 346
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 1-324 7.57e-124

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 359.50  E-value: 7.57e-124
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786386   1 MTPLAKLISTMSILLGTTITITSNHWMTAWAGLEINTLSILPLISKSHHPRAVEAATKYFLVQATASALVLFSCTINAHS 80
Cdd:MTH00135   1 MNPYVLTILLFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786386  81 TGQWDITQLTHPLACLLLTSAIAIKLGLTPFHFWFPEVLQGSSLTTALLLSTVMKLPPTtILLITSHSLNPTFLTLTAIM 160
Cdd:MTH00135  81 TGQWDIQQMSHPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPF-ALILQIAPTNPTLLITLGLT 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786386 161 SIAFGGWMGLNQTQTRKIMAFSSISHLGWMTIIITYNPKLTLLTFYIYILMTTSIFLTMNKINALKLPTLLTSWTKAPML 240
Cdd:MTH00135 160 STLVGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPAL 239

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786386 241 NTTLMLTLLSLAGLPPLTGFLPKWLIIQELIKQEMTATTTIISMLSLLGLFFYLRLAYCSTITLPPSPPNKMKQWPPKTS 320
Cdd:MTH00135 240 TALTPLILLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPWRLPST 319


                 ....
gi 257786386 321 TNTL 324
Cdd:MTH00135 320 QLTL 323
ND2 MTH00070
NADH dehydrogenase subunit 2; Provisional
 1-329 1.60e-123

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 358.85  E-value: 1.60e-123
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786386   1 MTPLAKLISTMSILLGTTITITSNHWMTAWAGLEINTLSILPLISKSHHPRAVEAATKYFLVQATASALVLFSCTINAHS 80
Cdd:MTH00070   1 MSPYALSILLSSLALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786386  81 TGQWDITQLTHPLACLLLTSAIAIKLGLTPFHFWFPEVLQGSSLTTALLLSTVMKLPPTTILLITSHSLNPTFLTLTAIM 160
Cdd:MTH00070  81 TGEWTIMNMQTPLPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQISHLLNSNLLIIMGLL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786386 161 SIAFGGWMGLNQTQTRKIMAFSSISHLGWMTIIITYNPKLTLLTFYIYILMTTSIFLTMNKINALKLPTLLTSWTKAPML 240
Cdd:MTH00070 161 STLIGGWGGLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786386 241 NTTLMLTLLSLAGLPPLTGFLPKWLIIQELIKQEMTATTTIISMLSLLGLFFYLRLAYCSTITLPPSPPNKMKQWPPKTS 320
Cdd:MTH00070 241 TSMMMLTLLSLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYAMSLTTSPNTSNSKLYWRFKNK 320


                 ....*....
gi 257786386 321 TNTLIPTFT 329
Cdd:MTH00070 321 TNNLLSLTI 329
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 1-329 1.00e-112

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 331.43  E-value: 1.00e-112
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786386   1 MTPLAKLISTMSILLGTTITITSNHWMTAWAGLEINTLSILPLISKSHHPRAVEAATKYFLVQATASALVLFSCTINAHS 80
Cdd:MTH00105   1 MNPLILIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMY 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786386  81 TGQWDITQLTHPLACLLLTSAIAIKLGLTPFHFWFPEVLQGSSLTTALLLSTVMKLPPTTILLITSHSLNPTFLTLTAIM 160
Cdd:MTH00105  81 SGQWTITKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786386 161 SIAFGGWMGLNQTQTRKIMAFSSISHLGWMTIIITYNPKLTLLTFYIYILMTTSIFLTMNKINALKLPTLLTSWTKAPML 240
Cdd:MTH00105 161 SILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLM 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786386 241 NTTLMLTLLSLAGLPPLTGFLPKWLIIQELIKQEMTATTTIISMLSLLGLFFYLRLAYCSTITLPPSPPN-KMKQWPPKT 319
Cdd:MTH00105 241 TSLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFPSTNNmKMKWQFENT 320

                        330
                 ....*....|
gi 257786386 320 STNTLIPTFT 329
Cdd:MTH00105 321 KPMTLLPTLI 330
ND2 MTH00200
NADH dehydrogenase subunit 2; Provisional
 1-329 4.08e-93

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177246 [Multi-domain]  Cd Length: 347  Bit Score: 281.47  E-value: 4.08e-93
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786386   1 MTPLAKLISTMSILLGTTITITSNHWMTAWAGLEINTLSILPLISKSHHPRAVEAATKYFLVQATASALVLFSCTINAHS 80
Cdd:MTH00200   1 MSPLILPLFILSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWT 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786386  81 TGQWDITQLTHPLACLLLTSAIAIKLGLTPFHFWFPEVLQGSSLTTALLLSTVMKLPPTTILLITSHSLNPTFLTLTAIM 160
Cdd:MTH00200  81 SGQWGISEMLGPLSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLAPALNSNILLLLGLL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786386 161 SIAFGGWMGLNQTQTRKIMAFSSISHLGWMTIIITYNPKLTLLTFYIYILMTTSIFLTMNKINALKLPTLLTSWTKAPML 240
Cdd:MTH00200 161 SVLVGGWGGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPIL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786386 241 NTTLMLTLLSLAGLPPLTGFLPKWLIIQELIKQEMTATTTIISMLSLLGLFFYLRLAYCSTITLPPSPPNKMKQWPPKTS 320
Cdd:MTH00200 241 SMLLGLTLLSLGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLTLLTLSPNQINMMSSWRTKSN 320


                 ....*....
gi 257786386 321 TNTLIPTFT 329
Cdd:MTH00200 321 SNLLVGLLL 329
ND2 MTH00041
NADH dehydrogenase subunit 2; Validated
 12-306 1.54e-83

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 177116 [Multi-domain]  Cd Length: 349  Bit Score: 256.78  E-value: 1.54e-83
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786386  12 SILLGTTITITSNHWMTAWAGLEINTLSILPLISKSHHPRAVEAATKYFLVQATASALVLFSCTINAHSTGQWDITQLTH 91
Cdd:MTH00041  12 SIILGTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWLSGSWSINGPLN 91

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786386  92 PLACLLLTSAIAIKLGLTPFHFWFPEVLQGSSLTTALLLSTVMKLPPTTILLITSHSLNPTFLTLTAIMSIAFGGWMGLN 171
Cdd:MTH00041  92 TLSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNLLNSNILILCGILSVLVGGWGGLN 171

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786386 172 QTQTRKIMAFSSISHLGWMTIIITYNPKLTLLTFYIYILMTTSIFLTMNKINALKLPTLLTSWTKAPMLNTTLMLTLLSL 251
Cdd:MTH00041 172 QTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPISAFLFILSILSL 251

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 257786386 252 AGLPPLTGFLPKWLIIQELIKQEMTATTTIISMLSLLGLFFYLRLAYCSTITLPP 306
Cdd:MTH00041 252 GGLPPLTGFLNKFISLYCLIQNNSILISIILIIGSLLSLFFYLRISFNTSLTLFP 306
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 1-328 2.50e-60

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 196.58  E-value: 2.50e-60
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786386   1 MTPLAKLISTMSILLGTTITITSNHWMTAWAGLEINTLSILPLISKSHHPRAVEAATKYFLVQATASALVLFSCTINAHS 80
Cdd:MTH00160   2 MMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNMLN 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786386  81 TGqwditqLTHPLACLLLTSAIAIKLGLTPFHFWFPEVLQGSSLTTALLLSTVMKLPPTTILlitSHSLNPTFLTLTAIM 160
Cdd:MTH00160  82 LM------LFNNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILL---SYLINNNFIIIIIIL 152

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786386 161 SIAFGGWMGLNQTQTRKIMAFSSISHLGWMTIIITYNPKLTLLTFYIYILMTTSIFLTMNKINALKLPTLLTSWTKAPML 240
Cdd:MTH00160 153 SAIIGAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKI 232

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786386 241 NTTLMLTLLSLAGLPPLTGFLPKWLIIQELIKQEMTATTTIISMLSLLGLFFYLRLAYCSTITLPPSPPNKMKQWPPKTS 320
Cdd:MTH00160 233 KFLLFLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLMLNYNKNKWNLKKKKNKFS 312


                 ....*...
gi 257786386 321 TNTLIPTF 328
Cdd:MTH00160 313 LILNFLSF 320
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
 1-302 1.71e-49

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 168.53  E-value: 1.71e-49
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786386   1 MTPLAKLISTMSILLGTTITITSNHWMTAWAGLEINTLSILPLISKSHHPRAVEAATKYFLVQATASALVLFSCTINAHS 80
Cdd:MTH00144   1 MSSPSNLLFLFLMVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786386  81 TGQWDITqlthplacLLLTSAIAIKLGLTPFHFWFPEVLQGSSLTTALLLSTVMKLPPT-TILLITSHSLNPTFLTLTAI 159
Cdd:MTH00144  81 SFSWFSM--------SLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLfLLSNFLDLYWLAYLLCVISV 152

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786386 160 MSIAFGGWMGLNQTQTRKIMAFSSISHLGWMTIIITYNPKLTLLTFYIYILMTTSIFLTMNKINaLKLPTLLTSWTKAPM 239
Cdd:MTH00144 153 LSALVGSIGGLNQTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSLWSGD-SGSMKDLGSLKPSYK 231

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 257786386 240 LNTTLMLTLLSLAGLPPLTGFLPKWLIIQELIKQEMTATTTIISMLSLLGLFFYLRLAYCSTI 302
Cdd:MTH00144 232 TGLSIISLLLSLGGLPPFLGFCSKLLVLISSMESSPLLLILLLLLGSLISLFFYLSVFFSSFL 294
ND2 MTH00011
NADH dehydrogenase subunit 2; Validated
 1-329 6.16e-49

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 164587 [Multi-domain]  Cd Length: 330  Bit Score: 166.88  E-value: 6.16e-49
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786386   1 MTPLAKLISTMSILlGTTITITSNHWMTAWAGLEINTLSILPLISKSHHPRAVEAATKYFLVQATASALVLFSctinahS 80
Cdd:MTH00011   4 TFPTMFLFSSTMTL-GTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLG------M 76

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786386  81 TGQWDITQLTHPLACLLLTSAIAIKLGLTPFHFWFPEVLQGSSLTTALLLSTVMKLPPTTILLITSHSLNPTFLTLTAIM 160
Cdd:MTH00011  77 TMMWSFPSLLKNITALMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNILPMMTSMAAM 156

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786386 161 SIAFGGWMGLNQTQTRKIMAFSSISHLGWMTIIITYNPKLTLLTFYIYILMTTSIFLTMNKINALKLPTLLTSWTKAPML 240
Cdd:MTH00011 157 SALAGGLGGMNQTQLRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTT 236

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786386 241 NTTLMLTLLSLAGLPPLTGFLPKWLIIQELIKQEMTATTTIISMLSLLGLFFYLRLAYCSTITLPPSPPNKMKQWPPKTS 320
Cdd:MTH00011 237 SMSLFIMLLSLGGLPPFTGFMPKLMAIETLTSNSMILILLVLIVGSLMNLFYYLNLIFNFMYLSPTFSSLKSAPYEPKTK 316


                 ....*....
gi 257786386 321 TNTLIPTFT 329
Cdd:MTH00011 317 ILISMCTLS 325
ND2 MTH00197
NADH dehydrogenase subunit 2; Provisional
 12-302 1.06e-45

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177244 [Multi-domain]  Cd Length: 323  Bit Score: 158.30  E-value: 1.06e-45
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786386  12 SILLGTTITITSNHWMTAWAGLEINTLSILPLISKSHHPRAVEAATKYFLVQATASALVLFSCtinahSTGQWDITqlTH 91
Cdd:MTH00197   6 IIFGGVLFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMGG-----SLSFSNLY--LS 78

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786386  92 PLACLLLTSAIAIKLGLTPFHFWFPEVLQGSSLTTALLLSTVMKLPPTTILLITSHslNPTFLTLTAIMSIAFGGWMGLN 171
Cdd:MTH00197  79 LLSVVLVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAPLLILAFNSS--SFMGLLICSVLSSLIGGIGGMN 156

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786386 172 QTQTRKIMAFSSISHLGWMTIIITYNPKLTLLTFYIYILMTTSIFLTMNKINALKLPTLLTSWTKAPMLNTTLMLTLLSL 251
Cdd:MTH00197 157 QSNIRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQQYSNPESMSSNLVFLGLSFLSL 236

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|.
gi 257786386 252 AGLPPLTGFLPKWLIIQELIKQEMTATTTIISMLSLLGLFFYLRLAYCSTI 302
Cdd:MTH00197 237 GGLPPLSGFFLKWLILTSLLSSNISLITFMLILSTCFSLYYYLSLAYKSLI 287
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
 13-296 3.54e-32

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 123.60  E-value: 3.54e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786386  13 ILLGTTITITSNHWMTAWAGLEINTLSILPLI-SKSHHPRAVEAATKYFLVQATASALVLFSCTINAHSTGQWDI----- 86
Cdd:MTH00196   2 VALGILCLISSSNWLSVYLAIELQTLSLFILIaQNRGSGYSAEAGLKYFVLGALSSGLFLFGCALLCGTTGGLHLsyinl 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786386  87 --------TQLTHPLACLLLTSAIAIKLGLTPFHFWFPEVLQGSSLTTALLLSTVMKLPPTTILLitSHSLNPTFLTLTA 158
Cdd:MTH00196  82 vlnsgqsfSSVSVPIGYLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSILV--SIGLNVNILLIGG 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786386 159 IMSIAFGGWMGLNQTQTRKIMAFSSISHLGWMTIIITYNP----KLTLLTFYIYILMTTSIFLTMNKINALKlpTLLTSW 234
Cdd:MTH00196 160 LFSLFVGAIGALNQTKIKRLLAYSGIGHMGFVLWGIEIGSfesiQASLVYLFIYIIMSICVFSIILALNVYK--NLIIEF 237

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 257786386 235 T----KAPMLNTTLMLTLLSLAGLPPLTGFLPKWLIIQELIKQEMTATTTIISMLSLLGLFFYLRL 296
Cdd:MTH00196 238 SglsrRLPILAITLALTFLSIAGIPPLVGFLGKWLILLSGVVYQYYLIFLLAVFCSVIAGVYYVRI 303
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 10-298 1.33e-30

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 120.99  E-value: 1.33e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786386  10 TMSILLGTTITITSNHWMTAWAGLEINTLSILPLIS-KSHHPRAVEAATKYFLVQATASALVLFSCTINAHSTGQWDITQ 88
Cdd:COG1007  108 LLFATLGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYGISLLYGATGSLNLAG 187

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786386  89 LTHPL------------ACLLLTSAIAIKLGLTPFHFWFPEVLQGSSLTTALLLSTVMKL----PPTTILLITSHSLNPT 152
Cdd:COG1007  188 IAAALaagganspllllGLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIaafaALLRLLVEAFPGLAAD 267

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786386 153 F---LTLTAIMSIAFGGWMGLNQTQTRKIMAFSSISHLGWMTI-IITYNPK-LTLLTFY--IYILMTTSIFLTMNKI-NA 224
Cdd:COG1007  268 WqllLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLgLAAGTPLgVSAALFYllAYLFMNLGAFAVILLLsRK 347

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 257786386 225 LKLPTLLTSW----TKAPMLNTTLMLTLLSLAGLPPLTGFLPKWLIIQELIKQEMTATTTIISMLSLLGLFFYLRLAY 298
Cdd:COG1007  348 GGEAEEIEDLaglaRRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLRVVK 425
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
14-296 8.71e-26

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 107.21  E-value: 8.71e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786386  14 LLGTTITITSNHWMTAWAGLEINTLSILPLIS-KSHHPRAVEAATKYFLVQATASALVLFSC--------TIN----AHS 80
Cdd:PRK05777 113 LLGMMVMVSANDLLTLFLGLELLSLPLYALAAlRRDRRRSLEAAIKYFVLGALASGFLLYGMsllygatgSLSfagiAKA 192

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786386  81 TGQWDITQLTHPLACLLLTSAIAIKLGLTPFHFWFPEVLQGSSLTTALLLSTVMKL----PPTTILLITSHSLNPT---F 153
Cdd:PRK05777 193 LADGSGNSLLLLFGLVFLLVGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIaafaVLLRLLVVAFGGLSEDwqqV 272

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786386 154 LTLTAIMSIAFGGWMGLNQTQTRKIMAFSSISHLGWMTI---IITYNPKLTLLtFY--IYILMTTSIFLTmnkINALKLP 228
Cdd:PRK05777 273 LAIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLLVglaAGTAEGYSAVL-FYllAYLFMTLGAFGV---ISLLRRK 348

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 257786386 229 ----TLLTSWT----KAPMLNTTLMLTLLSLAGLPPLTGFLPKWLIIQELIKQEMTATTTIISMLSLLGLFFYLRL 296
Cdd:PRK05777 349 ggeaESISDFAglskRSPLLAAVMTIFMLSLAGIPPTAGFWGKFYVFEAAVEAGLWWLAVIGVLNSAIGAFYYLRV 424
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 23-268 1.13e-25

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 104.32  E-value: 1.13e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786386   23 SNHWMTAWAGLEINTLSILPLI-SKSHHPRAVEAATKYFLVQATASALVLFSCTINAHSTGQWDITQL-----------T 90
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELskaltgglnssG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786386   91 HPLACLLLTSAIAIKLGLTPFHFWFPEVLQGSSLT-TALLLSTVMKLPPttILLITSHSLNPT-------FLTLTAIMSI 162
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPvSALLAATLVKAGG--YGLIRRSLLYLPsspfiqqILLILAIISM 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786386  163 AFGGWMGLNQTQTRKIMAFSSISHLGWMTIII----TYNPKLTLLTFYIYILMTTSIFLTMNKINALKLPTLLTS----- 233
Cdd:pfam00361 159 LLGSLAALVQTDIKRLLAYSSISHMGYMLIALgagtIYGIQAAIFHLLTHGLFSAGLFLCAGSVIYRRVHTRNIRdyggl 238

                         250       260       270
                  ....*....|....*....|....*....|....*
gi 257786386  234 WTKAPMLNTTLMLTLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:pfam00361 239 AKTMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 13-297 5.09e-25

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 105.03  E-value: 5.09e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786386   13 ILLGTTITITSNHWMTAWAGLEINTLSILPLIS-KSHHPRAVEAATKYFLVQATASALVLFSCTINAHSTGQWDITQLTH 91
Cdd:TIGR01770 111 ALLGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLL 190

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786386   92 PL------------ACLLLTSAIAIKLGLTPFHFWFPEVLQGSSLTTALLLSTVMKLPPTTILL-------ITSHSLNPT 152
Cdd:TIGR01770 191 FLsngmlnisllllGIVLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFLrlflyilFGFSEAWQI 270

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786386  153 FLTLTAIMSIAFGGWMGLNQTQTRKIMAFSSISHLGWMTIIITYNPKLTL--LTFY--IYILMTTSIF---LTMNKIN-- 223
Cdd:TIGR01770 271 FLAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIkaVLFYifIYALMSLGAFgvlSLLRSYKde 350

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 257786386  224 -ALKLPTLLTSWTKAPMLNTTLMLTLLSLAGLPPLTGFLPKWLIIQELIKQEMTATTTIISMLSLLGLFFYLRLA 297
Cdd:TIGR01770 351 wIEYISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRVV 425
ND2 MTH00199
NADH dehydrogenase subunit 2; Provisional
 13-296 8.42e-25

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177245 [Multi-domain]  Cd Length: 460  Bit Score: 104.33  E-value: 8.42e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786386  13 ILLGTTITITSNHWMTAWAGLEINTLSILPLIS-KSHHPRAVEAATKYFLVQATASALVLFSCTINAHSTGQWDI----T 87
Cdd:MTH00199 106 VALGSLLLVSSINWLSIYLAIELQTLTLFILVAlKRDSAYSTEAGLKYFVLGAVSSGLFLFGCALLYGLTGETSIqginS 185

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786386  88 QLTHPLACLLLTSAIAIKLGLTPFHFWFPEVLQGSSLTTALLLSTVMKLPPTTILLITSHSLNptFLTLTAIMSIAFGGW 167
Cdd:MTH00199 186 ILTGDVGKILITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILVQIGPVTN--VVLICAVLSIIYGAI 263

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786386 168 MGLNQTQTRKIMAFSSISHLGWMTIIITYNP----KLTLLTFYIYILMTT---SIFLTMNKINALKLPTLLTSwTKAPML 240
Cdd:MTH00199 264 GALNQTKIKRLLAYSGIGHMGFILFGVAIGSfesiQASLIYMIIYVIMSIcsfSIILSLKLTKGLIVEVSGLS-RKNPVI 342

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 257786386 241 NTTLMLTLLSLAGLPPLTGFLPKWLIIQELIKQEMTATTTIISMLSLLGLFFYLRL 296
Cdd:MTH00199 343 ALTLALTFLSIAGIPPLAGFLSKWLILLSGVSSGYYLICIIAVLSSVIAGVYYVRV 398
ND2 MTH00198
NADH dehydrogenase subunit 2; Provisional
 15-296 5.51e-19

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214454 [Multi-domain]  Cd Length: 607  Bit Score: 87.99  E-value: 5.51e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786386  15 LGTTITITSNHWMTAWAGLEINTLSILPLISKSHHPRAV---------EAATKYFLVQATASALVLFSC----------- 74
Cdd:MTH00198 199 LGGLLLIESANWLTIYLALEFQTLALFILAGEGSQPGSHfpspgntppESGLKYWILGAMSSGFYLFGCalyfgftgneg 278

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786386  75 ---TINAHSTGQWDITQLTHPLACLLLTSAIAIKLGLTPFHFWFPEVLQGSSLTTALLLSTVMKLppTTILLITSHSLNP 151
Cdd:MTH00198 279 mlgTILSATLETTNIELRQGSLGYLFITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKF--TVYILLTSLVITS 356

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786386 152 TFLTLTAIMSIAFGGWMGLNQTQTRKIMAFSSISHLGWMTIII---TYNPKLTLLTFYIYILMTTSIFLTM--------- 219
Cdd:MTH00198 357 KLLLSVAIISLVVGAFGALNQTRIKRLLAYSGIGHIGFILIGVsagTYESLQASWTYAVTYLVSALASFTVictleefgt 436

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786386 220 ---------------NKINALKLPTLLTSwtKAPMLNTTLMLTLLSLAGLPPLTGFLPKWLIIQELIKQEMTATTTIISM 284
Cdd:MTH00198 437 rtptsrqrdgsfgnyNLVRRLVDLTILSR--GQPYIAFSLAIVFLSLAGIPPLLGFLGKWFILVGSIKIAFSSSLSIYYL 514

                        330
                 ....*....|....*....
gi 257786386 285 LSLLGL-------FFYLRL 296
Cdd:MTH00198 515 VALFAIictcisaFYYIRI 533
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 14-296 1.20e-18

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 86.35  E-value: 1.20e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786386  14 LLGTTITITSNHWMTAWAGLEINTLSILPLISKSHHPRAVEAATKYFLVQATASALVLFSCTINAHSTGQWDITQLTH-- 91
Cdd:COG0651  117 LAGMNGAFLTGDLFNLFVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYGATGTLNMADLAArl 196

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786386  92 --------PLACLLLTSAIAIKLGLTPFHFWFPEVL-QGSSLTTALLLSTVMKLPPTTILLI--------TSHSLNPTFL 154
Cdd:COG0651  197 aeldpgllLAAFALLLVGFGIKAALFPLHFWLPDAYpAAPSPVSALLSGLLTKVGVYAILRVltllfgadPALFLGTLLL 276

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786386 155 TLtAIMSIAFGGWMGLNQTQTRKIMAFSSISHLGWMTIIITYNPKLTLLTFYIYI----LMTTSIFLT------------ 218
Cdd:COG0651  277 VL-GLLTMLVGALGALAQRDLKRLLAYSSVSQIGYILLGLGLGTPLGLAGALFHLlnhaLAKALLFLAagaieratgtrd 355

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 257786386 219 MNKINALklptlltsWTKAPMLNTTLMLTLLSLAGLPPLTGFLPKWLIIQELIKQEMTATTTIISMLSLLGLFFYLRL 296
Cdd:COG0651  356 LDKLGGL--------GKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLAAVLLLSSLLTLAYFVRI 425
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-298 1.42e-13

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 71.45  E-value: 1.42e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786386  33 LEINTLSILPLISKSHHPRAVEAATKYFLVQATASALVLFSCTINAHSTGQWDITQLTHPL--------ACLLLTSAIAI 104
Cdd:PRK08375 135 LEIMSLSSYALVAMGGDRRALAAARKYLIVGLIGSTFLLIGVGLLYGVTGTLNMADLAGALaenptvvtAFGFVLLALAL 214

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786386 105 KLGLTPFHFWFPEVLQG-SSLTTALLLSTVMKLPPTTILLITSH------SLNPTFLTLT---AIMSIAFGGWMGLNQTQ 174
Cdd:PRK08375 215 KAAVFPLHTWLPRAYPAaPPVVTALLSGLVTKVAVYALIRIYFTvfggdfRFALGLGWLLavlALLSMLVGSLAALGQDD 294

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786386 175 TRKIMAFSSISHLGWMTIIITYNPKLTLL--TFYI--YILMTTSIFLT----MNKINALKLPTLLTSWTKAPMLNTTLML 246
Cdd:PRK08375 295 VKRVLAYSTVSQMGYILLGLALLTPLALAagLLHLlhHALMKGALFLAagaiEVTYGTRRLSELSGLGRRMPLTAAAFAV 374

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|..
gi 257786386 247 TLLSLAGLPPLTGFLPKWLIIQELIKQEMTATTTIISMLSLLGLFFYLRLAY 298
Cdd:PRK08375 375 ASLSLIGVPPTSGFVSKWYLVVGAVEAGQWLVLAVLLASSLLALLYFLRIWY 426
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 49-192 2.40e-10

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 61.25  E-value: 2.40e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786386  49 HPRAVEAATKYFLVQATASALVLFSCTINAHSTGQW--DITQLTH--------PLACLLLTSAIAIKLGLTPFHFWFPEV 118
Cdd:COG1008  156 GERRIYAAIKFFLYTLAGSLLMLVAILALYFLAGALtfDIAELAAaplpltaqLLLFLAFFIAFAVKVPMFPFHTWLPDA 235

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786386 119 LQGSSLTTALLLSTVMK-----------LPpttILLITSHSLNPTFLTLtAIMSIAFGGWMGLNQTQTRKIMAFSSISHL 187
Cdd:COG1008  236 HVEAPTAGSVLLAGVLLkmggygllrfaLP---LFPEASAYFAPLLAAL-GVIGIIYGALVALAQTDLKRLIAYSSVSHM 311


                 ....*
gi 257786386 188 GWMTI 192
Cdd:COG1008  312 GFVLL 316
ndhB CHL00049
NADH dehydrogenase subunit 2
 51-263 4.31e-10

NADH dehydrogenase subunit 2


Pssm-ID: 176990 [Multi-domain]  Cd Length: 494  Bit Score: 60.79  E-value: 4.31e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786386  51 RAVEAATKYFLVQATASALVLFSCT-INAHSTGQWDI---------TQLTHPLACLL----LTSAIAIKLGLTPFHFWFP 116
Cdd:CHL00049 159 RSNEATMKYLLMGGASSSILVYGFSwLYGLSGGEIELqeivnglinTQMYNSPGISIalifITVGIGFKLSLAPFHQWTP 238

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786386 117 EVLQGSSLTTALLLSTVMKLP----PTTILLITSHSLNP---TFLTLTAIMSIAFGGWMGLNQTQTRKIMAFSSISHLGW 189
Cdd:CHL00049 239 DVYEGSPTPVVAFLSVTSKVAasalATRIFDIPFYFSSNewhLLLEILAILSMILGNLIAITQTSMKRMLAYSSIGQIGY 318

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786386 190 MTI-IITYNPKLTLLTFYIYILmttsIFLTMNkINALKLPTLLTS-------------WTKAPMLNTTLMLTLLSLAGLP 255
Cdd:CHL00049 319 VIIgIIVGDSNDGYASMITYML----FYIFMN-LGTFACIVLFGLrtgtdnirdyaglYTKDPFLALSLALCLLSLGGIP 393


                 ....*...
gi 257786386 256 PLTGFLPK 263
Cdd:CHL00049 394 PLAGFFGK 401
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-319 9.99e-10

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 59.73  E-value: 9.99e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786386  33 LEINTLSILPLIS-KSHHPRAVEAATKYFLVQATASALVLFSCTINAHSTGQWDITQLTHPL----------ACLLLTSA 101
Cdd:PRK08376 150 LEIMSIASYALVAfRNDTWEAIEAGIKYMFVGSLASSMVLLGIALLYGQYGTLNMAYLAVKMsenptvvakiALALFIAG 229

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786386 102 IAIKLGLTPFHFWFPEVLQG--SSLTTALLLSTVMKLPPTTILLIT--SHSLNPTFL----TLTAIMSIAFGGWMGLNQT 173
Cdd:PRK08376 230 LAMKSGAVPVHMWLPDAYPAapSSISAMLLVIKQAGLYALARVLFSiyGPAINLATVgwviIILGCLTMFVGVAMAVVQK 309

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786386 174 QTRKIMAFSSISHLGWMTI-----IITYNPklTLLTFYIYILMTTSIFLTMNKInALKLPTLLTSWT------------- 235
Cdd:PRK08376 310 DVKRLLAYHSVSQIGYMLLglgvgLAALGD--PAMASYGEIALAGGIYHIVNHA-LYKALLFLTAGAviyetgtrnlnel 386

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786386 236 -----KAPMLNTTLMLTLLSLAGLPPLTGFLPKWLIIQE--LIKQEMTATTTIISMLSLLGlffYLRLAYcSTITLPPSP 308
Cdd:PRK08376 387 gglarTMPKTTIAFLIGAAAIVGLPPFNGFASKWLIYESsaLFNPILGVIAMIGSVLTLAS---FVKVFH-TAFFGPPSE 462

                        330
                 ....*....|.
gi 257786386 309 PNKMKQWPPKT 319
Cdd:PRK08376 463 KVMNVKEPPKP 473
PRK02504 PRK02504
NAD(P)H-quinone oxidoreductase subunit N;
50-263 5.02e-08

NAD(P)H-quinone oxidoreductase subunit N;


Pssm-ID: 235044 [Multi-domain]  Cd Length: 513  Bit Score: 54.29  E-value: 5.02e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786386  50 PRAVEAATKYFLVQATASALVLF-----------SCTINAHSTGQWDITQLTHPLACLLLTSAIAIKLGLTPFHFWFPEV 118
Cdd:PRK02504 157 PRSNEAALKYLLIGAASSAIFLYgssllyglsggSTQLSAIALALITSPSLGLALALVFVIAGIAFKISAVPFHQWTPDV 236

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786386 119 LQGSSLTTALLLSTVMKLPPTTI---LLITSHSLNPT----FLTLTAIMSIAFGGWMGLNQTQTRKIMAFSSISHLGWMT 191
Cdd:PRK02504 237 YEGSPTPVVAFLSVGSKAAGFALairLLVTAFPSFDEqwklLFTALAILSMVLGNVVALAQTSMKRMLAYSSIGQAGFVM 316

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786386 192 IIITYNPKLTLLTFYIYILmttsIFLTMN--KINALKLPTLLTS----------WTKAPMLNTTLMLTLLSLAGLPPLTG 259
Cdd:PRK02504 317 IGLVAGTEAGYASMVFYLL----AYLFMNlgAFACVILFSLRTGtdqisdyaglYQKDPLLTLGLSLCLLSLGGIPPLAG 392


                 ....
gi 257786386 260 FLPK 263
Cdd:PRK02504 393 FFGK 396
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 50-309 5.22e-08

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 54.18  E-value: 5.22e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786386   50 PRAVEAATKYFLVQATASALVLFSCTI----NAHSTGQWDITQLTHPLAC-----LLLTSAIAIKLGLTPFHFWFPEV-L 119
Cdd:TIGR01972 152 PNRIYAAMKFFLYTLAGSLLMLLAILGlyflGGGTFDLLELLNLPLPFGVqtwlfLAFFIAFAVKVPLFPLHTWLPDAhV 231

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786386  120 QGSSLTTALLLSTVMKLPPTTILLI-------TSHSLNPTFLTLtAIMSIAFGGWMGLNQTQTRKIMAFSSISHLGWMTI 192
Cdd:TIGR01972 232 EAPTAGSVILAGVLLKMGTYGFLRFnlplfpdASLYFAPVLAAL-GVIAIIYGALIALAQTDIKRLIAYSSISHMGFVLL 310

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786386  193 IITYNPKLTLLTFYIYI----LMTTSIFL----TMNKINALKLPTLLTSWTKAPMLNTTLMLTLLSLAGLPPLTGFLPKW 264
Cdd:TIGR01972 311 GIFSFNELGISGAVFQMishgLITAALFLlvgvLYERAHTRDIAKYGGLANKMPVLAAFFMLFAMASLGLPGTSGFVGEF 390

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*...
gi 257786386  265 LIIQELIKqemtaTTTIISMLSLLGLFF---YLRLAYCSTITLPPSPP 309
Cdd:TIGR01972 391 LILLGSFK-----VNPVVAFLAALGIVLaaaYMLTLYKRVFFGELSNP 433
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-296 1.16e-07

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 53.20  E-value: 1.16e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786386  33 LEINTLSILPLISKSHHPRAVEAATKYFLVQATASALVLFSCTINAHSTGQW---DITQLTHPL--------ACLLLTSA 101
Cdd:PRK12662 139 LEISSISSYVLVAMGRDKKALVAAFEYLIIGTIGATFYLIGIGFLYAITGTLnmgDMFLIIQDLptnraiqiGVLFIMVG 218

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786386 102 IAIKLGLTPFHFWFPEVLQGS-SLTTALLLSTVMKLPPTTI-----------LLITSHSLNPTFLTLtAIMSIAFGGWMG 169
Cdd:PRK12662 219 LFIKAALFPFHKWLIQAYSEApSFISVFFSGTSTKVMIYLIirivydvfkanFVFTTLPFNNVFMIL-AALAIVFGSVLA 297

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786386 170 LNQTQTRKIMAFSSISHLGWMTIIITYNPKLTLLTFYIYI----LMTTSIFLTMNKI----NALKLPTLLTSWTKAPMLN 241
Cdd:PRK12662 298 ILSKDIKRIFAYSSISHIGYIILAVSLNTYYGLAAAVAYIvnhsIVKSALFMVSGSIsyhfGTTKLEDCLNLWKSMPKIT 377

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 257786386 242 TTLMLTLLSLAGLPPLTGFLPKWLIIQELIKQEMTATTTIISMLSLLGLFFYLRL 296
Cdd:PRK12662 378 LAFVLLSLSLIGMPPTSGFVAKWYILDAFIKSNAWIGLVVLLVGSGLSVIYVWKI 432
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 23-298 3.23e-07

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 51.92  E-value: 3.23e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786386  23 SNHWMTAWAGLEINTLSILPLISKSHHpRAVEAATKYFLVQATASALVLFSCTINAHSTGQWDIT-------QLTHP--- 92
Cdd:PRK08668 117 ANDLLTLYIFWEIMTFSSFMMVPMGKK-ESRKASLKYFVLSAIGAYAMLYAIFLIYAKTGTFDFAdisqgliNDTSTgfa 195

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786386  93 -LACLLLTSAIAIKLGLTPFHFWFPE-----------VLQGS-SLTTALLLSTVMKLPPTTILLIT-----SHSLNPTFL 154
Cdd:PRK08668 196 lIVFLFLLAFGVAKAGIFPLHVWAPDayseapqsfsaVLSGQlSKLGAYGFLLVLYVLPGTKLFSEfgtyrGVPLFNYIL 275

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786386 155 TLTAIMSIAFGGWMGLNQTQTRKIMAFSSISHLGWMTIIITYNPKLTLL--TFYI--YILMTTSIFLTmnkINALKLPTL 230
Cdd:PRK08668 276 AWLGNISIIVGTLMAILQEDIKKLIAYSSVANGGYILVGLGLGTSLGFAggLFHVfnHALFKGLFFLI---FAAVIYRTG 352

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 257786386 231 LTSWT-------KAPMLNTTLMLTLLSLAGLPPLTGFLPKWLIIQELIKQEMTATTTIISMLSLLGLFFYLRLAY 298
Cdd:PRK08668 353 TTKISemgglieKMPFTFAMYLVAIISLAGIPPMSGFASKWLIFEALISKGMPITAFMAFFGSIGSFLYVFRPLA 427
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
 13-210 4.01e-07

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 51.29  E-value: 4.01e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786386  13 ILLGTTITITSNHWMTAWAGLEINTLSILPLISKSHHPRAVEAATKYFLVQATA------SALVLFSCTINAHSTGQWDI 86
Cdd:PRK08676 111 LLSVITFAFFSDNLALFWIFAELTTVFSAMLIAILSARENIDAALKYIFIASTAmifafiGLIFLFSLTRQALGTGTLNW 190

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786386  87 TQLTHP----------LACLLLTSAIAIKLGLTPFHFWFPEV-LQGSSLTTALLLSTVMKLPPTTILLITS----HSLNP 151
Cdd:PRK08676 191 TELAAHasllspsvlgASFLFIFIGFLAKSGLVPFHTWLPAAyAKAPSVVSALLSGTVLNIGIYGILRLSAllrqSGAAE 270

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 257786386 152 TF---LTLTAIMSIAFGGWMGLNQTQTRKIMAFSSISHLGWMTIIITYNPKLTLLTFYIYIL 210
Cdd:PRK08676 271 QFsnvLIGLGIFSIAVAAFSMLSQRNLKKLIAFSSIEHMGLMLLGIGIGTPLALFWMLFHML 332
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 50-194 3.07e-06

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 48.66  E-value: 3.07e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786386  50 PRAVEAATKYFLVQATASALVLFSC----TINAHSTGQWDITQLTHP-----------LACLLltsAIAIKLGLTPFHFW 114
Cdd:PRK05846 157 KNRIYAATKFFLYTLLGSLLMLVAIiylvVVYYNATGTFDIADLLNLplppgvqywlfLAFFI---AFAVKMPMFPLHTW 233

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786386 115 FPEVLQ-----GSSLTTALLLST--------VMKLPPTTillitSHSLNPTFLTLtAIMSIAFGGWMGLNQTQTRKIMAF 181
Cdd:PRK05846 234 LPDAHVqaptaGSVLLAGILLKMgaygllrfSLPLFPDA-----SHEFAPIIITL-GVIAIIYGALVALAQTDIKKLIAY 307

                        170
                 ....*....|...
gi 257786386 182 SSISHLGWMTIII 194
Cdd:PRK05846 308 SSISHMGFVTLGI 320
PRK06277 PRK06277
energy conserving hydrogenase EhbF;
34-308 1.57e-05

energy conserving hydrogenase EhbF;


Pssm-ID: 235767 [Multi-domain]  Cd Length: 478  Bit Score: 46.56  E-value: 1.57e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786386  34 EINTLSILPLISKSHHPRAVEAATKYFLVQATASALVLFSCTINAHSTGQWDITQLTHPL-----------ACLLLTSAI 102
Cdd:PRK06277 130 EIAAIVQVGLVIASGTEEAYKAALKYMILGNVAGSILLLGIGFLLASTGTLNITDIHNALlvnptspviygGLLLLIFGL 209

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786386 103 AIKLGLTPFHFWFPEVLQGSSLTTALLLSTVMKLPPTTILLIT-----SHSLNPTF---LTLTAIMSIAFGGWMGLNQTQ 174
Cdd:PRK06277 210 LYGSGLPPFHTIKSDIYAKAKPFGSALLQTFSKFVLVALMLVIfklfgGLSYFPSAqgvLIALSVLAMVFGVVMALLQTD 289

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786386 175 TRKIMAFSSISHLGWMTIIITYNPKLT----LLTFYIYILMTTSIFL------TMNKINAL-KLPTLLTSwtkAPMLNTT 243
Cdd:PRK06277 290 YKRLLAYHAISQGGYVAAGLALGTPLGivagIFHAINHVIYKSALFLgagivsYRTKTSNLrKLGGLLPV---MPVVAFM 366

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 257786386 244 LMLTLLSLAGLPPLTGFLPKWLIIQELIKQEMTATTTIISMLSLLGLFFYLRLAYcsTITLPPSP 308
Cdd:PRK06277 367 VLCAKLAISGVPPFNGFQSKLMLAQAAMQANMPELAIIMIIVSIGTFVSMMKAFY--LIYLKPKP 429
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
 20-192 7.36e-05

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 44.54  E-value: 7.36e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786386  20 TITSNHWMTAWAGLEINTLSILPLISKSHHPRAVEAATKYFLVQATASALVLFScTI----NAHstgqwdiTQLTHPLAC 95
Cdd:PRK06458 124 ALTSNNLGLMWVAIEATTLSSALLVGIYRTRASLEAAWKYIIICSVGVAFALFG-TIlvyaNAA-------TVMGDGEMA 195

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786386  96 LLLTSAIAI----------------------KLGLTPFHFWFPE-----------VLQGSSLTTALLlsTVMKLPPTTIL 142
Cdd:PRK06458 196 ILWTELLKHaslldptlmklafvflligfgtKVGLFPMHAWLPDahseapspvsaLLSGVLLNVALY--AVLRYYILIDA 273

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|
gi 257786386 143 LITSHSLNPTFLTLtAIMSIAFGGWMGLNQTQTRKIMAFSSISHLGWMTI 192
Cdd:PRK06458 274 AIGSDFPGRLLLIF-GLLSVLVAAFFLLRQRDIKRLFAYSSIEHMGLIAF 322
PRK08168 PRK08168
NADH-quinone oxidoreductase subunit L;
10-136 1.77e-04

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236171 [Multi-domain]  Cd Length: 516  Bit Score: 43.15  E-value: 1.77e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786386  10 TMSILLGTTITITSNHW---MTAWA--GLEINTLsilpLISKSHHPRAVEAATKYFLVQATASALVLFSCTINAHSTGQW 84
Cdd:PRK08168 106 LAGVLAAVHLLVLSDHLlvlIAAWAaiSLALHRL----LCFYPDRPFARLAAHKKFIADRLAELLLLAAAALAYLEVGSL 181

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 257786386  85 DITQL---------THPL--ACLLLTSAIAIKLGLTPFHFWFPEVLQGSSLTTALLLSTVMKL 136
Cdd:PRK08168 182 SLSALwahlaaqgaSPSLqaAALLLVLAVILKTAQLPVHGWLIQVMEAPTPVSALLHAGVVNL 244
PRK12650 PRK12650
DUF4040 family protein;
79-263 1.89e-04

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 43.49  E-value: 1.89e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786386  79 HSTGQWDITQLTHPLACLLLTSAIAiKLGLTPFHFWFPEVLQGSSLTTALL---------------LSTVMKLPPT-TIL 142
Cdd:PRK12650 196 HSDVWAEKPGLTTVVAVLIAVAAFT-KSAQFPFHFWLPEAMAAITPVSAFLhaaavvkagiylllrFSPVFHDVAVwNWL 274

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786386 143 LITSHslnptflTLTAIMSIAFGgwmgLNQTQTRKIMAFSSISHLGWMTIIITYNPKLTLLTFYIYI----LMTTSIFLT 218
Cdd:PRK12650 275 LIIVG-------MITALMGAVFA----VQKTDLKKLTAYSTVSQLGWIVATIGVGTPFALTAAVVHTlahaLFKSSLFML 343

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*....
gi 257786386 219 MNKIN----ALKLPTLLTSWTKAPMLNTTLMLTLLSLAGLPPLTGFLPK 263
Cdd:PRK12650 344 IGVVDhqagTRDIRRLGSLWRRMPFTFVSVTIAALSMAAVPPLFGFVSK 392
PRK07234 PRK07234
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-189 2.28e-04

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235978 [Multi-domain]  Cd Length: 470  Bit Score: 42.63  E-value: 2.28e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786386  33 LEINTLSILPLISKSHHPRAVEAATKYFLVQATASALVLFSCTINAHSTGQWDITQLTH--PLACLLLTSAIAIKLGLTP 110
Cdd:PRK07234 123 LEVLSIATFLLVAYPRTDRAIWVGLRYLFYSNVAMLFYLIGAVLVYQANGTFAFSGLATadPEAFALIALGLLVKGGIFV 202

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786386 111 FHFWFPEVLQGSSLTTALLLS-TVMK---LPPTTILLITSHSLNPtfLTLTAIMSIAFGGWMGLNQTQTRKIMAFSSISH 186
Cdd:PRK07234 203 SGLWLPLTHSEAEPPVSALLSgVVVKagvFPLVRCALDVPGLDLI--VRIFGVGTALLGVLFALLEKDLKRMLAFSTISQ 280


                 ...
gi 257786386 187 LGW 189
Cdd:PRK07234 281 LGF 283
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 48-271 2.81e-04

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 42.83  E-value: 2.81e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786386  48 HHPRAVEAATKYFLVQATASALVLFSCTINAHSTGQWDITQLTH-----------PLACLLLTSAIAIKLGLTPFHFWFP 116
Cdd:COG1009  156 EKPSARRAARKAFLVTRVGDLGLLLGILLLGAIAGTLNFSELLAaaptilsspllTLILLLLLLGAFGKSAQFPLHFWLP 235

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786386 117 EVLQGSSLTTALLLSTVMKlpptTI---LLITSH---SLNPTFLTLTAIMSIA---FGGWMGLNQTQTRKIMAFSSISHL 187
Cdd:COG1009  236 DAMEGPTPVSALLHAATMV----KAgvyLLARLSplfALSPVWLTVVAIIGAItalFAALIALAQTDIKRVLAYSTVSQL 311

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786386 188 GWMTIIITynpkLTLLTFYIYILMTTSIF------------LTMNKINALKLPTLltsWTKAPMLNTTLMLTLLSLAGLP 255
Cdd:COG1009  312 GYMFLALG----VGAYVAALFHLLTHAFFkallflgagsviHATGTRDIRKMGGL---RKKMPITAITFLIGALSLAGIP 384

                        250
                 ....*....|....*.
gi 257786386 256 PLTGFLPKWLIIQELI 271
Cdd:COG1009  385 PFAGFFSKEAILEAAL 400
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
 79-263 3.47e-04

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 42.60  E-value: 3.47e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786386  79 HSTGQWDITQL-THPLACLLLTSAIAI-------KLGLTPFHFWFPEVLQGSSLTTALLLSTVM---------KLPPTti 141
Cdd:PRK12644 182 QAAGTYRLSELlADPPTGPAVSVAVVLilvgalsKSAIVPFHFWLPGAMAAPTPVSAYLHAAAMvkagiylvaRLAPG-- 259

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786386 142 lLITSHSLNPTFLTLtAIMSIAFGGWMGLNQTQTRKIMAFSSISHLGWMTIIITYNPK------LTLLTfyIYILMTTSI 215
Cdd:PRK12644 260 -FADVPVWRPTVLVL-GLATMLLGGWRALRQHDLKLILAYGTVSQLGFLTVLVGIGTRdaalagLAMLL--AHALFKAAL 335

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 257786386 216 FLTMNKINAL-------KLPTLltsWTKAPMLNTTLMLTLLSLAGLPPLTGFLPK 263
Cdd:PRK12644 336 FLVVGIIDHStgtrdirKLSGL---GRRQPVLAVVAALAAASMAGLPPLLGFVAK 387
PRK12561 PRK12561
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 55-194 5.22e-04

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 237137 [Multi-domain]  Cd Length: 504  Bit Score: 41.56  E-value: 5.22e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786386  55 AATKYFLVQATASALVLFSCTINAHSTGQ--WDITQLTH---PLACLLLTSA---IA--IKLGLTPFHFWFPEVLQGSSL 124
Cdd:PRK12561 138 AATKFILYTALASIFILVAGLALALSGDTftFDLAELGAksyPLALELLLYAgflIAfgVKLPIFPLHTWLPDAHGEASA 217

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 257786386 125 TTALLLSTVM-KLPPTTI------LLITSHSLNPTFLTLTAIMSIAFGGWMGLNQTQTRKIMAFSSISHLGWMTIII 194
Cdd:PRK12561 218 PVSMILAGVLlKMGGYALirfnvqMLPDAHVYFAPALAILGVVNIIYGALNAFAQDNVKRRLAYSSVSHMGFVLLGI 294
ND5 MTH00032
NADH dehydrogenase subunit 5; Provisional
 92-268 9.95e-04

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214407 [Multi-domain]  Cd Length: 669  Bit Score: 41.10  E-value: 9.95e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786386  92 PLACLLLTSAI--AIKLGLtpfHFWFPEVLQGSSLTTALLLSTVMkLPPTTILLITSHSL------NPTFLTLTAIMSIA 163
Cdd:MTH00032 226 IIGILLLIGCIgkSAQLGL---HTWLPDAMEGPTPVSALIHAATM-VTAGVFLMIRSFPLfekaplTLLIITIFGALTAF 301

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786386 164 FGGWMGLNQTQTRKIMAFSSISHLGWMTIIITYNPKLTLLTFYI--YILMTTSIFL---------TMNKINALKLPTLLT 232
Cdd:MTH00032 302 FAATVGLVQNDLKKVIAYSTCSQLGYMVLIIGIEGSHNVGLFHLvnHAFFKALLFLsagsvihstTVDEQDMRKMGGLIH 381

                        170       180       190
                 ....*....|....*....|....*....|....*.
gi 257786386 233 SwtkAPMLNTTLMLTLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:MTH00032 382 S---IPFTYTMMLIGSFSIMGLPYLTGFYSKDLILE 414
PRK06473 PRK06473
NADH-quinone oxidoreductase subunit M;
55-203 1.12e-03

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 235810 [Multi-domain]  Cd Length: 500  Bit Score: 40.84  E-value: 1.12e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786386  55 AATKYFLVQATASALVL--FSCTINAHSTGQWDITQL---THPLAC-LLLTSAI----AIKLGLTPFHFWFPEVLQGSSL 124
Cdd:PRK06473 158 AATKFLLYTAISGILILvsFLGLVWLSGASSFDYEPLrshTLPLSTqLLLLAPIlvgfGIKIPLVPFHTWLPDAHVEAST 237

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786386 125 TTALLLSTVMKLPPTTILLITSHSLNPT-------FLTLTAIMSIAFGGWMGLNQTQTRKIMAFSSISHLGWMTIIITYN 197
Cdd:PRK06473 238 PVSVLLAGVLLKLGTYGLLRFGVGLFPEawvylapWLATWAVVSVLYGASCAIAQKDMKKMVAYSSIGHMGYILLAAAAA 317


                 ....*.
gi 257786386 198 PKLTLL 203
Cdd:PRK06473 318 TPLSIL 323
PRK12647 PRK12647
putative monovalent cation/H+ antiporter subunit A; Reviewed
 110-266 1.46e-03

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237156 [Multi-domain]  Cd Length: 761  Bit Score: 40.29  E-value: 1.46e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786386 110 PFHFWFPEVLQGSSLTTALLLSTVMKLPPTTILLITSHSLNPT-----FLTLTAIMSIAFGGWMGLNQTQTRKIMAFSSI 184
Cdd:PRK12647 213 PFHFWLPNAMEAPTPVSAYLHSATMVKAGIYLLARLNPVLGGTplwqtILPLFGGLTMLTGALLAVRQTDLKLILAYSTV 292

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786386 185 SHLGWMTIIITYNPKLTLLTFYIYI----LMTTSIFLTMNKIN-------ALKLPTLltsWTKAPMLNTTLMLTLLSLAG 253
Cdd:PRK12647 293 SALGTLVMLLGLGSELAIKAAVLFLvahsLYKGALFMVAGIIDhetgtrdITKLGGL---RRAMPITAAAALLAALSMAG 369

                        170
                 ....*....|...
gi 257786386 254 LPPLTGFLPKWLI 266
Cdd:PRK12647 370 LPPLFGFLAKELI 382
PRK12649 PRK12649
putative monovalent cation/H+ antiporter subunit A; Reviewed
 48-196 1.60e-03

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 183649 [Multi-domain]  Cd Length: 789  Bit Score: 40.20  E-value: 1.60e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786386  48 HHPRAVEAATKYFLVQATASALVLFSCTINAHSTGQWDITQL-----------THPL---ACLLLTSAIAIKLGLTPFHF 113
Cdd:PRK12649 156 HRPESVYGATKSLLITAGGGLFMFAGFLLLHVITGTYDIATIlqdselienikGHPLfliTLILIFIGAAAKSAQGPFYI 235

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786386 114 WFPEVLQGSSLTTALLLSTVMkLPPTTILLITSH---SLNPTFLTL---TAIMSIAFGGWMGLNQTQTRKIMAFSSISHL 187
Cdd:PRK12649 236 WLPNAMEAPTPVSAFLHSATM-VKAGVYLVARIHpifSGTEAWFILvsgTGMITMVLAGFLAFRQTDIKAILAYSTISQL 314


                 ....*....
gi 257786386 188 GWMTIIITY 196
Cdd:PRK12649 315 AYLMTMYGY 323
ND4 MTH00226
NADH dehydrogenase subunit 4; Provisional
 101-219 2.43e-03

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214466 [Multi-domain]  Cd Length: 505  Bit Score: 39.52  E-value: 2.43e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786386 101 AIAIKLGLTPFHFWFPEV-LQGSSLTTALLLSTVMKLP-------PTTILLITSHSLNPTFLTLtAIMSIAFGGWMGLNQ 172
Cdd:MTH00226 239 AMAVKIPIFPFHIWLPKAhVEAPVAGSVLLAGILLKLGgyglvrlSWPILPLGAQNLAPAVIAM-GIVGIVYGSFATCRQ 317

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*..
gi 257786386 173 TQTRKIMAFSSISHLGWMTIiitynpklTLLTFYIyILMTTSIFLTM 219
Cdd:MTH00226 318 IDVKRLVAYSSVAHMGLVSI--------TLVTHDI-IGLTGSIFIML 355
PRK12663 PRK12663
Na+/H+ antiporter subunit D;
34-315 2.96e-03

Na+/H+ antiporter subunit D;


Pssm-ID: 237163 [Multi-domain]  Cd Length: 497  Bit Score: 39.16  E-value: 2.96e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786386  34 EINTLSILPLISKSHHPRAVEAATKYFLVQATASALVLFSC--------TIN-AHSTGQWDITQLTHPLACL--LLTSAI 102
Cdd:PRK12663 138 EVMLIASFVLITLGQEREQLRGAIKYVVLNLIGSWLFLLGIgllygtfgTLNmAHIAMRLNDMGDTATLTTIalLFLLAF 217

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786386 103 AIKLGLTPFhFWFPEVLQGSSLTTALLLSTVMK-------LPPTTILLITSHSLNPTFLTLTAIMSIAFGGWMGLNQTQT 175
Cdd:PRK12663 218 GMKAALFPF-MWLPAAYHTPNTEVAALFAALLTkvgiyalIRVFTLLFPQERELLHPLLATMAAITMVIGALGALAYKDI 296

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786386 176 RKIMAFSSISHLGWMTIIITYNPKLTL--LTFYIY--ILMTTSIFLTMNKINAL----KLPTLLTSWTKAPMLNTTLMLT 247
Cdd:PRK12663 297 RRIAGYQVISSIGFILLGLALGTPAGIngAIFYLVhdMVVKTALFLIAGSLVRLtgyrSLQYLGGLYRKEPLFGALFLIL 376

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 257786386 248 LLSLAGLPPLTGFLPKWLIIQELIKQE---MTATTTIISMLSLLGLFFYLRLAYCSTITLPPSPPNKMKQW 315
Cdd:PRK12663 377 IFAIGGLPPFSGFWGKVLLVQGALDNGayiLLALMLITSLITMYSLFRIFFLAYWGDKDGEEVNFKPIPLY 447
PRK12665 PRK12665
putative monovalent cation/H+ antiporter subunit D; Reviewed
 50-268 3.11e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237165 [Multi-domain]  Cd Length: 521  Bit Score: 39.18  E-value: 3.11e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786386  50 PRAVEAATKYFLVQATASALVLFSCTINAHSTGQWDITQL----------THPLACLLLTSAIAIKLGLTPFHFWFPEVL 119
Cdd:PRK12665 157 AARVRAGVTYVMVSMVSSLLFLIGIALVYAATGTLNMADLavrldelpsgTRTALFAVLLVAFGIKAAVFPLSFWLPDSY 236

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786386 120 -QGSSLTTAL---LLSTV--MKLPPTTILLITSHSLNpTFLTLTAIMSIAFGGWMGLNQTQTRKIMAFSSISHLGWMTII 193
Cdd:PRK12665 237 pTAPAPVTAVfagLLTKVgvYAIIRTHTLLFPGGGLD-TLLMVVALLTMVVGILGAIAQSDIKRLLSFTLVSHIGYMVFG 315

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786386 194 ITYNPKLTL--LTFYI--YILMTTSIFLTMNKI-------NALKLPTLLTSwtkAPMLNTTLMLTLLSLAGLPPLTGFLP 262
Cdd:PRK12665 316 IALSTVAGLsgAIYYVahHITVQTTLFLVVGLIerqagssSLRRLGGLAKA---SPLLAVLFFVPALNLGGIPPFSGFIG 392


                 ....*.
gi 257786386 263 KWLIIQ 268
Cdd:PRK12665 393 KVALLE 398
PRK06589 PRK06589
putative monovalent cation/H+ antiporter subunit D; Reviewed
 11-289 4.46e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235835 [Multi-domain]  Cd Length: 489  Bit Score: 38.64  E-value: 4.46e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786386  11 MSILLGTTITITSNhWMTAWAGLEINTLSILPLISKSHHPRAVEAATKYFLVqATASALVLF--SCTINAHSTGQWD--- 85
Cdd:PRK06589 124 LTILIGVLIALSSD-LFTMFVCYELLTISTAFLIGHTRNNISLSGGYKYLKI-LMISALLLFlpAVILIYTKTGNLDfvs 201

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786386  86 --ITQLTHPLACLLLTSAIAIKLGLTPFHFWFPEVLQGSSLTTALLLSTVM----KLPPTTILLITSHSLNPT------- 152
Cdd:PRK06589 202 ggLFSKNQSIILLLMFIYGIAKTAIFPVHSWLPAAMVAHYPVSALLHAVIVvktgLFCIYKILLYIFGLSYLQrifaefn 281

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786386 153 FLTLTAIMSIAFGGWMGLNQTQTRKIMAFSSISHLGW--MTIIITYNPKLTLLTFYI--YILMTTSIFLTMNKINALK-- 226
Cdd:PRK06589 282 WLIFIPIVSIFYSSLKALKTDNIKKILAYSTISQLSLalLSAFILTPKALGAAILHLvsHSFAKICLFYSMGSIYSLKke 361

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 257786386 227 --LPTLLTSWTKAPMLNTTLMLTLLSLAGLPPLTGFLPKWLIIQELIKQEMTaTTTIISMLSLLG 289
Cdd:PRK06589 362 dqVDKLHGTSKSFPLISFIISISSLSLIGIPIFSGFISKFLILLAASEQNQP-WLSIIVMLVVIA 425
PRK12668 PRK12668
Na(+)/H(+) antiporter subunit D;
50-190 4.94e-03

Na(+)/H(+) antiporter subunit D;


Pssm-ID: 237168 [Multi-domain]  Cd Length: 581  Bit Score: 38.72  E-value: 4.94e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786386  50 PRAVEAATKYFLVQATASALVLFSCTINAHSTGQWDITQL--THPLACLLLTSAIAIKLGLTPFHFWFPEVLQGSSLTTA 127
Cdd:PRK12668 139 KAAVRAGFRYLLVHVLGGVLLLAGILLHYAETGSFAFGAIagLGGTAAWLILIGFGVNAAFPPLHAWLPDAYPEATVTGS 218

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 257786386 128 LLLS------TVMKLP---PTTILLItshslnptflTLTAIMSIaFGGWMGLNQTQTRKIMAFSSISHLGWM 190
Cdd:PRK12668 219 VFLSafttktAVYALArafPGTELLI----------YIGAAMAV-YGVFFALLENDLRRLLSYHIVSQVGYM 279
ND5 MTH00020
NADH dehydrogenase subunit 5; Reviewed
 93-307 5.16e-03

NADH dehydrogenase subunit 5; Reviewed


Pssm-ID: 214400 [Multi-domain]  Cd Length: 610  Bit Score: 38.52  E-value: 5.16e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786386  93 LACLLLTSAIAIKLGLTPFHFWFPEVLQGSSLTTALLLSTVMkLPPTTILLITSHSL---NPTFLTLTAI---MSIAFGG 166
Cdd:MTH00020 211 LICLFLFIGAVGKSAQLGLHTWLPDAMEGPTPVSALIHAATM-VTAGVFLLIRSSPLfeqAPLALIIVTIvgsLTVFFAA 289

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257786386 167 WMGLNQTQTRKIMAFSSISHLGWMTIIITynpkltlLTFY---IYILMTTSIFLTM------NKINAL-------KLPTL 230
Cdd:MTH00020 290 TVGLVQNDLKKVIAYSTCSQLGYMVVACG-------LSHYsisLFHLMNHAFFKALlflsagSVIHALsdeqdmrKMGGL 362

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 257786386 231 LTSwtkAPMLNTTLMLTLLSLAGLPPLTGFLPKWLIIQELIKQEMTATTTIISMLS-LLGLFFYLRLAYCSTITLPPS 307
Cdd:MTH00020 363 ISF---LPLTYIFFLIGSLSLMGFPYLTGFYSKDLILELAFGQYYLIFAYWLGCFSaLLTAFYSIRLIYLTFLSNTNL 437
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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