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Conserved domains on  [gi|257449347|gb|ACV53645|]
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PetN1, partial (chloroplast) [Stephanomeria virgata subsp. virgata]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PetN super family cl27240
PetN; PetN is a small hydrophobic protein, crucial for cytochrome b6-f complex assembly and/or ...
 1-24 2.38e-04

PetN; PetN is a small hydrophobic protein, crucial for cytochrome b6-f complex assembly and/or stability.


The actual alignment was detected with superfamily member CHL00009:

Pssm-ID: 421478  Cd Length: 29  Bit Score: 32.37  E-value: 2.38e-04
                        10        20
                ....*....|....*....|....
gi 257449347  1 LAWAALMVVFTFSLSLVVWGRSGL 24
Cdd:CHL00009  6 LAWAALMVVFTFSLSLVVWGRSGL 29
 
Name Accession Description Interval E-value
petN CHL00009
cytochrome b6/f complex subunit VIII
 1-24 2.38e-04

cytochrome b6/f complex subunit VIII


Pssm-ID: 176952  Cd Length: 29  Bit Score: 32.37  E-value: 2.38e-04
                        10        20
                ....*....|....*....|....
gi 257449347  1 LAWAALMVVFTFSLSLVVWGRSGL 24
Cdd:CHL00009  6 LAWAALMVVFTFSLSLVVWGRSGL 29
PetN pfam03742
PetN; PetN is a small hydrophobic protein, crucial for cytochrome b6-f complex assembly and/or ...
 1-24 1.81e-03

PetN; PetN is a small hydrophobic protein, crucial for cytochrome b6-f complex assembly and/or stability.


Pssm-ID: 397695  Cd Length: 29  Bit Score: 30.05  E-value: 1.81e-03
                         10        20
                 ....*....|....*....|....
gi 257449347   1 LAWAALMVVFTFSLSLVVWGRSGL 24
Cdd:pfam03742  6 LGWAALLAVFTFSIAMVVWGRNGF 29
 
Name Accession Description Interval E-value
petN CHL00009
cytochrome b6/f complex subunit VIII
 1-24 2.38e-04

cytochrome b6/f complex subunit VIII


Pssm-ID: 176952  Cd Length: 29  Bit Score: 32.37  E-value: 2.38e-04
                        10        20
                ....*....|....*....|....
gi 257449347  1 LAWAALMVVFTFSLSLVVWGRSGL 24
Cdd:CHL00009  6 LAWAALMVVFTFSLSLVVWGRSGL 29
PetN pfam03742
PetN; PetN is a small hydrophobic protein, crucial for cytochrome b6-f complex assembly and/or ...
 1-24 1.81e-03

PetN; PetN is a small hydrophobic protein, crucial for cytochrome b6-f complex assembly and/or stability.


Pssm-ID: 397695  Cd Length: 29  Bit Score: 30.05  E-value: 1.81e-03
                         10        20
                 ....*....|....*....|....
gi 257449347   1 LAWAALMVVFTFSLSLVVWGRSGL 24
Cdd:pfam03742  6 LGWAALLAVFTFSIAMVVWGRNGF 29
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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