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Conserved domains on  [gi|256013063|gb|EEU04141|]
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hypothetical protein DDB_G0295817 [Dictyostelium discoideum AX4]

Protein Classification

SAP domain-containing protein( domain architecture ID 10488483)

SAP (SAF-A/B, Acinus and PIAS) domain-containing protein may bind DNA or RNA and act as a transcriptional regulator

CATH:  1.10.720.30
Gene Ontology:  GO:0003676|GO:0003700
PubMed:  10694879
SCOP:  4002795

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
SAP pfam02037
SAP domain; The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA/RNA binding ...
 683-709 1.45e-03

SAP domain; The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA/RNA binding domain found in diverse nuclear and cytoplasmic proteins.


:

Pssm-ID: 460424 [Multi-domain]  Cd Length: 35  Bit Score: 36.61  E-value: 1.45e-03
                          10        20
                  ....*....|....*....|....*..
gi 256013063  683 LRSYCKQNNLKLSGTKKDIVKRIYDFI 709
Cdd:pfam02037   9 LKEELRKRGLPTSGKKAELIERLQEYL 35
 
Name Accession Description Interval E-value
SAP pfam02037
SAP domain; The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA/RNA binding ...
 683-709 1.45e-03

SAP domain; The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA/RNA binding domain found in diverse nuclear and cytoplasmic proteins.


Pssm-ID: 460424 [Multi-domain]  Cd Length: 35  Bit Score: 36.61  E-value: 1.45e-03
                          10        20
                  ....*....|....*....|....*..
gi 256013063  683 LRSYCKQNNLKLSGTKKDIVKRIYDFI 709
Cdd:pfam02037   9 LKEELRKRGLPTSGKKAELIERLQEYL 35
 
Name Accession Description Interval E-value
SAP pfam02037
SAP domain; The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA/RNA binding ...
 683-709 1.45e-03

SAP domain; The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA/RNA binding domain found in diverse nuclear and cytoplasmic proteins.


Pssm-ID: 460424 [Multi-domain]  Cd Length: 35  Bit Score: 36.61  E-value: 1.45e-03
                          10        20
                  ....*....|....*....|....*..
gi 256013063  683 LRSYCKQNNLKLSGTKKDIVKRIYDFI 709
Cdd:pfam02037   9 LKEELRKRGLPTSGKKAELIERLQEYL 35
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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