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Conserved domains on  [gi|256012819|gb|EEU04045|]
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FNIP repeat-containing protein [Dictyostelium discoideum AX4]

Protein Classification

FNIP domain-containing protein( domain architecture ID 10529768)

FNIP domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
FNIP pfam05725
FNIP Repeat; This repeat is approximately 22 residues long and is only found in Dictyostelium ...
 260-302 3.85e-07

FNIP Repeat; This repeat is approximately 22 residues long and is only found in Dictyostelium discoideum. It appears to be related to pfam00560 (personal obs:C Yeats). The alignment consists of two tandem repeats. It is termed the FNIP repeat after the pattern of conserved residues.


:

Pssm-ID: 191356 [Multi-domain]  Cd Length: 44  Bit Score: 46.78  E-value: 3.85e-07
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|...
gi 256012819  260 NHSIPLNCLPETLEILKLGENYNSPIIIGSLPKSLKSLKFGKS 302
Cdd:pfam05725   2 NQPLEKGSLPNSLKSLIFGDSFNQPLEIGVLPNSLKSLEFGKS 44
FNIP super family cl05341
FNIP Repeat; This repeat is approximately 22 residues long and is only found in Dictyostelium ...
 436-481 6.42e-03

FNIP Repeat; This repeat is approximately 22 residues long and is only found in Dictyostelium discoideum. It appears to be related to pfam00560 (personal obs:C Yeats). The alignment consists of two tandem repeats. It is termed the FNIP repeat after the pattern of conserved residues.


The actual alignment was detected with superfamily member pfam05725:

Pssm-ID: 191356 [Multi-domain]  Cd Length: 44  Bit Score: 35.23  E-value: 6.42e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 256012819  436 FNQKIQPNSFShlKNLKTIKFGKSFNQSLENCIIPSTVNLITFKNS 481
Cdd:pfam05725   1 FNQPLEKGSLP--NSLKSLIFGDSFNQPLEIGVLPNSLKSLEFGKS 44
 
Name Accession Description Interval E-value
FNIP pfam05725
FNIP Repeat; This repeat is approximately 22 residues long and is only found in Dictyostelium ...
 260-302 3.85e-07

FNIP Repeat; This repeat is approximately 22 residues long and is only found in Dictyostelium discoideum. It appears to be related to pfam00560 (personal obs:C Yeats). The alignment consists of two tandem repeats. It is termed the FNIP repeat after the pattern of conserved residues.


Pssm-ID: 191356 [Multi-domain]  Cd Length: 44  Bit Score: 46.78  E-value: 3.85e-07
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|...
gi 256012819  260 NHSIPLNCLPETLEILKLGENYNSPIIIGSLPKSLKSLKFGKS 302
Cdd:pfam05725   2 NQPLEKGSLPNSLKSLIFGDSFNQPLEIGVLPNSLKSLEFGKS 44
FNIP pfam05725
FNIP Repeat; This repeat is approximately 22 residues long and is only found in Dictyostelium ...
 436-481 6.42e-03

FNIP Repeat; This repeat is approximately 22 residues long and is only found in Dictyostelium discoideum. It appears to be related to pfam00560 (personal obs:C Yeats). The alignment consists of two tandem repeats. It is termed the FNIP repeat after the pattern of conserved residues.


Pssm-ID: 191356 [Multi-domain]  Cd Length: 44  Bit Score: 35.23  E-value: 6.42e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 256012819  436 FNQKIQPNSFShlKNLKTIKFGKSFNQSLENCIIPSTVNLITFKNS 481
Cdd:pfam05725   1 FNQPLEKGSLP--NSLKSLIFGDSFNQPLEIGVLPNSLKSLEFGKS 44
 
Name Accession Description Interval E-value
FNIP pfam05725
FNIP Repeat; This repeat is approximately 22 residues long and is only found in Dictyostelium ...
 260-302 3.85e-07

FNIP Repeat; This repeat is approximately 22 residues long and is only found in Dictyostelium discoideum. It appears to be related to pfam00560 (personal obs:C Yeats). The alignment consists of two tandem repeats. It is termed the FNIP repeat after the pattern of conserved residues.


Pssm-ID: 191356 [Multi-domain]  Cd Length: 44  Bit Score: 46.78  E-value: 3.85e-07
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|...
gi 256012819  260 NHSIPLNCLPETLEILKLGENYNSPIIIGSLPKSLKSLKFGKS 302
Cdd:pfam05725   2 NQPLEKGSLPNSLKSLIFGDSFNQPLEIGVLPNSLKSLEFGKS 44
FNIP pfam05725
FNIP Repeat; This repeat is approximately 22 residues long and is only found in Dictyostelium ...
 281-326 4.24e-05

FNIP Repeat; This repeat is approximately 22 residues long and is only found in Dictyostelium discoideum. It appears to be related to pfam00560 (personal obs:C Yeats). The alignment consists of two tandem repeats. It is termed the FNIP repeat after the pattern of conserved residues.


Pssm-ID: 191356 [Multi-domain]  Cd Length: 44  Bit Score: 41.00  E-value: 4.24e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 256012819  281 YNSPIIIGSLPKSLKSLKFGKSFNQPLkQIGCFPlnENLNTLILGK 326
Cdd:pfam05725   1 FNQPLEKGSLPNSLKSLIFGDSFNQPL-EIGVLP--NSLKSLEFGK 43
FNIP pfam05725
FNIP Repeat; This repeat is approximately 22 residues long and is only found in Dictyostelium ...
 436-481 6.42e-03

FNIP Repeat; This repeat is approximately 22 residues long and is only found in Dictyostelium discoideum. It appears to be related to pfam00560 (personal obs:C Yeats). The alignment consists of two tandem repeats. It is termed the FNIP repeat after the pattern of conserved residues.


Pssm-ID: 191356 [Multi-domain]  Cd Length: 44  Bit Score: 35.23  E-value: 6.42e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 256012819  436 FNQKIQPNSFShlKNLKTIKFGKSFNQSLENCIIPSTVNLITFKNS 481
Cdd:pfam05725   1 FNQPLEKGSLP--NSLKSLIFGDSFNQPLEIGVLPNSLKSLEFGKS 44
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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