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Conserved domains on  [gi|255926673|gb|ACU40910|]
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cytochrome b, partial (mitochondrion) [Oreamnos harringtoni]

Protein Classification

cytochrome b( domain architecture ID 999999)

cytochrome b is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex) that is part of the mitochondrial respiratory chain; contributes to the generation of a proton gradient across the mitochondrial membrane that is then used for ATP synthesis

CATH:  1.20.810.10
Gene Ontology:  GO:0009055|GO:0046872|GO:0022904|GO:0005743|GO:0020037
PubMed:  2509716|8329437
SCOP:  4002208

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
CYTB super family cl31797
cytochrome b; Provisional
 1-116 5.87e-59

cytochrome b; Provisional


The actual alignment was detected with superfamily member MTH00100:

Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 185.61  E-value: 5.87e-59
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255926673   1 AFSSVTHICRDVNYGWIIRYMHANGASMFFICLFMHVGRGLYYGSYTFL******************************* 80
Cdd:MTH00100  62 AFSSVAHICRDVNYGWIIRYLHANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFW 141

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 255926673  81 GATVITNLLSAIPYIGTDLVEWIWGGFSVDKATLTR 116
Cdd:MTH00100 142 GATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTR 177
 
Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
 1-116 5.87e-59

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 185.61  E-value: 5.87e-59
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255926673   1 AFSSVTHICRDVNYGWIIRYMHANGASMFFICLFMHVGRGLYYGSYTFL******************************* 80
Cdd:MTH00100  62 AFSSVAHICRDVNYGWIIRYLHANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFW 141

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 255926673  81 GATVITNLLSAIPYIGTDLVEWIWGGFSVDKATLTR 116
Cdd:MTH00100 142 GATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTR 177
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-116 2.38e-34

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 117.47  E-value: 2.38e-34
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255926673   1 AFSSVTHICRDVNYGWIIRYMHANGASMFFICLFMHVGRGLYYGSY--TFL***************************** 78
Cdd:cd00284   54 AFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYYGSYkkPRELTWVIGVILLLLTMATAFMGYVLPWGQMS 133

                         90       100       110
                 ....*....|....*....|....*....|....*...
gi 255926673  79 **GATVITNLLSAIPYIGTDLVEWIWGGFSVDKATLTR 116
Cdd:cd00284  134 YWGATVITNLFSAIPVIGITLVEWLWGGFSVDNATLTR 171
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
1-116 2.89e-30

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 106.70  E-value: 2.89e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255926673    1 AFSSVTHICRDVNYGWIIRYMHANGASMFFICLFMHVGRGLYYG--SYTFL***************************** 78
Cdd:pfam00033  45 AFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIFRGLYYGgfSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQMS 124

                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 255926673   79 **GATVITNLLSAIPYIGTDLVEWIWGGFSVDKATLTR 116
Cdd:pfam00033 125 YWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATLTR 162
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-116 1.21e-24

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 96.01  E-value: 1.21e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255926673   1 AFSSVTHICRDVNYGWIIRYMHANGASMFFICLFMHVGRGLYYGSY---------------------------------T 47
Cdd:COG1290   71 AFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGAYkkprelnwiigvllllltmaeaftgyslpwdqlS 150

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 255926673  48 Fl*******************************GATVITNLLSAIPYIGTDLVEWIWGGFSVDKATLTR 116
Cdd:COG1290  151 Y-------------------------------WGARVITGLFGAIPVIGTWLVTWLFGGEFPGDATLNR 188
 
Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
 1-116 5.87e-59

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 185.61  E-value: 5.87e-59
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255926673   1 AFSSVTHICRDVNYGWIIRYMHANGASMFFICLFMHVGRGLYYGSYTFL******************************* 80
Cdd:MTH00100  62 AFSSVAHICRDVNYGWIIRYLHANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFW 141

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 255926673  81 GATVITNLLSAIPYIGTDLVEWIWGGFSVDKATLTR 116
Cdd:MTH00100 142 GATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTR 177
CYTB MTH00131
cytochrome b; Provisional
 1-116 1.37e-49

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 161.36  E-value: 1.37e-49
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255926673   1 AFSSVTHICRDVNYGWIIRYMHANGASMFFICLFMHVGRGLYYGSYTFL******************************* 80
Cdd:MTH00131  62 AFSSVAHICRDVNYGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFW 141

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 255926673  81 GATVITNLLSAIPYIGTDLVEWIWGGFSVDKATLTR 116
Cdd:MTH00131 142 GATVITNLLSAVPYVGNTLVQWIWGGFSVDNATLTR 177
CYTB MTH00074
cytochrome b; Provisional
 1-116 6.56e-49

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 159.46  E-value: 6.56e-49
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255926673   1 AFSSVTHICRDVNYGWIIRYMHANGASMFFICLFMHVGRGLYYGSYTFL******************************* 80
Cdd:MTH00074  63 AFSSVAHICRDVNYGWLMRNIHANGASFFFICIYLHIGRGLYYGSYMYKETWNIGVILLFLVMATAFVGYVLPWGQMSFW 142

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 255926673  81 GATVITNLLSAIPYIGTDLVEWIWGGFSVDKATLTR 116
Cdd:MTH00074 143 GATVITNLLSAIPYMGDTLVQWIWGGFSVDKATLTR 178
CYTB MTH00156
cytochrome b; Provisional
 1-116 6.92e-49

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 158.79  E-value: 6.92e-49
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255926673   1 AFSSVTHICRDVNYGWIIRYMHANGASMFFICLFMHVGRGLYYGSYTFL******************************* 80
Cdd:MTH00156  52 AFSSVIHICRDVNYGWLLRTLHANGASFFFICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFW 131

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 255926673  81 GATVITNLLSAIPYIGTDLVEWIWGGFSVDKATLTR 116
Cdd:MTH00156 132 GATVITNLLSAIPYLGTDLVQWIWGGFSVDNATLTR 167
CYTB MTH00191
cytochrome b; Provisional
 1-116 2.06e-48

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 157.77  E-value: 2.06e-48
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255926673   1 AFSSVTHICRDVNYGWIIRYMHANGASMFFICLFMHVGRGLYYGSYTFL******************************* 80
Cdd:MTH00191  59 AFSSVVHICRDVNYGWLLRNIHANGASFFFICIYLHIGRGLYYGSYLNKETWNVGVILLILSMATAFLGYVLPWGQMSFW 138

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 255926673  81 GATVITNLLSAIPYIGTDLVEWIWGGFSVDKATLTR 116
Cdd:MTH00191 139 GATVITNLLSAIPYIGDDLVQWLWGGFSVDNATLTR 174
CYTB MTH00119
cytochrome b; Provisional
 1-116 5.22e-48

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 157.37  E-value: 5.22e-48
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255926673   1 AFSSVTHICRDVNYGWIIRYMHANGASMFFICLFMHVGRGLYYGSYTFL******************************* 80
Cdd:MTH00119  63 AFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVLPWGQMSFW 142

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 255926673  81 GATVITNLLSAIPYIGTDLVEWIWGGFSVDKATLTR 116
Cdd:MTH00119 143 GATVITNLLSAIPYIGQTLVEWIWGGFSVDNPTLTR 178
CYTB MTH00016
cytochrome b; Validated
 1-116 2.56e-44

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 147.52  E-value: 2.56e-44
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255926673   1 AFSSVTHICRDVNYGWIIRYMHANGASMFFICLFMHVGRGLYYGSYTFL******************************* 80
Cdd:MTH00016  63 AFSSVAHISRDVNYGWLLRNLHANGASFFFICLYLHIGRGIYYGSYFLMETWNIGVILLLLTMATAFLGYVLPWGQMSFW 142

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 255926673  81 GATVITNLLSAIPYIGTDLVEWIWGGFSVDKATLTR 116
Cdd:MTH00016 143 GATVITNLLSAIPYIGKMLVQWLWGGFSVDNATLTR 178
CYTB MTH00034
cytochrome b; Validated
 1-116 9.13e-44

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 146.39  E-value: 9.13e-44
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255926673   1 AFSSVTHICRDVNYGWIIRYMHANGASMFFICLFMHVGRGLYYGSYTFL******************************* 80
Cdd:MTH00034  62 AFSSVSHICRDVNYGWLLRNIHANGASLFFICLYFHIGRGLYYGSYVNIETWNIGVILFLLTMLTAFVGYVLPWGQMSFW 141

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 255926673  81 GATVITNLLSAIPYIGTDLVEWIWGGFSVDKATLTR 116
Cdd:MTH00034 142 AATVITNLVSAVPYIGTDIVQWIWGGFSVDNATLTR 177
CYTB MTH00145
cytochrome b; Provisional
 1-116 1.43e-42

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 143.12  E-value: 1.43e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255926673   1 AFSSVTHICRDVNYGWIIRYMHANGASMFFICLFMHVGRGLYYGSYTFL******************************* 80
Cdd:MTH00145  63 AFSSVIHIMRDVNYGWLLRSLHANGASFFFICIYLHIGRGLYYGSYLMQHTWNIGVTLLLLSMGTAFLGYVLPWGQMSFW 142

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 255926673  81 GATVITNLLSAIPYIGTDLVEWIWGGFSVDKATLTR 116
Cdd:MTH00145 143 GATVITNLLSAIPYVGKMLVEWVWGGFSVGNATLKR 178
CYTB MTH00022
cytochrome b; Validated
 1-116 1.76e-39

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 135.21  E-value: 1.76e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255926673   1 AFSSVTHICRDVNYGWIIRYMHANGASMFFICLFMHVGRGLYYGSYTFL******************************* 80
Cdd:MTH00022  61 AFASVGHIMRDVNYGFLLRYLHANGASLFFLCLYIHIGRGLYYGGYLKFHVWNVGVVIFLLTMATAFMGYVLPWGQMSFW 140

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 255926673  81 GATVITNLLSAIPYIGTDLVEWIWGGFSVDKATLTR 116
Cdd:MTH00022 141 GATVITNLLSAIPYVGTDIVQWVWGGFSVSNATLNR 176
CYTB MTH00224
cytochrome b; Provisional
 1-116 2.90e-38

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 131.97  E-value: 2.90e-38
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255926673   1 AFSSVTHICRDVNYGWIIRYMHANGASMFFICLFMHVGRGLYYGSYTFL******************************* 80
Cdd:MTH00224  63 AFSSVAHISRDVNYGWLLRSIHANGASMFFLFIYLHVGRGLYYGSFNLSETWNIGVILFILTMATAFLGYVLPWGQMSFW 142

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 255926673  81 GATVITNLLSAIPYIGTDLVEWIWGGFSVDKATLTR 116
Cdd:MTH00224 143 GATVITNLFSAIPYIGKDLVEWIWGGFAVDNATLNR 178
CYTB MTH00053
cytochrome b; Provisional
 1-116 2.49e-36

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 126.74  E-value: 2.49e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255926673   1 AFSSVTHICRDVNYGWIIRYMHANGASMFFICLFMHVGRGLYYGSYTFL******************************* 80
Cdd:MTH00053  63 AFSSVAHITRDVNYGFILRYLHANGASMFFLCVYFHIGRGIYYGSYTKIIVWNVGVLIFLLMILTAFIGYVLPWGQMSFW 142

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 255926673  81 GATVITNLLSAIPYIGTDLVEWIWGGFSVDKATLTR 116
Cdd:MTH00053 143 AATVITNLLSAIPYVGDDIVRWVWGGFSVSNATLNR 178
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-116 2.38e-34

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 117.47  E-value: 2.38e-34
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255926673   1 AFSSVTHICRDVNYGWIIRYMHANGASMFFICLFMHVGRGLYYGSY--TFL***************************** 78
Cdd:cd00284   54 AFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYYGSYkkPRELTWVIGVILLLLTMATAFMGYVLPWGQMS 133

                         90       100       110
                 ....*....|....*....|....*....|....*...
gi 255926673  79 **GATVITNLLSAIPYIGTDLVEWIWGGFSVDKATLTR 116
Cdd:cd00284  134 YWGATVITNLFSAIPVIGITLVEWLWGGFSVDNATLTR 171
CYTB MTH00033
cytochrome b; Provisional
 1-116 3.39e-31

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 113.49  E-value: 3.39e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255926673   1 AFSSVTHICRDVNYGWIIRYMHANGASMFFICLFMHVGRGLYYGSYTFL******************************* 80
Cdd:MTH00033  59 AFSSVAHIVRDVNYGWILRYVHANGASLFFICVYCHIGRGLYYGGYSRVLTWIVGVLIFFIMMLTAFIGYVLPWGQMSFW 138

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 255926673  81 GATVITNLLSAIPYIGTDLVEWIWGGFSVDKATLTR 116
Cdd:MTH00033 139 AATVITNLVSAIPSVGGSIVEWIWGGFSVSNCTLNR 174
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
1-116 2.89e-30

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 106.70  E-value: 2.89e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255926673    1 AFSSVTHICRDVNYGWIIRYMHANGASMFFICLFMHVGRGLYYG--SYTFL***************************** 78
Cdd:pfam00033  45 AFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIFRGLYYGgfSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQMS 124

                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 255926673   79 **GATVITNLLSAIPYIGTDLVEWIWGGFSVDKATLTR 116
Cdd:pfam00033 125 YWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATLTR 162
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-116 1.21e-24

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 96.01  E-value: 1.21e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255926673   1 AFSSVTHICRDVNYGWIIRYMHANGASMFFICLFMHVGRGLYYGSY---------------------------------T 47
Cdd:COG1290   71 AFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGAYkkprelnwiigvllllltmaeaftgyslpwdqlS 150

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 255926673  48 Fl*******************************GATVITNLLSAIPYIGTDLVEWIWGGFSVDKATLTR 116
Cdd:COG1290  151 Y-------------------------------WGARVITGLFGAIPVIGTWLVTWLFGGEFPGDATLNR 188
CYTB MTH00086
cytochrome b; Provisional
 1-114 8.12e-24

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 93.08  E-value: 8.12e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255926673   1 AFSSVTHICRDVNYGWIIRYMHANGASMFFICLFMHVGRGLYYGSYTFL******************************* 80
Cdd:MTH00086  51 AFSSVQYIMYEVNFGWLFRIFHFNGASLFFIFLYLHIFKGLFMMSYRLKKVWISGLTIYLLVMMEAFMGYVLVWAQMSFW 130

                         90       100       110
                 ....*....|....*....|....*....|....
gi 255926673  81 GATVITNLLSAIPYIGTDLVEWIWGGFSVDKATL 114
Cdd:MTH00086 131 AAVVITSLLSVIPIWGPSIVMWIWGGFGVSSATL 164
CYTB MTH00046
cytochrome b; Validated
 2-116 1.83e-10

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 56.14  E-value: 1.83e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255926673   2 FSSVTHICRDVNYGWIIRYMHANGASMFFICLFMHVGRGLYYGSYTFL*******************************G 81
Cdd:MTH00046  54 FFCVMSLSNDSFFTWCVRYWHIWGVNVLFILLFIHMGRALYYSSYSKKGVWNVGFILYLLVMVEAFLGYILPWHQMSYWA 133

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 255926673  82 ATVITNLLSAIPYIGTDLVEWIWGGFSVDKATLTR 116
Cdd:MTH00046 134 ATVLTSIVDSVPIVGSLVYKYIVGGFSVTGVTLVR 168
PRK03735 PRK03735
cytochrome b6; Provisional
 1-116 1.23e-08

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 50.48  E-value: 1.23e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255926673   1 AFSSVTHICRDVNYGWIIRYMHANGASMFFICLFMHVGRGLYYGSYTFL*************************--**** 78
Cdd:PRK03735  73 AYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKPRELNWVVGVLIFFVTVGLGFTGYLLpwDQKA 152

                         90       100       110
                 ....*....|....*....|....*....|....*...
gi 255926673  79 **GATVITNLLSAIPYIGTDLVEWIWGGFSVDKATLTR 116
Cdd:PRK03735 153 YFATKVGSQIAEAIPVIGDFIKTLLRGGEIVGAQTLTR 190
petB CHL00070
cytochrome b6
 1-116 6.20e-07

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 45.87  E-value: 6.20e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255926673   1 AFSSVTHICRDVNYGWIIRYMHANGASMFFICLFMHVGRGLYYGSYTFL*************************--**** 78
Cdd:CHL00070  65 AFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPRELTWVTGVVLAVLTVSFGVTGYSLpwDQIG 144

                         90       100       110
                 ....*....|....*....|....*....|....*...
gi 255926673  79 **GATVITNLLSAIPYIGTDLVEWIWGGFSVDKATLTR 116
Cdd:CHL00070 145 YWAVKIVTGVPEAIPVIGSPLVELLRGSVSVGQSTLTR 182
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
81-116 1.14e-05

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 41.84  E-value: 1.14e-05
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 255926673   81 GATVITNLLSAIPYIGTDLVEWIWGGFSVDKATLTR 116
Cdd:pfam13631  57 GLRIGLGILSSIPVVGTWLVWLLFGGPFPGTATIPR 92
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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