NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|254667445|ref|YP_003075960|]
View 

5' extended coat protein [Kalanchoe latent virus]

Protein Classification

Flexi_CP_N and Flexi_CP domain-containing protein( domain architecture ID 10551227)

Flexi_CP_N and Flexi_CP domain-containing protein

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
Flexi_CP super family cl02836
Viral coat protein; Family includes coat proteins from Potexviruses and carlaviruses.
 181-320 7.75e-56

Viral coat protein; Family includes coat proteins from Potexviruses and carlaviruses.


The actual alignment was detected with superfamily member pfam00286:

Pssm-ID: 425583  Cd Length: 138  Bit Score: 179.16  E-value: 7.75e-56
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254667445  181 SNNMATTEQMAKITADITGLGVPSEQVAEVILKMVIMCASVSSSAFLDPDGSveFSSGAVPVDSIAAIMKKHAGLRKVCR 260
Cdd:pfam00286   1 SNSIASNEDMARIEVILDTLQVPTENVTQVGIELAIACADNGSSRFTDLNGT--FPGPAITREALAAVIKESCTLRQFCA 78

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 254667445  261 LYAPIVWNSMLVRNQPPSDWQAMGFPFNARFAAFDTFDYVTNAAAIQPVEGIIRRPTSEE 320
Cdd:pfam00286  79 YYAKVVWNHMLTHNTPPANWAAKGFTEETKFAAFDFFDAVLSPAALPPPEGLIRKPTQAE 138
Flexi_CP_N pfam08358
Carlavirus coat; This domain is found together with the viral coat protein domain (pfam00286) ...
 121-172 2.05e-24

Carlavirus coat; This domain is found together with the viral coat protein domain (pfam00286) in coat/capsid proteins of Carlaviruses infecting plants.


:

Pssm-ID: 149427  Cd Length: 52  Bit Score: 94.21  E-value: 2.05e-24
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 254667445  121 RLTNLIETLNKDMHNSNLKNIAFEIGRPVLEPTAQMKRNPANPYGRFSIDEL 172
Cdd:pfam08358   1 RLTKLKEFLRKNRTASNVTNPGFEIGRPALKPTDDMRGDPTNPYSRPSLDAL 52
 
Name Accession Description Interval E-value
Flexi_CP pfam00286
Viral coat protein; Family includes coat proteins from Potexviruses and carlaviruses.
 181-320 7.75e-56

Viral coat protein; Family includes coat proteins from Potexviruses and carlaviruses.


Pssm-ID: 425583  Cd Length: 138  Bit Score: 179.16  E-value: 7.75e-56
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254667445  181 SNNMATTEQMAKITADITGLGVPSEQVAEVILKMVIMCASVSSSAFLDPDGSveFSSGAVPVDSIAAIMKKHAGLRKVCR 260
Cdd:pfam00286   1 SNSIASNEDMARIEVILDTLQVPTENVTQVGIELAIACADNGSSRFTDLNGT--FPGPAITREALAAVIKESCTLRQFCA 78

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 254667445  261 LYAPIVWNSMLVRNQPPSDWQAMGFPFNARFAAFDTFDYVTNAAAIQPVEGIIRRPTSEE 320
Cdd:pfam00286  79 YYAKVVWNHMLTHNTPPANWAAKGFTEETKFAAFDFFDAVLSPAALPPPEGLIRKPTQAE 138
Flexi_CP_N pfam08358
Carlavirus coat; This domain is found together with the viral coat protein domain (pfam00286) ...
 121-172 2.05e-24

Carlavirus coat; This domain is found together with the viral coat protein domain (pfam00286) in coat/capsid proteins of Carlaviruses infecting plants.


Pssm-ID: 149427  Cd Length: 52  Bit Score: 94.21  E-value: 2.05e-24
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 254667445  121 RLTNLIETLNKDMHNSNLKNIAFEIGRPVLEPTAQMKRNPANPYGRFSIDEL 172
Cdd:pfam08358   1 RLTKLKEFLRKNRTASNVTNPGFEIGRPALKPTDDMRGDPTNPYSRPSLDAL 52
 
Name Accession Description Interval E-value
Flexi_CP pfam00286
Viral coat protein; Family includes coat proteins from Potexviruses and carlaviruses.
 181-320 7.75e-56

Viral coat protein; Family includes coat proteins from Potexviruses and carlaviruses.


Pssm-ID: 425583  Cd Length: 138  Bit Score: 179.16  E-value: 7.75e-56
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254667445  181 SNNMATTEQMAKITADITGLGVPSEQVAEVILKMVIMCASVSSSAFLDPDGSveFSSGAVPVDSIAAIMKKHAGLRKVCR 260
Cdd:pfam00286   1 SNSIASNEDMARIEVILDTLQVPTENVTQVGIELAIACADNGSSRFTDLNGT--FPGPAITREALAAVIKESCTLRQFCA 78

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 254667445  261 LYAPIVWNSMLVRNQPPSDWQAMGFPFNARFAAFDTFDYVTNAAAIQPVEGIIRRPTSEE 320
Cdd:pfam00286  79 YYAKVVWNHMLTHNTPPANWAAKGFTEETKFAAFDFFDAVLSPAALPPPEGLIRKPTQAE 138
Flexi_CP_N pfam08358
Carlavirus coat; This domain is found together with the viral coat protein domain (pfam00286) ...
 121-172 2.05e-24

Carlavirus coat; This domain is found together with the viral coat protein domain (pfam00286) in coat/capsid proteins of Carlaviruses infecting plants.


Pssm-ID: 149427  Cd Length: 52  Bit Score: 94.21  E-value: 2.05e-24
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 254667445  121 RLTNLIETLNKDMHNSNLKNIAFEIGRPVLEPTAQMKRNPANPYGRFSIDEL 172
Cdd:pfam08358   1 RLTKLKEFLRKNRTASNVTNPGFEIGRPALKPTDDMRGDPTNPYSRPSLDAL 52
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH