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Conserved domains on  [gi|2499259|sp|Q96066|]
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RecName: Full=NADH-ubiquinone oxidoreductase chain 3; AltName: Full=NADH dehydrogenase subunit 3

Protein Classification

NADH dehydrogenase subunit 3( domain architecture ID 10009567)

NADH dehydrogenase subunit 3 is a core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that couples the transfer of electrons from NADH to quinone with the translocation of protons across the membrane

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND3 MTH00106
NADH dehydrogenase subunit 3; Provisional
 14-115 7.19e-67

NADH dehydrogenase subunit 3; Provisional


:

Pssm-ID: 177168 [Multi-domain]  Cd Length: 115  Bit Score: 196.70  E-value: 7.19e-67
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2499259    14 SSVLVLIAFWLPQLNIYTEKSSPYECGFDPMVSARLPFSMKFFLVAITFLLFDLEIALLLPLPWASQTTNLKTMLTMALI 93
Cdd:MTH00106  14 ASLLVLIAFWLPQLNIYSEKASPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWASQTNNLNTMLTMALL 93

                         90       100
                 ....*....|....*....|..
gi 2499259    94 LISLLAASLAYEWTQKGLEWTE 115
Cdd:MTH00106  94 LISLLALSLAYEWTQKGLEWTE 115
 
Name Accession Description Interval E-value
ND3 MTH00106
NADH dehydrogenase subunit 3; Provisional
 14-115 7.19e-67

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177168 [Multi-domain]  Cd Length: 115  Bit Score: 196.70  E-value: 7.19e-67
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2499259    14 SSVLVLIAFWLPQLNIYTEKSSPYECGFDPMVSARLPFSMKFFLVAITFLLFDLEIALLLPLPWASQTTNLKTMLTMALI 93
Cdd:MTH00106  14 ASLLVLIAFWLPQLNIYSEKASPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWASQTNNLNTMLTMALL 93

                         90       100
                 ....*....|....*....|..
gi 2499259    94 LISLLAASLAYEWTQKGLEWTE 115
Cdd:MTH00106  94 LISLLALSLAYEWTQKGLEWTE 115
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
18-112 1.01e-29

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 102.12  E-value: 1.01e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2499259     18 VLIAFWLPQLNIYTEKSSPYECGFDPMVSARLPFSMKFFLVAITFLLFDLEIALLlpLPWASQTTNLKTM-LTMALILIS 96
Cdd:pfam00507   1 LLLSRLLGPKRPNPEKLSPYECGFDPVGDARLRFSVRFYLVAILFLIFDVEVVFL--FPWAVSFRELGWFgFVEMLIFIA 78

                          90
                  ....*....|....*.
gi 2499259     97 LLAASLAYEWTQKGLE 112
Cdd:pfam00507  79 ILLVGLVYAWKKGALE 94
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
 16-113 3.50e-20

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 78.62  E-value: 3.50e-20
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2499259   16 VLVLIAFWLPQLNIYTEKSSPYECGFDPMVSARLPFSMKFFLVAITFLLFDLEIALLlpLPWASQTTNLKTM-LTMALIL 94
Cdd:COG0838  21 AMLLLSRLLGPKRPNPEKLSPYECGIEPVGDARIRFSVRYYLVALLFVIFDVEVVFL--FPWAVVFRELGWFgLIEMLVF 98

                        90
                ....*....|....*....
gi 2499259   95 ISLLAASLAYEWTQKGLEW 113
Cdd:COG0838  99 IAILLVGLIYAWKKGALEW 117
 
Name Accession Description Interval E-value
ND3 MTH00106
NADH dehydrogenase subunit 3; Provisional
 14-115 7.19e-67

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177168 [Multi-domain]  Cd Length: 115  Bit Score: 196.70  E-value: 7.19e-67
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2499259    14 SSVLVLIAFWLPQLNIYTEKSSPYECGFDPMVSARLPFSMKFFLVAITFLLFDLEIALLLPLPWASQTTNLKTMLTMALI 93
Cdd:MTH00106  14 ASLLVLIAFWLPQLNIYSEKASPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWASQTNNLNTMLTMALL 93

                         90       100
                 ....*....|....*....|..
gi 2499259    94 LISLLAASLAYEWTQKGLEWTE 115
Cdd:MTH00106  94 LISLLALSLAYEWTQKGLEWTE 115
ND3 MTH00136
NADH dehydrogenase subunit 3; Provisional
 14-115 4.36e-45

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177194 [Multi-domain]  Cd Length: 116  Bit Score: 141.98  E-value: 4.36e-45
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2499259    14 SSVLVLIAFWLPQLNIYTEKSSPYECGFDPMVSARLPFSMKFFLVAITFLLFDLEIALLLPLPWASQTTNLKTMLTMALI 93
Cdd:MTH00136  15 SLILAIVSFWLPQMTPDHEKLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLLPLPWGDQLPSPLLTFFWATA 94

                         90       100
                 ....*....|....*....|..
gi 2499259    94 LISLLAASLAYEWTQKGLEWTE 115
Cdd:MTH00136  95 VLILLTLGLIYEWLQGGLEWAE 116
ND3 MTH00069
NADH dehydrogenase subunit 3; Provisional
 14-115 6.85e-43

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177141 [Multi-domain]  Cd Length: 114  Bit Score: 136.28  E-value: 6.85e-43
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2499259    14 SSVLVLIAFWLPQLNIYTEKSSPYECGFDPMVSARLPFSMKFFLVAITFLLFDLEIALLLPLPWASQTTNLKTMLTMALI 93
Cdd:MTH00069  13 SLILITISFWLPLNNPDSEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPTPWASQLNTPTNTLFWSTL 92

                         90       100
                 ....*....|....*....|..
gi 2499259    94 LISLLAASLAYEWTQKGLEWTE 115
Cdd:MTH00069  93 ILILLTLGLIYEWIQGGLEWAE 114
ND3 MTH00113
NADH dehydrogenase subunit 3; Provisional
 1-114 4.80e-41

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177175 [Multi-domain]  Cd Length: 114  Bit Score: 131.54  E-value: 4.80e-41
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2499259     1 MNLILTLLINTLLSSVLVLIAFWLPQLNIYTEKSSPYECGFDPMVSARLPFSMKFFLVAITFLLFDLEIALLLPLPWASQ 80
Cdd:MTH00113   1 MNLISMLTISLALSTILTTLNFWLTQTKPDNEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPLPWAIN 80

                         90       100       110
                 ....*....|....*....|....*....|....
gi 2499259    81 TTNLKTMLTMALILISLLAASLAYEWTQKGLEWT 114
Cdd:MTH00113  81 LTTPTTTLTWATIILTLLTLGLIYEWLQGGLEWA 114
ND3 MTH00042
NADH dehydrogenase subunit 3; Validated
 14-115 3.97e-37

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 177117 [Multi-domain]  Cd Length: 116  Bit Score: 121.63  E-value: 3.97e-37
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2499259    14 SSVLVLIAFWLPQLNIYTEKSSPYECGFDPMVSARLPFSMKFFLVAITFLLFDLEIALLLPLPWASQTTNLKTMLTMALI 93
Cdd:MTH00042  15 TSLLLLAGHFLPSRSPDLEKSSPYECGFDPLNSARLPFSFRFFLVAILFLLFDLEIALLFPLPPATLITNPSTLLPISLI 94

                         90       100
                 ....*....|....*....|..
gi 2499259    94 LISLLAASLAYEWTQKGLEWTE 115
Cdd:MTH00042  95 FLIILTIGLVYEWVNGGLEWAE 116
ND3 MTH00203
NADH dehydrogenase subunit 3; Provisional
 14-113 3.91e-32

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214456 [Multi-domain]  Cd Length: 112  Bit Score: 108.83  E-value: 3.91e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2499259    14 SSVLVLIAFWLPQLNIYTEKSSPYECGFDPMVSARLPFSMKFFLVAITFLLFDLEIALLLPLPWASQTTNLKTMltMALI 93
Cdd:MTH00203  15 SLILLFIAFWLPKVNPDGEKLSPYECGFDPLGSARLPFSLQFFLVALSFLLFDLEIALLLPLPWSNQLSSLSLL--LAFL 92

                         90       100
                 ....*....|....*....|
gi 2499259    94 LISLLAASLAYEWTQKGLEW 113
Cdd:MTH00203  93 FLILLTLGLIYEWLQGGLEW 112
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
18-112 1.01e-29

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 102.12  E-value: 1.01e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2499259     18 VLIAFWLPQLNIYTEKSSPYECGFDPMVSARLPFSMKFFLVAITFLLFDLEIALLlpLPWASQTTNLKTM-LTMALILIS 96
Cdd:pfam00507   1 LLLSRLLGPKRPNPEKLSPYECGFDPVGDARLRFSVRFYLVAILFLIFDVEVVFL--FPWAVSFRELGWFgFVEMLIFIA 78

                          90
                  ....*....|....*.
gi 2499259     97 LLAASLAYEWTQKGLE 112
Cdd:pfam00507  79 ILLVGLVYAWKKGALE 94
ND3 MTH00148
NADH dehydrogenase subunit 3; Provisional
 14-115 1.72e-26

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214433 [Multi-domain]  Cd Length: 117  Bit Score: 94.54  E-value: 1.72e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2499259    14 SSVLVLIAFWLPQLNIY-TEKSSPYECGFDPMVSARLPFSMKFFLVAITFLLFDLEIALLLPLPWASQTTNLKTMLTMAL 92
Cdd:MTH00148  15 SPVLLLLGLVLSKRSYSdREKSSPFECGFDPISSARSPFSLRFFLLAILFLVFDVEIVLLFPVLQSLGSSFSVWSLTSLF 94

                         90       100
                 ....*....|....*....|...
gi 2499259    93 ILISLLAASLAYEWTQKGLEWTE 115
Cdd:MTH00148  95 IFLLILILGLFHEWNEGSLDWVS 117
ND3 MTH00161
NADH dehydrogenase subunit 3; Provisional
 32-113 6.17e-26

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177217 [Multi-domain]  Cd Length: 113  Bit Score: 93.30  E-value: 6.17e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2499259    32 EKSSPYECGFDPMVSARLPFSMKFFLVAITFLLFDLEIALLLPLPWASQTTNLKTMLTMALILISLLAASLAYEWTQKGL 111
Cdd:MTH00161  32 EKSSPFECGFDPKSSARLPFSLRFFLIAIIFLIFDVEIALLLPMIFIFKTSNMMSWLITSSFFILILLLGLYYEWNQGAL 111


                 ..
gi 2499259   112 EW 113
Cdd:MTH00161 112 EW 113
ND3 MTH00202
NADH dehydrogenase subunit 3; Provisional
 15-113 4.41e-23

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214455 [Multi-domain]  Cd Length: 117  Bit Score: 86.20  E-value: 4.41e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2499259    15 SVLVLIAFWL--PQLNIYTEKSSPYECGFDPMVSARLPFSMKFFLVAITFLLFDLEIALLLPLPWASQTTNLKTMLTMAL 92
Cdd:MTH00202  15 SSLLFLVSWMlsFRSLMDREKSSPFECGFDPKESARLPFSMRFFLLAVIFLVFDIEIALLLPLPLVLKSSWSKGGLLGGT 94

                         90       100
                 ....*....|....*....|.
gi 2499259    93 ILISLLAASLAYEWTQKGLEW 113
Cdd:MTH00202  95 IFLLILIGGLIHEWKEGSLDW 115
ND3 MTH00012
NADH dehydrogenase subunit 3; Validated
 32-114 2.23e-21

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 164588 [Multi-domain]  Cd Length: 117  Bit Score: 81.83  E-value: 2.23e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2499259    32 EKSSPYECGFDPMVSARLPFSMKFFLVAITFLLFDLEIALLLPLPWASQTTNLKTMLTMALILISLLAASLAYEWTQKGL 111
Cdd:MTH00012  34 EKTSPFECGFDPHKTARIPFSLRFFLLAIIFIVFDIEIVLLMPVPTILMTSTSKTVVYTSILFLLILVIGLIHEWREGSL 113


                 ...
gi 2499259   112 EWT 114
Cdd:MTH00012 114 DWS 116
ND3 MTH00055
NADH dehydrogenase subunit 3; Provisional
 31-113 1.98e-20

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177128 [Multi-domain]  Cd Length: 118  Bit Score: 79.37  E-value: 1.98e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2499259    31 TEKSSPYECGFDPMVSARLPFSMKFFLVAITFLLFDLEIALLLPLPWASQTTNLKTMLTMALILIsLLAASLAYEWTQKG 110
Cdd:MTH00055  36 SEKVSVYECGFDPFESSRIPFSVRFFLVGILFLIFDLEISFLFPWCVVYNQIGLFGFWVMYLFLI-ILTIGLIYEWVKGG 114


                 ...
gi 2499259   111 LEW 113
Cdd:MTH00055 115 LEW 117
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
 16-113 3.50e-20

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 78.62  E-value: 3.50e-20
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2499259   16 VLVLIAFWLPQLNIYTEKSSPYECGFDPMVSARLPFSMKFFLVAITFLLFDLEIALLlpLPWASQTTNLKTM-LTMALIL 94
Cdd:COG0838  21 AMLLLSRLLGPKRPNPEKLSPYECGIEPVGDARIRFSVRYYLVALLFVIFDVEVVFL--FPWAVVFRELGWFgLIEMLVF 98

                        90
                ....*....|....*....
gi 2499259   95 ISLLAASLAYEWTQKGLEW 113
Cdd:COG0838  99 IAILLVGLIYAWKKGALEW 117
PRK06602 PRK06602
NADH:ubiquinone oxidoreductase subunit A; Validated
 16-114 2.35e-17

NADH:ubiquinone oxidoreductase subunit A; Validated


Pssm-ID: 180638 [Multi-domain]  Cd Length: 121  Bit Score: 71.43  E-value: 2.35e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2499259    16 VLVLIAFWLPQLNIYTEKSSPYECGFDPMVSARLPFSMKFFLVAITFLLFDLEIALLlpLPWASQTTNL-KTMLTMALIL 94
Cdd:PRK06602  24 LLLVAGKLLGPRAPDREKNSPYESGFEAFGDARMKFDVRFYLVAILFVIFDLEAAFL--FPWAVSFREIgWLGFVEAMIF 101

                         90       100
                 ....*....|....*....|
gi 2499259    95 ISLLAASLAYEWTQKGLEWT 114
Cdd:PRK06602 102 ILVLLVGLVYLWRKGALDWE 121
ND3 MTH00018
NADH dehydrogenase subunit 3; Validated
 32-113 1.80e-16

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 164592 [Multi-domain]  Cd Length: 113  Bit Score: 68.93  E-value: 1.80e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2499259    32 EKSSPYECGFDPMVSARLPFSMKFFLVAITFLLFDLEIALLLPLPWASQTTNLKTMLTMALILIsLLAASLAYEWTQKGL 111
Cdd:MTH00018  32 EKVSAYECGFDPFGFPGRPFSIRFFLIGILFLIFDLEISFLFPWCVLYNQIAPFGFWTMVGFLF-ILTLGLIYEWIKGGL 110


                 ..
gi 2499259   112 EW 113
Cdd:MTH00018 111 EW 112
ND3 MTH00030
NADH dehydrogenase subunit 3; Provisional
 31-113 6.78e-16

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 164603 [Multi-domain]  Cd Length: 123  Bit Score: 68.04  E-value: 6.78e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2499259    31 TEKSSPYECGFDPMVSARLPFSMKFFLVAITFLLFDLEIALLLPLPWASQTTNLKTMLTMALILIsLLAASLAYEWTQKG 110
Cdd:MTH00030  41 SEKSSIYECGFDPFGKIRTPFTIKFVLVGILFMIFDIEISFLFPWSIVFNQLNLFSFWIVYTFLI-VLAIGLAYEWIKGG 119


                 ...
gi 2499259   111 LEW 113
Cdd:MTH00030 120 LEW 122
PRK07928 PRK07928
NADH dehydrogenase subunit A; Validated
 33-114 3.04e-10

NADH dehydrogenase subunit A; Validated


Pssm-ID: 181171 [Multi-domain]  Cd Length: 119  Bit Score: 53.14  E-value: 3.04e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2499259    33 KSSPYECGFDPMVSARLP--FSMKFFLVAITFLLFDLEIALLLPlpWASQTTNLKT--MLTMALILISLLAAsLAYEWTQ 108
Cdd:PRK07928  37 KLEAYECGIEPTPQPAGGgrFPVKYYLTAMLFIVFDIEIVFLYP--WAVSFDALGVfgLVEMALFMLTVFVA-YAYVWRR 113


                 ....*.
gi 2499259   109 KGLEWT 114
Cdd:PRK07928 114 GGLEWD 119
PRK07756 PRK07756
NADH-quinone oxidoreductase subunit A;
32-113 3.52e-09

NADH-quinone oxidoreductase subunit A;


Pssm-ID: 169084 [Multi-domain]  Cd Length: 122  Bit Score: 50.51  E-value: 3.52e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2499259    32 EKSSPYECGFDPMVSARLPFSMKFFLVAITFLLFDLEIALLLPLPWASQTTNLKTMLTMaLILISLLAASLAYEWTQKGL 111
Cdd:PRK07756  41 AKATTYESGIEPFHDANIRFHARYYIFALLFVIFDVETLFLYPWAVAYDKLGLFALIEM-LIFVVMLLVGLAYAWKKKVL 119


                 ..
gi 2499259   112 EW 113
Cdd:PRK07756 120 QW 121
ndhC CHL00022
NADH dehydrogenase subunit 3
 14-114 1.19e-08

NADH dehydrogenase subunit 3


Pssm-ID: 176964 [Multi-domain]  Cd Length: 120  Bit Score: 49.22  E-value: 1.19e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2499259    14 SSVLVLIAFWLPQL----NIYTEKSSPYECGFDPMVSARLPFSMKFFLVAITFLLFDLEIALLlpLPWASQTTNLK-TML 88
Cdd:CHL00022  17 SSLIPILAFLISGLlapiSKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFL--YPWAMSFDVLGvSAF 94

                         90       100
                 ....*....|....*....|....*.
gi 2499259    89 TMALILISLLAASLAYEWTQKGLEWT 114
Cdd:CHL00022  95 IEALIFVLILIVGLVYAWRKGALEWS 120
PRK08489 PRK08489
NAD(P)H-quinone oxidoreductase subunit 3;
33-113 5.79e-06

NAD(P)H-quinone oxidoreductase subunit 3;


Pssm-ID: 181448 [Multi-domain]  Cd Length: 129  Bit Score: 42.35  E-value: 5.79e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2499259    33 KSSPYECGfdPMVSARL-PFSMKFFLVAITFLLFDLEIALLlpLPWASQTTNLKTM-LTMALILISLLAASLAYEWTQKG 110
Cdd:PRK08489  47 KLAIYECG--PEPVKQPnRISSHFYIMALLFILFDVEIVFM--FPWAVDFKLLGLFgLIEMLLFIVLLTIGFIYAWKKGA 122


                 ...
gi 2499259   111 LEW 113
Cdd:PRK08489 123 LEW 125
ND3 MTH00092
NADH dehydrogenase subunit 3; Provisional
 16-114 7.69e-05

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177155  Cd Length: 111  Bit Score: 38.72  E-value: 7.69e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2499259    16 VLVLIAFWLPQLNIYTEKSSPYECGFDPMVSARLPFSMKFFLVAITFLLFDLEIALLLPLpwasqTTNLKTMLTMALILI 95
Cdd:MTH00092  17 LLYLLNFFLSVKKFDLLKVSSFECGFESVGKIQNSFSIHFFKIMLMFVIFDLEIVMFLGL-----LVSDFSSLISFFMLM 91

                         90
                 ....*....|....*....
gi 2499259    96 SLLAASLAYEWTQKGLEWT 114
Cdd:MTH00092  92 IFIFFGFYMEWWYGKLIWV 110
ND3 MTH00060
NADH dehydrogenase subunit 3; Provisional
 35-76 1.50e-04

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177132  Cd Length: 116  Bit Score: 38.34  E-value: 1.50e-04
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|..
gi 2499259    35 SPYECGFDPMVSARLPFSMKFFLVAITFLLFDLEIALLLPLP 76
Cdd:MTH00060  39 SSFECGFFSSGLSENCFSFTYFFLLVFFVIFDLEISLLLNMP 80
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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