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Conserved domains on  [gi|24115014|ref|NP_709524|]
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acetolactate synthase 1 regulatory subunit [Shigella flexneri 2a str. 301]

Protein Classification

acetolactate synthase 1 small subunit( domain architecture ID 10793020)

acetolactate synthase 1 acts as a thiamin diphosphate (ThDP)-dependent enzyme that catalyzes the first common step in the biosynthesis of the branched-chain amino acids valine, leucine and isoleucine

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
PRK08178 PRK08178
acetolactate synthase 1 small subunit;
1-96 2.45e-63

acetolactate synthase 1 small subunit;


:

Pssm-ID: 236174  Cd Length: 96  Bit Score: 186.44  E-value: 2.45e-63
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24115014   1 MQNTTHNNVILELTVRNHPGVMTHVCGLFARRAFNVEGILCLPIQDSDKSHIWLLVNDDQRLEQMISQIAKLEDVVKVQR 80
Cdd:PRK08178  1 MQNTTHDNVILELTVRNHPGVMSHVCGLFARRAFNVEGILCLPIQDGDKSRIWLLVNDDQRLEQMISQIEKLEDVLKVRR 80
                        90
                ....*....|....*.
gi 24115014  81 NQSDPTMFNKIAVFFQ 96
Cdd:PRK08178 81 NQSDPTMFNKIAVFFQ 96
 
Name Accession Description Interval E-value
PRK08178 PRK08178
acetolactate synthase 1 small subunit;
1-96 2.45e-63

acetolactate synthase 1 small subunit;


Pssm-ID: 236174  Cd Length: 96  Bit Score: 186.44  E-value: 2.45e-63
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24115014   1 MQNTTHNNVILELTVRNHPGVMTHVCGLFARRAFNVEGILCLPIQDSDKSHIWLLVNDDQRLEQMISQIAKLEDVVKVQR 80
Cdd:PRK08178  1 MQNTTHDNVILELTVRNHPGVMSHVCGLFARRAFNVEGILCLPIQDGDKSRIWLLVNDDQRLEQMISQIEKLEDVLKVRR 80
                        90
                ....*....|....*.
gi 24115014  81 NQSDPTMFNKIAVFFQ 96
Cdd:PRK08178 81 NQSDPTMFNKIAVFFQ 96
ACT_AHAS cd04878
N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid ...
10-79 6.48e-25

N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS); ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.


Pssm-ID: 153150  Cd Length: 72  Bit Score: 88.72  E-value: 6.48e-25
                       10        20        30        40        50        60        70
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 24115014 10 ILELTVRNHPGVMTHVCGLFARRAFNVEGILCLPIQDSDKSHIWLLVN-DDQRLEQMISQIAKLEDVVKVQ 79
Cdd:cd04878  2 TLSVLVENEPGVLNRISGLFARRGFNIESLTVGPTEDPGISRITIVVEgDDDVIEQIVKQLNKLVDVLKVS 72
IlvH COG0440
Acetolactate synthase, small subunit [Amino acid transport and metabolism]; Acetolactate ...
10-79 5.45e-17

Acetolactate synthase, small subunit [Amino acid transport and metabolism]; Acetolactate synthase, small subunit is part of the Pathway/BioSystem: Isoleucine, leucine, valine biosynthesis


Pssm-ID: 440209 [Multi-domain]  Cd Length: 160  Bit Score: 70.82  E-value: 5.45e-17
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 24115014  10 ILELTVRNHPGVMTHVCGLFARRAFNVEGILCLPIQDSDKSHIWLLVN-DDQRLEQMISQIAKLEDVVKVQ 79
Cdd:COG0440   3 TISVLVENEPGVLARVAGLFSRRGYNIESLTVGPTEDPGISRMTIVVEgDERVIEQITKQLNKLIDVIKVV 73
acolac_sm TIGR00119
acetolactate synthase, small subunit; Acetolactate synthase is a heterodimeric thiamine ...
10-79 9.44e-16

acetolactate synthase, small subunit; Acetolactate synthase is a heterodimeric thiamine pyrophosphate enzyme with large and small subunits. One of the three isozymes in E. coli K12 contains a frameshift in the large subunit gene and is not expressed. acetohydroxyacid synthase is a synonym. [Amino acid biosynthesis, Pyruvate family]


Pssm-ID: 272916 [Multi-domain]  Cd Length: 157  Bit Score: 67.77  E-value: 9.44e-16
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 24115014    10 ILELTVRNHPGVMTHVCGLFARRAFNVEGILCLPIQDSDKSHIWLLVN-DDQRLEQMISQIAKLEDVVKVQ 79
Cdd:TIGR00119   3 ILSVLVENEPGVLSRVAGLFTRRGFNIESLTVGPTEDPDLSRMTIVVVgDDKVLEQITKQLNKLVDVIKVS 73
ACT pfam01842
ACT domain; This family of domains generally have a regulatory role. ACT domains are linked to ...
9-74 1.02e-10

ACT domain; This family of domains generally have a regulatory role. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. The ACT domain is found in: D-3-phosphoglycerate dehydrogenase EC:1.1.1.95, which is inhibited by serine. Aspartokinase EC:2.7.2.4, which is regulated by lysine. Acetolactate synthase small regulatory subunit, which is inhibited by valine. Phenylalanine-4-hydroxylase EC:1.14.16.1, which is regulated by phenylalanine. Prephenate dehydrogenase EC:4.2.1.51. formyltetrahydrofolate deformylase EC:3.5.1.10, which is activated by methionine and inhibited by glycine. GTP pyrophosphokinase EC:2.7.6.5


Pssm-ID: 426468 [Multi-domain]  Cd Length: 66  Bit Score: 52.31  E-value: 1.02e-10
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 24115014    9 VILELTVRNHPGVMTHVCGLFARRAFNVEGILCLPIQDSDKSHIWLLVNDDQRLEQMISQIAKLED 74
Cdd:pfam01842  1 TVLEVLVPDRPGLLARVLGALADRGINITSIEQGTSEDKGGIVFVVIVVDEEDLEEVLEALKKLEG 66
 
Name Accession Description Interval E-value
PRK08178 PRK08178
acetolactate synthase 1 small subunit;
1-96 2.45e-63

acetolactate synthase 1 small subunit;


Pssm-ID: 236174  Cd Length: 96  Bit Score: 186.44  E-value: 2.45e-63
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24115014   1 MQNTTHNNVILELTVRNHPGVMTHVCGLFARRAFNVEGILCLPIQDSDKSHIWLLVNDDQRLEQMISQIAKLEDVVKVQR 80
Cdd:PRK08178  1 MQNTTHDNVILELTVRNHPGVMSHVCGLFARRAFNVEGILCLPIQDGDKSRIWLLVNDDQRLEQMISQIEKLEDVLKVRR 80
                        90
                ....*....|....*.
gi 24115014  81 NQSDPTMFNKIAVFFQ 96
Cdd:PRK08178 81 NQSDPTMFNKIAVFFQ 96
ACT_AHAS cd04878
N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid ...
10-79 6.48e-25

N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS); ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.


Pssm-ID: 153150  Cd Length: 72  Bit Score: 88.72  E-value: 6.48e-25
                       10        20        30        40        50        60        70
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 24115014 10 ILELTVRNHPGVMTHVCGLFARRAFNVEGILCLPIQDSDKSHIWLLVN-DDQRLEQMISQIAKLEDVVKVQ 79
Cdd:cd04878  2 TLSVLVENEPGVLNRISGLFARRGFNIESLTVGPTEDPGISRITIVVEgDDDVIEQIVKQLNKLVDVLKVS 72
IlvH COG0440
Acetolactate synthase, small subunit [Amino acid transport and metabolism]; Acetolactate ...
10-79 5.45e-17

Acetolactate synthase, small subunit [Amino acid transport and metabolism]; Acetolactate synthase, small subunit is part of the Pathway/BioSystem: Isoleucine, leucine, valine biosynthesis


Pssm-ID: 440209 [Multi-domain]  Cd Length: 160  Bit Score: 70.82  E-value: 5.45e-17
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 24115014  10 ILELTVRNHPGVMTHVCGLFARRAFNVEGILCLPIQDSDKSHIWLLVN-DDQRLEQMISQIAKLEDVVKVQ 79
Cdd:COG0440   3 TISVLVENEPGVLARVAGLFSRRGYNIESLTVGPTEDPGISRMTIVVEgDERVIEQITKQLNKLIDVIKVV 73
ilvH PRK11895
acetolactate synthase 3 regulatory subunit; Reviewed
10-79 2.01e-16

acetolactate synthase 3 regulatory subunit; Reviewed


Pssm-ID: 183365 [Multi-domain]  Cd Length: 161  Bit Score: 69.33  E-value: 2.01e-16
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 24115014   10 ILELTVRNHPGVMTHVCGLFARRAFNVEGILCLPIQDSDKSHIWLLVN-DDQRLEQMISQIAKLEDVVKVQ 79
Cdd:PRK11895   4 TLSVLVENEPGVLSRVAGLFSRRGYNIESLTVGPTEDPGLSRMTIVTSgDEQVIEQITKQLNKLIDVLKVV 74
acolac_sm TIGR00119
acetolactate synthase, small subunit; Acetolactate synthase is a heterodimeric thiamine ...
10-79 9.44e-16

acetolactate synthase, small subunit; Acetolactate synthase is a heterodimeric thiamine pyrophosphate enzyme with large and small subunits. One of the three isozymes in E. coli K12 contains a frameshift in the large subunit gene and is not expressed. acetohydroxyacid synthase is a synonym. [Amino acid biosynthesis, Pyruvate family]


Pssm-ID: 272916 [Multi-domain]  Cd Length: 157  Bit Score: 67.77  E-value: 9.44e-16
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 24115014    10 ILELTVRNHPGVMTHVCGLFARRAFNVEGILCLPIQDSDKSHIWLLVN-DDQRLEQMISQIAKLEDVVKVQ 79
Cdd:TIGR00119   3 ILSVLVENEPGVLSRVAGLFTRRGFNIESLTVGPTEDPDLSRMTIVVVgDDKVLEQITKQLNKLVDVIKVS 73
ilvH CHL00100
acetohydroxyacid synthase small subunit
11-79 9.81e-13

acetohydroxyacid synthase small subunit


Pssm-ID: 214364 [Multi-domain]  Cd Length: 174  Bit Score: 60.11  E-value: 9.81e-13
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24115014   11 LELTVRNHPGVMTHVCGLFARRAFNVEGILCLPIQDSDKSHIWLLV-NDDQRLEQMISQIAKLEDVVKVQ 79
Cdd:CHL00100   5 LSVLVEDESGVLTRIAGLFARRGFNIESLAVGPAEQKGISRITMVVpGDDRTIEQLTKQLYKLVNILKVQ 74
ACT pfam01842
ACT domain; This family of domains generally have a regulatory role. ACT domains are linked to ...
9-74 1.02e-10

ACT domain; This family of domains generally have a regulatory role. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. The ACT domain is found in: D-3-phosphoglycerate dehydrogenase EC:1.1.1.95, which is inhibited by serine. Aspartokinase EC:2.7.2.4, which is regulated by lysine. Acetolactate synthase small regulatory subunit, which is inhibited by valine. Phenylalanine-4-hydroxylase EC:1.14.16.1, which is regulated by phenylalanine. Prephenate dehydrogenase EC:4.2.1.51. formyltetrahydrofolate deformylase EC:3.5.1.10, which is activated by methionine and inhibited by glycine. GTP pyrophosphokinase EC:2.7.6.5


Pssm-ID: 426468 [Multi-domain]  Cd Length: 66  Bit Score: 52.31  E-value: 1.02e-10
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 24115014    9 VILELTVRNHPGVMTHVCGLFARRAFNVEGILCLPIQDSDKSHIWLLVNDDQRLEQMISQIAKLED 74
Cdd:pfam01842  1 TVLEVLVPDRPGLLARVLGALADRGINITSIEQGTSEDKGGIVFVVIVVDEEDLEEVLEALKKLEG 66
ACT_5 pfam13710
ACT domain; ACT domains bind to amino acids and regulate associated enzyme domains. These ACT ...
19-78 8.55e-08

ACT domain; ACT domains bind to amino acids and regulate associated enzyme domains. These ACT domains are found at the C-terminus of the RelA protein.


Pssm-ID: 463962  Cd Length: 62  Bit Score: 44.88  E-value: 8.55e-08
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 24115014   19 PGVMTHVCGLFARRAFNVEGILCLPIQDSDKSHIWLLVNDDQRLEQMISQIAKLEDVVKV 78
Cdd:pfam13710  3 PGVLERVLRVVRRRGFHVTSMNMSATEDGGLVRIQLTVESDRSVELLLNQLEKLYDVVKV 62
IlvM COG3978
Acetolactate synthase small subunit, contains ACT domain [Amino acid transport and metabolism]; ...
11-79 1.85e-05

Acetolactate synthase small subunit, contains ACT domain [Amino acid transport and metabolism];


Pssm-ID: 443177  Cd Length: 75  Bit Score: 39.05  E-value: 1.85e-05
                       10        20        30        40        50        60
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 24115014 11 LELTVRNHPGVMTHVCGLFARRAFNVEGILcLPIQDSDKSHIWLLVNDDQRLEQMISQIAKLEDVVKVQ 79
Cdd:COG3978  6 LTIEARRRPGALERVLRVVRHRGFEVRSMN-MEANDGDGLNIELTVSSDRPIELLTRQLEKLYDVESVE 73
ACT cd02116
ACT domains are commonly involved in specifically binding an amino acid or other small ligand ...
11-69 1.07e-04

ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme; Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-prephenate dehydratase enzyme (P-protein), respectively. Aspartokinases typically consist of two C-terminal ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. ACT domain repeats have been shown to have nonequivalent ligand-binding sites with complex regulatory patterns such as those seen in the bifunctional enzyme, aspartokinase-homoserine dehydrogenase (ThrA). In other enzymes, such as phenylalanine hydroxylases, the ACT domain appears to function as a flexible small module providing allosteric regulation via transmission of conformational changes, these conformational changes are not necessarily initiated by regulatory ligand binding at the ACT domain itself. ACT domains are present either singularly, N- or C-terminal, or in pairs present C-terminal or between two catalytic domains. Unique to cyanobacteria are four ACT domains C-terminal to an aspartokinase domain. A few proteins are composed almost entirely of ACT domain repeats as seen in the four ACT domain protein, the ACR protein, found in higher plants; and the two ACT domain protein, the glycine cleavage system transcriptional repressor (GcvR) protein, found in some bacteria. Also seen are single ACT domain proteins similar to the Streptococcus pneumoniae ACT domain protein (uncharacterized pdb structure 1ZPV) found in both bacteria and archaea. Purportedly, the ACT domain is an evolutionarily mobile ligand binding regulatory module that has been fused to different enzymes at various times.


Pssm-ID: 153139 [Multi-domain]  Cd Length: 60  Bit Score: 36.89  E-value: 1.07e-04
                       10        20        30        40        50
               ....*....|....*....|....*....|....*....|....*....|....*....
gi 24115014 11 LELTVRNHPGVMTHVCGLFARRAFNVEGILCLPIQDSDKSHIWLLVNDDQRLEQMISQI 69
Cdd:cd02116  1 LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRTSGDGGEADIFIVVDGDGDLEKLLEAL 59
ACT_HSDH-Hom cd04881
ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine ...
11-78 5.12e-04

ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains; The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.


Pssm-ID: 153153 [Multi-domain]  Cd Length: 79  Bit Score: 35.57  E-value: 5.12e-04
                       10        20        30        40        50        60        70
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24115014 11 LELTVRNHPGVMTHVCGLFARRAFNVEGILCLPIQDSDKSHIWLLVND--DQRLEQMISQIAKLEDVVKV 78
Cdd:cd04881  3 LRLTVKDKPGVLAKITGILAEHGISIESVIQKEADGGETAPVVIVTHEtsEAALNAALAEIEALDAVQGV 72
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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