MHC class II regulatory factor RFX1 [Mus musculus]
RFX1_trans_act and RFX_DNA_binding domain-containing protein( domain architecture ID 12054117)
RFX1_trans_act and RFX_DNA_binding domain-containing protein
List of domain hits
Name | Accession | Description | Interval | E-value | |||
RFX1_trans_act | pfam04589 | RFX1 transcription activation region; The RFX family is a family of winged-helix DNA binding ... |
214-357 | 7.04e-53 | |||
RFX1 transcription activation region; The RFX family is a family of winged-helix DNA binding proteins. RFX1 is a regulatory factor essential for expression of MHC class II genes. This region is to found N terminal to the RFX DNA binding region (pfam02257) in some mammalian RFX proteins, and is thought to activate transcription when associated with DNA. Deletion analysis has identified the region 233-351 in human RFX1 as being required for maximal activation. : Pssm-ID: 461362 [Multi-domain] Cd Length: 163 Bit Score: 182.05 E-value: 7.04e-53
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RFX_DNA_binding | pfam02257 | RFX DNA-binding domain; RFX is a regulatory factor which binds to the X box of MHC class II ... |
421-498 | 1.79e-43 | |||
RFX DNA-binding domain; RFX is a regulatory factor which binds to the X box of MHC class II genes and is essential for their expression. The DNA-binding domain of RFX is the central domain of the protein and binds ssDNA as either a monomer or homodimer. It recognize X-boxes (DNA of the sequence 5'-GTNRCC(0-3N)RGYAAC-3', where N is any nucleotide, R is a purine and Y is a pyrimidine) using a highly conserved 76-residue DNA-binding domain (DBD). : Pssm-ID: 460512 Cd Length: 79 Bit Score: 151.93 E-value: 1.79e-43
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Name | Accession | Description | Interval | E-value | ||||
RFX1_trans_act | pfam04589 | RFX1 transcription activation region; The RFX family is a family of winged-helix DNA binding ... |
214-357 | 7.04e-53 | ||||
RFX1 transcription activation region; The RFX family is a family of winged-helix DNA binding proteins. RFX1 is a regulatory factor essential for expression of MHC class II genes. This region is to found N terminal to the RFX DNA binding region (pfam02257) in some mammalian RFX proteins, and is thought to activate transcription when associated with DNA. Deletion analysis has identified the region 233-351 in human RFX1 as being required for maximal activation. Pssm-ID: 461362 [Multi-domain] Cd Length: 163 Bit Score: 182.05 E-value: 7.04e-53
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RFX_DNA_binding | pfam02257 | RFX DNA-binding domain; RFX is a regulatory factor which binds to the X box of MHC class II ... |
421-498 | 1.79e-43 | ||||
RFX DNA-binding domain; RFX is a regulatory factor which binds to the X box of MHC class II genes and is essential for their expression. The DNA-binding domain of RFX is the central domain of the protein and binds ssDNA as either a monomer or homodimer. It recognize X-boxes (DNA of the sequence 5'-GTNRCC(0-3N)RGYAAC-3', where N is any nucleotide, R is a purine and Y is a pyrimidine) using a highly conserved 76-residue DNA-binding domain (DBD). Pssm-ID: 460512 Cd Length: 79 Bit Score: 151.93 E-value: 1.79e-43
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COG3378 | COG3378 | DNA primase, phage- or plasmid-associated [Mobilome: prophages, transposons]; |
425-500 | 8.55e-06 | ||||
DNA primase, phage- or plasmid-associated [Mobilome: prophages, transposons]; Pssm-ID: 442605 [Multi-domain] Cd Length: 403 Bit Score: 49.17 E-value: 8.55e-06
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rne | PRK10811 | ribonuclease E; Reviewed |
174-349 | 7.38e-03 | ||||
ribonuclease E; Reviewed Pssm-ID: 236766 [Multi-domain] Cd Length: 1068 Bit Score: 40.41 E-value: 7.38e-03
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Name | Accession | Description | Interval | E-value | ||||
RFX1_trans_act | pfam04589 | RFX1 transcription activation region; The RFX family is a family of winged-helix DNA binding ... |
214-357 | 7.04e-53 | ||||
RFX1 transcription activation region; The RFX family is a family of winged-helix DNA binding proteins. RFX1 is a regulatory factor essential for expression of MHC class II genes. This region is to found N terminal to the RFX DNA binding region (pfam02257) in some mammalian RFX proteins, and is thought to activate transcription when associated with DNA. Deletion analysis has identified the region 233-351 in human RFX1 as being required for maximal activation. Pssm-ID: 461362 [Multi-domain] Cd Length: 163 Bit Score: 182.05 E-value: 7.04e-53
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RFX_DNA_binding | pfam02257 | RFX DNA-binding domain; RFX is a regulatory factor which binds to the X box of MHC class II ... |
421-498 | 1.79e-43 | ||||
RFX DNA-binding domain; RFX is a regulatory factor which binds to the X box of MHC class II genes and is essential for their expression. The DNA-binding domain of RFX is the central domain of the protein and binds ssDNA as either a monomer or homodimer. It recognize X-boxes (DNA of the sequence 5'-GTNRCC(0-3N)RGYAAC-3', where N is any nucleotide, R is a purine and Y is a pyrimidine) using a highly conserved 76-residue DNA-binding domain (DBD). Pssm-ID: 460512 Cd Length: 79 Bit Score: 151.93 E-value: 1.79e-43
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COG3378 | COG3378 | DNA primase, phage- or plasmid-associated [Mobilome: prophages, transposons]; |
425-500 | 8.55e-06 | ||||
DNA primase, phage- or plasmid-associated [Mobilome: prophages, transposons]; Pssm-ID: 442605 [Multi-domain] Cd Length: 403 Bit Score: 49.17 E-value: 8.55e-06
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rne | PRK10811 | ribonuclease E; Reviewed |
174-349 | 7.38e-03 | ||||
ribonuclease E; Reviewed Pssm-ID: 236766 [Multi-domain] Cd Length: 1068 Bit Score: 40.41 E-value: 7.38e-03
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Blast search parameters | ||||
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