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Conserved domains on  [gi|2290863|gb|AAB65200|]
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cytochrome b, partial (mitochondrion) [Arizelocichla masukuensis roehli]

Protein Classification

cytochrome b family protein( domain architecture ID 581032)

cytochrome b family protein such as formate dehydrogenase subunit gamma or cytochrome b, a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.

Gene Ontology:  GO:0046872|GO:0016491

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
Cytochrome_b_N super family cl23723
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-94 7.62e-56

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


The actual alignment was detected with superfamily member MTH00119:

Pssm-ID: 474033 [Multi-domain]  Cd Length: 380  Bit Score: 176.63  E-value: 7.62e-56
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2290863     1 FLFAYAILRSIPNKLGGVIALAASVLVLFFIPLLHVSKLRSMTFRPLSQILFWTLVANLLILTWVGSQPVEHPFIIIGQV 80
Cdd:MTH00119 275 FLFAYAILRSIPNKLGGVLALAASILILFLMPFLHTSKQRSMTFRPLSQLLFWTLVANLLILTWIGSQPVEHPFIIIGQL 354

                         90
                 ....*....|....
gi 2290863    81 ASVSYFTIILVLFP 94
Cdd:MTH00119 355 ASILYFTILLILFP 368
 
Name Accession Description Interval E-value
CYTB MTH00119
cytochrome b; Provisional
 1-94 7.62e-56

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 176.63  E-value: 7.62e-56
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2290863     1 FLFAYAILRSIPNKLGGVIALAASVLVLFFIPLLHVSKLRSMTFRPLSQILFWTLVANLLILTWVGSQPVEHPFIIIGQV 80
Cdd:MTH00119 275 FLFAYAILRSIPNKLGGVLALAASILILFLMPFLHTSKQRSMTFRPLSQLLFWTLVANLLILTWIGSQPVEHPFIIIGQL 354

                         90
                 ....*....|....
gi 2290863    81 ASVSYFTIILVLFP 94
Cdd:MTH00119 355 ASILYFTILLILFP 368
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
1-85 4.15e-34

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 112.57  E-value: 4.15e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2290863      1 FLFAYAILRSIPNKLGGVIALAASVLVLFFIPLLHVSKLRSMTFRPLSQILFWTLVANLLILTWVGSQPVEHPFIIIGQV 80
Cdd:pfam00032  17 FLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLFKIFFWLFVVDFVVLGWLGKQPPTGPYTLLGQI 96


                  ....*
gi 2290863     81 ASVSY 85
Cdd:pfam00032  97 ATVYY 101
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-81 3.85e-23

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 86.16  E-value: 3.85e-23
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2290863    1 FLFAYAILRSIPNKLGGVIALAASVLVLFFIPLLHVSKLRSmTFRPLSQILFWTLVANLLILTWVGSQPVEHPFIIIGQV 80
Cdd:cd00290  68 FLPVYAILRAIPNKLLGVLAMAASILSLFLVPFLENSNKRS-QFRPLRPTAFWVFLAGTLVLGWLGIQPVEYPFSLILQL 146


                .
gi 2290863   81 A 81
Cdd:cd00290 147 F 147
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-94 1.60e-16

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 72.52  E-value: 1.60e-16
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2290863    1 FLFAYAILRSIP--NKLGGVIALAASVLVLFFIPLLHVSKLRSMTFRPLSQILFWTLVANLLILTWVGSQPVehPFIIIG 78
Cdd:COG1290 288 FLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVRTALGVAFIVFFIVLTILGANPP--IATLLG 365

                        90
                ....*....|....*.
gi 2290863   79 QVASVSYFTIILVLFP 94
Cdd:COG1290 366 SINTVTYFAFFLIVLP 381
 
Name Accession Description Interval E-value
CYTB MTH00119
cytochrome b; Provisional
 1-94 7.62e-56

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 176.63  E-value: 7.62e-56
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2290863     1 FLFAYAILRSIPNKLGGVIALAASVLVLFFIPLLHVSKLRSMTFRPLSQILFWTLVANLLILTWVGSQPVEHPFIIIGQV 80
Cdd:MTH00119 275 FLFAYAILRSIPNKLGGVLALAASILILFLMPFLHTSKQRSMTFRPLSQLLFWTLVANLLILTWIGSQPVEHPFIIIGQL 354

                         90
                 ....*....|....
gi 2290863    81 ASVSYFTIILVLFP 94
Cdd:MTH00119 355 ASILYFTILLILFP 368
CYTB MTH00100
cytochrome b; Provisional
 1-94 2.85e-52

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 167.12  E-value: 2.85e-52
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2290863     1 FLFAYAILRSIPNKLGGVIALAASVLVLFFIPLLHVSKLRSMTFRPLSQILFWTLVANLLILTWVGSQPVEHPFIIIGQV 80
Cdd:MTH00100 274 FLFAYAILRSIPNKLGGVLALLLSILILAIIPLLHTSKQRSMMFRPLSQCLFWLLVADLLTLTWIGGQPVEHPFIIIGQL 353

                         90
                 ....*....|....
gi 2290863    81 ASVSYFTIILVLFP 94
Cdd:MTH00100 354 ASILYFLIILILMP 367
CYTB MTH00131
cytochrome b; Provisional
 1-94 9.09e-50

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 160.97  E-value: 9.09e-50
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2290863     1 FLFAYAILRSIPNKLGGVIALAASVLVLFFIPLLHVSKLRSMTFRPLSQILFWTLVANLLILTWVGSQPVEHPFIIIGQV 80
Cdd:MTH00131 274 FLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPLTQFLFWTLVADVLILTWIGGMPVEHPFIIIGQV 353

                         90
                 ....*....|....
gi 2290863    81 ASVSYFTIILVLFP 94
Cdd:MTH00131 354 ASVLYFSLFLVLMP 367
CYTB MTH00074
cytochrome b; Provisional
 1-94 9.00e-47

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 152.91  E-value: 9.00e-47
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2290863     1 FLFAYAILRSIPNKLGGVIALAASVLVLFFIPLLHVSKLRSMTFRPLSQILFWTLVANLLILTWVGSQPVEHPFIIIGQV 80
Cdd:MTH00074 275 FLFAYAILRSIPNKLGGVLALLASILILMLIPMLHTSKQRSLMFRPLTQILFWLLVANTLILTWIGGQPVEDPFIEIGQA 354

                         90
                 ....*....|....
gi 2290863    81 ASVSYFTIILVLFP 94
Cdd:MTH00074 355 ASILYFLLFIIIIP 368
CYTB MTH00191
cytochrome b; Provisional
 1-94 2.26e-43

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 143.90  E-value: 2.26e-43
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2290863     1 FLFAYAILRSIPNKLGGVIALAASVLVLFFIPLLHVSKLRSMTFRPLSQILFWTLVANLLILTWVGSQPVEHPFIIIGQV 80
Cdd:MTH00191 271 FLFAYAILRSIPNKLGGVLALVMSILVLFLLPLLHTSKQRSNTFRPLTQVVFWLWVANFILLTWLGGQPVEDPFILLGQI 350

                         90
                 ....*....|....
gi 2290863    81 ASVSYFTIILVLFP 94
Cdd:MTH00191 351 SSFLYFFLFLLLFP 364
CYTB MTH00034
cytochrome b; Validated
 1-94 3.76e-42

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 141.00  E-value: 3.76e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2290863     1 FLFAYAILRSIPNKLGGVIALAASVLVLFFIPLLHVSKLRSMTFRPLSQILFWTLVANLLILTWVGSQPVEHPFIIIGQV 80
Cdd:MTH00034 274 FLFAYAILRSIPNKLGGVIALVAAILVLFLVPILHTSNNQSSTFRPLSQIAFWLLIATFFILTWIGSQPVEYPFILLGQV 353

                         90
                 ....*....|....
gi 2290863    81 ASVSYFTIILVLFP 94
Cdd:MTH00034 354 ASVLYFSLFLFFFP 367
CYTB MTH00145
cytochrome b; Provisional
 1-92 1.69e-40

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 136.57  E-value: 1.69e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2290863     1 FLFAYAILRSIPNKLGGVIALAASVLVLFFIPLLHVSKLRSMTFRPLSQILFWTLVANLLILTWVGSQPVEHPFIIIGQV 80
Cdd:MTH00145 275 FLFAYAILRSIPNKLGGVIALVMSIVILFFLPLLHVGKFRSLSFYPLNQVLFWIFVGNFFILTWIGACPVEEPYETIGQV 354

                         90
                 ....*....|..
gi 2290863    81 ASVSYFTIILVL 92
Cdd:MTH00145 355 FTVLYFLFFLIL 366
CYTB MTH00156
cytochrome b; Provisional
 1-93 1.56e-37

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 128.36  E-value: 1.56e-37
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2290863     1 FLFAYAILRSIPNKLGGVIALAASVLVLFFIPLLHVSKLRSMTFRPLSQILFWTLVANLLILTWVGSQPVEHPFIIIGQV 80
Cdd:MTH00156 264 FLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSKFRGNQFYPINKILFWIFVNIVILLTWIGARPVEEPYILTGQI 343

                         90
                 ....*....|...
gi 2290863    81 ASVSYFTIILVLF 93
Cdd:MTH00156 344 LTILYFLYFIINP 356
CYTB MTH00022
cytochrome b; Validated
 1-94 9.23e-37

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 127.12  E-value: 9.23e-37
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2290863     1 FLFAYAILRSIPNKLGGVIALAASVLVLFFIPLLHVSKLRSMTFRPLSQILFWTLVANLLILTWVGSQPVEHPFIIIGQV 80
Cdd:MTH00022 273 FLFAYAILRSIPNKLGGVVAMFFSILILFFLPLLHTSWLRGLTFRPLGRMAFWFLIVDFILLTWIGSQVVEEPFILIGQL 352

                         90
                 ....*....|....
gi 2290863    81 ASVSYFTIILVLFP 94
Cdd:MTH00022 353 LSFFYFFYFLVLIP 366
CYTB MTH00053
cytochrome b; Provisional
 1-94 1.55e-36

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 126.36  E-value: 1.55e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2290863     1 FLFAYAILRSIPNKLGGVIALAASVLVLFFIPLLHVSKLRSMTFRPLSQILFWTLVANLLILTWVGSQPVEHPFIIIGQV 80
Cdd:MTH00053 275 FLFAYAILRSIPNKLGGVVALVFSILVLFFLPYLHKSRFRGLSFRPLSKILFWFLVGDFFLLTWIGGQPVEEPYILIGQI 354

                         90
                 ....*....|....
gi 2290863    81 ASVSYFTIILVLFP 94
Cdd:MTH00053 355 ASIFYFAYFLILMP 368
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
1-85 4.15e-34

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 112.57  E-value: 4.15e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2290863      1 FLFAYAILRSIPNKLGGVIALAASVLVLFFIPLLHVSKLRSMTFRPLSQILFWTLVANLLILTWVGSQPVEHPFIIIGQV 80
Cdd:pfam00032  17 FLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLFKIFFWLFVVDFVVLGWLGKQPPTGPYTLLGQI 96


                  ....*
gi 2290863     81 ASVSY 85
Cdd:pfam00032  97 ATVYY 101
CYTB MTH00016
cytochrome b; Validated
 1-92 5.65e-34

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 119.78  E-value: 5.65e-34
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2290863     1 FLFAYAILRSIPNKLGGVIALAASVLVLFFIPLLHVSKLRSMTFRPLSQILFWTLVANLLILTWVGSQPVEHPFIIIGQV 80
Cdd:MTH00016 275 FLWAYAILRSIPNKLGGVVAMFASILILFFLPFIFKQKFRGLSFYPLNQILFWLLVSNFLLLTWIGGRPVEPPYEFLGQI 354

                         90
                 ....*....|..
gi 2290863    81 ASVSYFTIILVL 92
Cdd:MTH00016 355 FTVFYFFYFMIN 366
CYTB MTH00224
cytochrome b; Provisional
 1-91 1.04e-27

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 103.08  E-value: 1.04e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2290863     1 FLFAYAILRSIPNKLGGVIALAASVLVLFFIPLLHVSKLRSMTFRPLSQILFWTLVANLLILTWVGSQPVEHPFIIIGQV 80
Cdd:MTH00224 275 FLWMYAILRSIPNKLGGVVALFAAILILFILPLTSVMNKRSLPFYPLNQLLFWLLVTSWAILTWIGGRPVEDPFEGIGQV 354

                         90
                 ....*....|.
gi 2290863    81 ASVSYFTIILV 91
Cdd:MTH00224 355 FTILYFSYFII 365
CYTB MTH00033
cytochrome b; Provisional
 1-94 3.89e-24

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 93.46  E-value: 3.89e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2290863     1 FLFAYAILRSIPNKLGGVIALAASVLVLFFIPLLHVSKLRSMTFRPLSQILFWTLVANLLILTWVGSQPV-EHPFIIIGQ 79
Cdd:MTH00033 273 FLFAYAILRSIPNKLGGVLALFASILVLLLMPILDRSKIRSLTFNPTGKFFFWFIVGDFIILTWIGSAPAgADPYVLIGR 352

                         90
                 ....*....|....*
gi 2290863    80 VASVSYFTIILVLFP 94
Cdd:MTH00033 353 IATIFYFGYFLVLVP 367
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-81 3.85e-23

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 86.16  E-value: 3.85e-23
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2290863    1 FLFAYAILRSIPNKLGGVIALAASVLVLFFIPLLHVSKLRSmTFRPLSQILFWTLVANLLILTWVGSQPVEHPFIIIGQV 80
Cdd:cd00290  68 FLPVYAILRAIPNKLLGVLAMAASILSLFLVPFLENSNKRS-QFRPLRPTAFWVFLAGTLVLGWLGIQPVEYPFSLILQL 146


                .
gi 2290863   81 A 81
Cdd:cd00290 147 F 147
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-94 1.60e-16

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 72.52  E-value: 1.60e-16
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2290863    1 FLFAYAILRSIP--NKLGGVIALAASVLVLFFIPLLHVSKLRSMTFRPLSQILFWTLVANLLILTWVGSQPVehPFIIIG 78
Cdd:COG1290 288 FLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVRTALGVAFIVFFIVLTILGANPP--IATLLG 365

                        90
                ....*....|....*.
gi 2290863   79 QVASVSYFTIILVLFP 94
Cdd:COG1290 366 SINTVTYFAFFLIVLP 381
CYTB MTH00086
cytochrome b; Provisional
 1-93 4.05e-15

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 68.43  E-value: 4.05e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2290863     1 FLFAYAILRSIPNKLGGVIALAASVLVLFFIPLLHVSklrSMTFRPLSQILFWTLVANLLILTWVGSQPVEHPFIIIGQV 80
Cdd:MTH00086 262 FLFAYAILRAIPNKVLGVIALLMSIVVFYFFIFVNNY---TSCLNKLNKFLVFSFIVVNVILSWLGQCLVEYPFLFLSQI 338

                         90
                 ....*....|...
gi 2290863    81 ASVSYFTIILVLF 93
Cdd:MTH00086 339 FSFIYFFLILLML 351
CYTB MTH00046
cytochrome b; Validated
 1-84 2.36e-07

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 46.51  E-value: 2.36e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2290863     1 FLFAYAILRSIPNKLGGVIaLAASVLVLFFIPLLHVSKLRSMtfrpLSQILFWTLVANLLILTWVGSQPVEHPFIIIGQV 80
Cdd:MTH00046 266 FLAFYAMLRSINSKIGGLV-LVLSFLFFLWVPTFNGSSVYSV----WRQVNFWLIVSLFFSLSYLGGCHPEYPYLLISQL 340


                 ....
gi 2290863    81 ASVS 84
Cdd:MTH00046 341 FSVL 344
petD CHL00058
cytochrome b6/f complex subunit IV
 7-57 5.09e-03

cytochrome b6/f complex subunit IV


Pssm-ID: 176998  Cd Length: 160  Bit Score: 33.82  E-value: 5.09e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....
gi 2290863     7 ILRSIPNKLGGVIALAASVLVLFFIPLL-HVSKLRSMTFRPLSQI--LFWTLVA 57
Cdd:CHL00058  87 ILRTVPNKLLGVLLMASVPAGLLTVPFLeNVNKFQNPFRRPVATTvfLIGTAVA 140
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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