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Conserved domains on  [gi|22797305|emb|CAC79899|]
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cytochrome b, partial (mitochondrion) [Strix rufipes]

Protein Classification

cytochrome b( domain architecture ID 11475906)

cytochrome b is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), a respiratory chain that generates an electrochemical potential coupled to ATP synthesis

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CYTB MTH00119
cytochrome b; Provisional
 1-347 0e+00

cytochrome b; Provisional


:

Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 668.92  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22797305    1 FGSLLGICLATQIITGLLLAAHYTADSTLAFASVSHTCRNVQYGWLLRNLHANGASLFFICIYLHIGRGLYYGSYLYKET 80
Cdd:MTH00119  34 FGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLYKET 113

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22797305   81 WNTGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFLIASL 160
Cdd:MTH00119 114 WNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGL 193

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22797305  161 TLIHLTFLHDSGSNNPLGISSDCDKIPFHPYFSMKDILGLALMLLPLMTLALFSPNLLGDPENFTPANPLITPPHIKPEW 240
Cdd:MTH00119 194 TLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLLTLALFSPNLLGDPENFTPANPLVTPPHIKPEW 273

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22797305  241 YFLFAYAILRSIPNKLGGVLALAASVLILLLIPLLHKSKQRTMTFRPLSQLLFWALTTNLLILTWVGSQPVEHPFIIIGQ 320
Cdd:MTH00119 274 YFLFAYAILRSIPNKLGGVLALAASILILFLMPFLHTSKQRSMTFRPLSQLLFWTLVANLLILTWIGSQPVEHPFIIIGQ 353

                        330       340
                 ....*....|....*....|....*..
gi 22797305  321 LASLTYFTTILILFPTVSTLENKL*NY 347
Cdd:MTH00119 354 LASILYFTILLILFPLLGALENKMLNY 380
 
Name Accession Description Interval E-value
CYTB MTH00119
cytochrome b; Provisional
 1-347 0e+00

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 668.92  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22797305    1 FGSLLGICLATQIITGLLLAAHYTADSTLAFASVSHTCRNVQYGWLLRNLHANGASLFFICIYLHIGRGLYYGSYLYKET 80
Cdd:MTH00119  34 FGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLYKET 113

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22797305   81 WNTGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFLIASL 160
Cdd:MTH00119 114 WNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGL 193

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22797305  161 TLIHLTFLHDSGSNNPLGISSDCDKIPFHPYFSMKDILGLALMLLPLMTLALFSPNLLGDPENFTPANPLITPPHIKPEW 240
Cdd:MTH00119 194 TLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLLTLALFSPNLLGDPENFTPANPLVTPPHIKPEW 273

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22797305  241 YFLFAYAILRSIPNKLGGVLALAASVLILLLIPLLHKSKQRTMTFRPLSQLLFWALTTNLLILTWVGSQPVEHPFIIIGQ 320
Cdd:MTH00119 274 YFLFAYAILRSIPNKLGGVLALAASILILFLMPFLHTSKQRSMTFRPLSQLLFWTLVANLLILTWIGSQPVEHPFIIIGQ 353

                        330       340
                 ....*....|....*....|....*..
gi 22797305  321 LASLTYFTTILILFPTVSTLENKL*NY 347
Cdd:MTH00119 354 LASILYFTILLILFPLLGALENKMLNY 380
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-341 7.64e-115

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 338.30  E-value: 7.64e-115
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22797305   1 FGSLLGICLATQIITGLLLAAHYTADSTLAFASVSHTCRNVQYGWLLRNLHANGASLFFICIYLHIGRGLYYGSYlyKE- 79
Cdd:COG1290  42 FGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGAY--KKp 119

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22797305  80 ---TWNTGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALH-FLLPF 155
Cdd:COG1290 120 relNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDATLNRFFALHvLLLPA 199

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22797305 156 LIASLTLIHLTFLHDSGSNNPLGI----SSDCDKIPFHPYFSMKDILGLALMLLPLMTLALFSPNllGDPENFTPANPLI 231
Cdd:COG1290 200 LLLALVVLHLWLLHRHGHNNPPGPerkkTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFFFPI--NPPPNYGPANPLA 277

                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22797305 232 TPPHIKPEWYFLFAYAILRSIP--NKLGGVLALAASVLILLLIPLLHKSKQRTMTFRPLSQLLFWALTTNLLILTWVGSQ 309
Cdd:COG1290 278 TPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVRTALGVAFIVFFIVLTILGAN 357

                       330       340       350
                ....*....|....*....|....*....|..
gi 22797305 310 PVehPFIIIGQLASLTYFTTILILFPTVSTLE 341
Cdd:COG1290 358 PP--IATLLGSINTVTYFAFFLIVLPILAFIE 387
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-174 1.91e-85

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 256.53  E-value: 1.91e-85
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22797305   1 FGSLLGICLATQIITGLLLAAHYTADSTLAFASVSHTCRNVQYGWLLRNLHANGASLFFICIYLHIGRGLYYGSY--LYK 78
Cdd:cd00284  25 FGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYYGSYkkPRE 104

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22797305  79 ETWNTGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFLIA 158
Cdd:cd00284 105 LTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWGGFSVDNATLTRFFALHFLLPFIIA 184

                       170
                ....*....|....*.
gi 22797305 159 SLTLIHLTFLHDSGSN 174
Cdd:cd00284 185 VIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
1-172 1.54e-74

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 228.42  E-value: 1.54e-74
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22797305     1 FGSLLGICLATQIITGLLLAAHYTADSTLAFASVSHTCRNVQYGWLLRNLHANGASLFFICIYLHIGRGLYYG--SYLYK 78
Cdd:pfam00033  16 FGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIFRGLYYGgfSYPRE 95

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22797305    79 ETWNTGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFLIA 158
Cdd:pfam00033  96 LTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATLTRFFSLHFLLPFILA 175

                         170
                  ....*....|....
gi 22797305   159 SLTLIHLTFLHDSG 172
Cdd:pfam00033 176 ILMLLHLLFLHETG 189
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 226-264 4.96e-08

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 51.72  E-value: 4.96e-08
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 22797305   226 PANPLITPPHIKPEWYFLFAYAILRSIPNKLGGVLALAA 264
Cdd:TIGR01156  65 PANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAA 103
 
Name Accession Description Interval E-value
CYTB MTH00119
cytochrome b; Provisional
 1-347 0e+00

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 668.92  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22797305    1 FGSLLGICLATQIITGLLLAAHYTADSTLAFASVSHTCRNVQYGWLLRNLHANGASLFFICIYLHIGRGLYYGSYLYKET 80
Cdd:MTH00119  34 FGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLYKET 113

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22797305   81 WNTGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFLIASL 160
Cdd:MTH00119 114 WNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGL 193

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22797305  161 TLIHLTFLHDSGSNNPLGISSDCDKIPFHPYFSMKDILGLALMLLPLMTLALFSPNLLGDPENFTPANPLITPPHIKPEW 240
Cdd:MTH00119 194 TLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLLTLALFSPNLLGDPENFTPANPLVTPPHIKPEW 273

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22797305  241 YFLFAYAILRSIPNKLGGVLALAASVLILLLIPLLHKSKQRTMTFRPLSQLLFWALTTNLLILTWVGSQPVEHPFIIIGQ 320
Cdd:MTH00119 274 YFLFAYAILRSIPNKLGGVLALAASILILFLMPFLHTSKQRSMTFRPLSQLLFWTLVANLLILTWIGSQPVEHPFIIIGQ 353

                        330       340
                 ....*....|....*....|....*..
gi 22797305  321 LASLTYFTTILILFPTVSTLENKL*NY 347
Cdd:MTH00119 354 LASILYFTILLILFPLLGALENKMLNY 380
CYTB MTH00100
cytochrome b; Provisional
 1-344 0e+00

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 600.09  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22797305    1 FGSLLGICLATQIITGLLLAAHYTADSTLAFASVSHTCRNVQYGWLLRNLHANGASLFFICIYLHIGRGLYYGSYLYKET 80
Cdd:MTH00100  33 FGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGASMFFICLFLHVGRGLYYGSYLFLET 112

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22797305   81 WNTGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFLIASL 160
Cdd:MTH00100 113 WNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFHFILPFIITAL 192

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22797305  161 TLIHLTFLHDSGSNNPLGISSDCDKIPFHPYFSMKDILGLALMLLPLMTLALFSPNLLGDPENFTPANPLITPPHIKPEW 240
Cdd:MTH00100 193 AMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLMLLVLFSPDLLGDPDNYTPANPLNTPPHIKPEW 272

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22797305  241 YFLFAYAILRSIPNKLGGVLALAASVLILLLIPLLHKSKQRTMTFRPLSQLLFWALTTNLLILTWVGSQPVEHPFIIIGQ 320
Cdd:MTH00100 273 YFLFAYAILRSIPNKLGGVLALLLSILILAIIPLLHTSKQRSMMFRPLSQCLFWLLVADLLTLTWIGGQPVEHPFIIIGQ 352

                        330       340
                 ....*....|....*....|....
gi 22797305  321 LASLTYFTTILILFPTVSTLENKL 344
Cdd:MTH00100 353 LASILYFLIILILMPIASLIENNL 376
CYTB MTH00131
cytochrome b; Provisional
 1-347 0e+00

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 598.17  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22797305    1 FGSLLGICLATQIITGLLLAAHYTADSTLAFASVSHTCRNVQYGWLLRNLHANGASLFFICIYLHIGRGLYYGSYLYKET 80
Cdd:MTH00131  33 FGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLYKET 112

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22797305   81 WNTGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFLIASL 160
Cdd:MTH00131 113 WNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQWIWGGFSVDNATLTRFFAFHFLFPFVIAAA 192

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22797305  161 TLIHLTFLHDSGSNNPLGISSDCDKIPFHPYFSMKDILGLALMLLPLMTLALFSPNLLGDPENFTPANPLITPPHIKPEW 240
Cdd:MTH00131 193 TILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLALTSLALFSPNLLGDPDNFTPANPLVTPPHIKPEW 272

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22797305  241 YFLFAYAILRSIPNKLGGVLALAASVLILLLIPLLHKSKQRTMTFRPLSQLLFWALTTNLLILTWVGSQPVEHPFIIIGQ 320
Cdd:MTH00131 273 YFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPLTQFLFWTLVADVLILTWIGGMPVEHPFIIIGQ 352

                        330       340
                 ....*....|....*....|....*..
gi 22797305  321 LASLTYFTTILILFPTVSTLENKL*NY 347
Cdd:MTH00131 353 VASVLYFSLFLVLMPLAGWLENKALEW 379
CYTB MTH00074
cytochrome b; Provisional
 1-347 0e+00

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 580.10  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22797305    1 FGSLLGICLATQIITGLLLAAHYTADSTLAFASVSHTCRNVQYGWLLRNLHANGASLFFICIYLHIGRGLYYGSYLYKET 80
Cdd:MTH00074  34 FGSLLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMRNIHANGASFFFICIYLHIGRGLYYGSYMYKET 113

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22797305   81 WNTGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFLIASL 160
Cdd:MTH00074 114 WNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDTLVQWIWGGFSVDKATLTRFFAFHFLLPFLIAGA 193

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22797305  161 TLIHLTFLHDSGSNNPLGISSDCDKIPFHPYFSMKDILGLALMLLPLMTLALFSPNLLGDPENFTPANPLITPPHIKPEW 240
Cdd:MTH00074 194 SIIHLLFLHETGSNNPTGLNSNPDKVPFHPYFSYKDLLGFLIMLTALALLSLFSPNLLGDPDNFTPANPLVTPPHIQPEW 273

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22797305  241 YFLFAYAILRSIPNKLGGVLALAASVLILLLIPLLHKSKQRTMTFRPLSQLLFWALTTNLLILTWVGSQPVEHPFIIIGQ 320
Cdd:MTH00074 274 YFLFAYAILRSIPNKLGGVLALLASILILMLIPMLHTSKQRSLMFRPLTQILFWLLVANTLILTWIGGQPVEDPFIEIGQ 353

                        330       340
                 ....*....|....*....|....*..
gi 22797305  321 LASLTYFTTILILFPTVSTLENKL*NY 347
Cdd:MTH00074 354 AASILYFLLFIIIIPLTGWLENKLLKW 380
CYTB MTH00191
cytochrome b; Provisional
 1-335 0e+00

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 563.38  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22797305    1 FGSLLGICLATQIITGLLLAAHYTADSTLAFASVSHTCRNVQYGWLLRNLHANGASLFFICIYLHIGRGLYYGSYLYKET 80
Cdd:MTH00191  30 FGSLLGLCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIHANGASFFFICIYLHIGRGLYYGSYLNKET 109

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22797305   81 WNTGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFLIASL 160
Cdd:MTH00191 110 WNVGVILLILSMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGDDLVQWLWGGFSVDNATLTRFFTFHFLLPFLIAAL 189

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22797305  161 TLIHLTFLHDSGSNNPLGISSDCDKIPFHPYFSMKDILGLALMLLPLMTLALFSPNLLGDPENFTPANPLITPPHIKPEW 240
Cdd:MTH00191 190 SLIHLLFLHETGSNNPLGLNSDSDKIPFHPYFSYKDILGFFILLFLLLFLVLFSPNLLGDPENFIPANPLVTPVHIKPEW 269

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22797305  241 YFLFAYAILRSIPNKLGGVLALAASVLILLLIPLLHKSKQRTMTFRPLSQLLFWALTTNLLILTWVGSQPVEHPFIIIGQ 320
Cdd:MTH00191 270 YFLFAYAILRSIPNKLGGVLALVMSILVLFLLPLLHTSKQRSNTFRPLTQVVFWLWVANFILLTWLGGQPVEDPFILLGQ 349

                        330
                 ....*....|....*
gi 22797305  321 LASLTYFTTILILFP 335
Cdd:MTH00191 350 ISSFLYFFLFLLLFP 364
CYTB MTH00156
cytochrome b; Provisional
 1-334 0e+00

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 557.47  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22797305    1 FGSLLGICLATQIITGLLLAAHYTADSTLAFASVSHTCRNVQYGWLLRNLHANGASLFFICIYLHIGRGLYYGSYLYKET 80
Cdd:MTH00156  23 FGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFFFICIYLHIGRGIYYGSYKLKHT 102

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22797305   81 WNTGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFLIASL 160
Cdd:MTH00156 103 WMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSVDNATLTRFFTFHFLLPFIILAM 182

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22797305  161 TLIHLTFLHDSGSNNPLGISSDCDKIPFHPYFSMKDILGLALMLLPLMTLALFSPNLLGDPENFTPANPLITPPHIKPEW 240
Cdd:MTH00156 183 VMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLLGDPENFIPANPLVTPVHIQPEW 262

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22797305  241 YFLFAYAILRSIPNKLGGVLALAASVLILLLIPLLHKSKQRTMTFRPLSQLLFWALTTNLLILTWVGSQPVEHPFIIIGQ 320
Cdd:MTH00156 263 YFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSKFRGNQFYPINKILFWIFVNIVILLTWIGARPVEEPYILTGQ 342

                        330
                 ....*....|....
gi 22797305  321 LASLTYFTTILILF 334
Cdd:MTH00156 343 ILTILYFLYFIINP 356
CYTB MTH00145
cytochrome b; Provisional
 1-347 0e+00

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 537.18  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22797305    1 FGSLLGICLATQIITGLLLAAHYTADSTLAFASVSHTCRNVQYGWLLRNLHANGASLFFICIYLHIGRGLYYGSYLYKET 80
Cdd:MTH00145  34 FGSLLGLCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLLRSLHANGASFFFICIYLHIGRGLYYGSYLMQHT 113

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22797305   81 WNTGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFLIASL 160
Cdd:MTH00145 114 WNIGVTLLLLSMGTAFLGYVLPWGQMSFWGATVITNLLSAIPYVGKMLVEWVWGGFSVGNATLKRFFSLHFLLPFVILGL 193

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22797305  161 TLIHLTFLHDSGSNNPLGISSDCDKIPFHPYFSMKDILGLALMLLPLMTLALFSPNLLGDPENFTPANPLITPPHIKPEW 240
Cdd:MTH00145 194 SVLHLLFLHETGSNNPLGLDSDGDKVPFHPYYTIKDLVGFVVLLFLLVFLVLFFPNLLGDPENFIPANPMVTPVHIQPEW 273

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22797305  241 YFLFAYAILRSIPNKLGGVLALAASVLILLLIPLLHKSKQRTMTFRPLSQLLFWALTTNLLILTWVGSQPVEHPFIIIGQ 320
Cdd:MTH00145 274 YFLFAYAILRSIPNKLGGVIALVMSIVILFFLPLLHVGKFRSLSFYPLNQVLFWIFVGNFFILTWIGACPVEEPYETIGQ 353

                        330       340
                 ....*....|....*....|....*..
gi 22797305  321 LASLTYFTTILILfPTVSTLENKL*NY 347
Cdd:MTH00145 354 VFTVLYFLFFLIL-PLVQKLWDNILDY 379
CYTB MTH00034
cytochrome b; Validated
 1-346 0e+00

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 534.29  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22797305    1 FGSLLGICLATQIITGLLLAAHYTADSTLAFASVSHTCRNVQYGWLLRNLHANGASLFFICIYLHIGRGLYYGSYLYKET 80
Cdd:MTH00034  33 FGSLLGLCLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIHANGASLFFICLYFHIGRGLYYGSYVNIET 112

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22797305   81 WNTGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFLIASL 160
Cdd:MTH00034 113 WNIGVILFLLTMLTAFVGYVLPWGQMSFWAATVITNLVSAVPYIGTDIVQWIWGGFSVDNATLTRFFAFHFLFPFIIAAL 192

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22797305  161 TLIHLTFLHDSGSNNPLGISSDCDKIPFHPYFSMKDILGLALMLLPLMTLALFSPNLLGDPENFTPANPLITPPHIKPEW 240
Cdd:MTH00034 193 SIIHLLFLHQTGSNNPTGLNSNYDKVPFHTYFTTKDLVGFLILFAALSSLALLFPTALNDPENFIPANPLVTPPHIQPEW 272

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22797305  241 YFLFAYAILRSIPNKLGGVLALAASVLILLLIPLLHKSKQRTMTFRPLSQLLFWALTTNLLILTWVGSQPVEHPFIIIGQ 320
Cdd:MTH00034 273 YFLFAYAILRSIPNKLGGVIALVAAILVLFLVPILHTSNNQSSTFRPLSQIAFWLLIATFFILTWIGSQPVEYPFILLGQ 352

                        330       340
                 ....*....|....*....|....*.
gi 22797305  321 LASLTYFTTILILFPTVSTLENKL*N 346
Cdd:MTH00034 353 VASVLYFSLFLFFFPLISYLENKLIF 378
CYTB MTH00016
cytochrome b; Validated
 1-344 0e+00

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 506.91  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22797305    1 FGSLLGICLATQIITGLLLAAHYTADSTLAFASVSHTCRNVQYGWLLRNLHANGASLFFICIYLHIGRGLYYGSYLYKET 80
Cdd:MTH00016  34 FGSLLGLCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLLRNLHANGASFFFICLYLHIGRGIYYGSYFLMET 113

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22797305   81 WNTGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFLIASL 160
Cdd:MTH00016 114 WNIGVILLLLTMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGKMLVQWLWGGFSVDNATLTRFFALHFLLPFVIAAL 193

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22797305  161 TLIHLTFLHDSGSNNPLGISSDCDKIPFHPYFSMKDILGLALMLLPLMTLALFSPNLLGDPENFTPANPLITPPHIKPEW 240
Cdd:MTH00016 194 SMIHLLFLHQTGSNNPLGVNSNSDKVPFHPYYTSKDIVGFIVMLFLLLSVVLLWPNILGDPENFIPANPLVTPTHIKPEW 273

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22797305  241 YFLFAYAILRSIPNKLGGVLALAASVLILLLIPLLHKSKQRTMTFRPLSQLLFWALTTNLLILTWVGSQPVEHPFIIIGQ 320
Cdd:MTH00016 274 YFLWAYAILRSIPNKLGGVVAMFASILILFFLPFIFKQKFRGLSFYPLNQILFWLLVSNFLLLTWIGGRPVEPPYEFLGQ 353

                        330       340
                 ....*....|....*....|....
gi 22797305  321 LASLTYFtTILILFPTVSTLENKL 344
Cdd:MTH00016 354 IFTVFYF-FYFMINPLLMKLWDKL 376
CYTB MTH00022
cytochrome b; Validated
 1-344 9.07e-166

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 467.26  E-value: 9.07e-166
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22797305    1 FGSLLGICLATQIITGLLLAAHYTADSTLAFASVSHTCRNVQYGWLLRNLHANGASLFFICIYLHIGRGLYYGSYLYKET 80
Cdd:MTH00022  32 FGSLLGLCLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYLHANGASLFFLCLYIHIGRGLYYGGYLKFHV 111

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22797305   81 WNTGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFLIASL 160
Cdd:MTH00022 112 WNVGVVIFLLTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTDIVQWVWGGFSVSNATLNRFFSLHFLFPFILAFL 191

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22797305  161 TLIHLTFLHDSGSNNPLGISSDCDKIPFHPYFSMKDILGLALMLLPLMTLALFSPNLLGDPENFTPANPLITPPHIKPEW 240
Cdd:MTH00022 192 VIVHLIYLHVDGSNNPIGLNSSVDKVSFHVYYTSKDWYGIVVLFFLLSFIVYFAPNLLGDPENFIQANSLVTPVHIQPEW 271

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22797305  241 YFLFAYAILRSIPNKLGGVLALAASVLILLLIPLLHKSKQRTMTFRPLSQLLFWALTTNLLILTWVGSQPVEHPFIIIGQ 320
Cdd:MTH00022 272 YFLFAYAILRSIPNKLGGVVAMFFSILILFFLPLLHTSWLRGLTFRPLGRMAFWFLIVDFILLTWIGSQVVEEPFILIGQ 351

                        330       340
                 ....*....|....*....|....
gi 22797305  321 LASLTYFTTILILFPTVSTLENKL 344
Cdd:MTH00022 352 LLSFFYFFYFLVLIPLLGELENQL 375
CYTB MTH00053
cytochrome b; Provisional
 1-346 4.20e-165

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 465.72  E-value: 4.20e-165
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22797305    1 FGSLLGICLATQIITGLLLAAHYTADSTLAFASVSHTCRNVQYGWLLRNLHANGASLFFICIYLHIGRGLYYGSYLYKET 80
Cdd:MTH00053  34 FGSLLGFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFILRYLHANGASMFFLCVYFHIGRGIYYGSYTKIIV 113

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22797305   81 WNTGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFLIASL 160
Cdd:MTH00053 114 WNVGVLIFLLMILTAFIGYVLPWGQMSFWAATVITNLLSAIPYVGDDIVRWVWGGFSVSNATLNRFYSLHYLLPFILAGL 193

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22797305  161 TLIHLTFLHDSGSNNPLGISSDCDKIPFHPYFSMKDILGLALMLLPLMTLALFSPNLLGDPENFTPANPLITPPHIKPEW 240
Cdd:MTH00053 194 ALVHLIALHEDGSNNPIGVRSDIDKIPFHYYYVLKDLYGAVILLIILSIIVFLFPYSLGDAENFKQANPLVTPVHIKPEW 273

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22797305  241 YFLFAYAILRSIPNKLGGVLALAASVLILLLIPLLHKSKQRTMTFRPLSQLLFWALTTNLLILTWVGSQPVEHPFIIIGQ 320
Cdd:MTH00053 274 YFLFAYAILRSIPNKLGGVVALVFSILVLFFLPYLHKSRFRGLSFRPLSKILFWFLVGDFFLLTWIGGQPVEEPYILIGQ 353

                        330       340
                 ....*....|....*....|....*.
gi 22797305  321 LASLTYFTTILILFPTVSTLENKL*N 346
Cdd:MTH00053 354 IASIFYFAYFLILMPLAGYLENKLLK 379
CYTB MTH00224
cytochrome b; Provisional
 1-346 2.71e-155

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 440.90  E-value: 2.71e-155
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22797305    1 FGSLLGICLATQIITGLLLAAHYTADSTLAFASVSHTCRNVQYGWLLRNLHANGASLFFICIYLHIGRGLYYGSYLYKET 80
Cdd:MTH00224  34 YGSLLGLCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLLRSIHANGASMFFLFIYLHVGRGLYYGSFNLSET 113

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22797305   81 WNTGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFLIASL 160
Cdd:MTH00224 114 WNIGVILFILTMATAFLGYVLPWGQMSFWGATVITNLFSAIPYIGKDLVEWIWGGFAVDNATLNRFFSFHFLLPFAIMGA 193

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22797305  161 TLIHLTFLHDSGSNNPLGISSDCDKIPFHPYFSMKDILGLALMLLPLMTLALFSPNLLGDPENFTPANPLITPPHIKPEW 240
Cdd:MTH00224 194 TILHIMFLHQTGSNNPIGINADSARIPFHPYYSIKDALGYLIAILLLSLMVLFEPNLFTDPENFLMANPLVTPIHIKPEW 273

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22797305  241 YFLFAYAILRSIPNKLGGVLALAASVLILLLIPLLHKSKQRTMTFRPLSQLLFWALTTNLLILTWVGSQPVEHPFIIIGQ 320
Cdd:MTH00224 274 YFLWMYAILRSIPNKLGGVVALFAAILILFILPLTSVMNKRSLPFYPLNQLLFWLLVTSWAILTWIGGRPVEDPFEGIGQ 353

                        330       340
                 ....*....|....*....|....*.
gi 22797305  321 LASLTYFtTILILFPTVSTLENKL*N 346
Cdd:MTH00224 354 VFTILYF-SYFIISPAISKLWDDLLN 378
CYTB MTH00033
cytochrome b; Provisional
 1-347 1.76e-122

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 357.71  E-value: 1.76e-122
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22797305    1 FGSLLGICLATQIITGLLLAAHYTADSTLAFASVSHTCRNVQYGWLLRNLHANGASLFFICIYLHIGRGLYYGSYLYKET 80
Cdd:MTH00033  30 FGSLLCLCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASLFFICVYCHIGRGLYYGGYSRVLT 109

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22797305   81 WNTGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFLIASL 160
Cdd:MTH00033 110 WIVGVLIFFIMMLTAFIGYVLPWGQMSFWAATVITNLVSAIPSVGGSIVEWIWGGFSVSNCTLNRFFSLHYLLPFVLVGL 189

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22797305  161 TLIHLTFLHDSGSNNPLGISSDCDKIPFHPYFSMKDILGLALMLLPLMTLALFS--PNLLGDPENFTPANPLITPPHIKP 238
Cdd:MTH00033 190 VLAHLLTLHEKGSNEPLGLVGLSDRTAFHVYFTIKDILGFLILFGVFVIIGIEPriETLLQDPENFIQANPLVTPVHIQP 269

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22797305  239 EWYFLFAYAILRSIPNKLGGVLALAASVLILLLIPLLHKSKQRTMTFRPLSQLLFWALTTNLLILTWVGSQPV-EHPFII 317
Cdd:MTH00033 270 EWYFLFAYAILRSIPNKLGGVLALFASILVLLLMPILDRSKIRSLTFNPTGKFFFWFIVGDFIILTWIGSAPAgADPYVL 349

                        330       340       350
                 ....*....|....*....|....*....|
gi 22797305  318 IGQLASLTYFTTILILFPTVSTLENKL*NY 347
Cdd:MTH00033 350 IGRIATIFYFGYFLVLVPLLGYLSNLFYEY 379
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-341 7.64e-115

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 338.30  E-value: 7.64e-115
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22797305   1 FGSLLGICLATQIITGLLLAAHYTADSTLAFASVSHTCRNVQYGWLLRNLHANGASLFFICIYLHIGRGLYYGSYlyKE- 79
Cdd:COG1290  42 FGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGAY--KKp 119

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22797305  80 ---TWNTGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALH-FLLPF 155
Cdd:COG1290 120 relNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDATLNRFFALHvLLLPA 199

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22797305 156 LIASLTLIHLTFLHDSGSNNPLGI----SSDCDKIPFHPYFSMKDILGLALMLLPLMTLALFSPNllGDPENFTPANPLI 231
Cdd:COG1290 200 LLLALVVLHLWLLHRHGHNNPPGPerkkTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFFFPI--NPPPNYGPANPLA 277

                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22797305 232 TPPHIKPEWYFLFAYAILRSIP--NKLGGVLALAASVLILLLIPLLHKSKQRTMTFRPLSQLLFWALTTNLLILTWVGSQ 309
Cdd:COG1290 278 TPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVRTALGVAFIVFFIVLTILGAN 357

                       330       340       350
                ....*....|....*....|....*....|..
gi 22797305 310 PVehPFIIIGQLASLTYFTTILILFPTVSTLE 341
Cdd:COG1290 358 PP--IATLLGSINTVTYFAFFLIVLPILAFIE 387
CYTB MTH00086
cytochrome b; Provisional
 1-334 2.81e-112

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 330.36  E-value: 2.81e-112
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22797305    1 FGSLLGICLATQIITGLLLAAHYTADSTLAFASVSHTCRNVQYGWLLRNLHANGASLFFICIYLHIGRGLYYGSYLYKET 80
Cdd:MTH00086  22 FGSMLGMVLVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFFIFLYLHIFKGLFMMSYRLKKV 101

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22797305   81 WNTGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFLIASL 160
Cdd:MTH00086 102 WISGLTIYLLVMMEAFMGYVLVWAQMSFWAAVVITSLLSVIPIWGPSIVMWIWGGFGVSSATLKFFFVLHFLLPWGLLVL 181

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22797305  161 TLIHLTFLHDSGSNNPLGISSDCDKIPFHPYFSMKDiLGLALMLLPLMTLALFSPNLLGDPENFTPANPLITPPHIKPEW 240
Cdd:MTH00086 182 VLFHLIFLHSTGSTSSLYCHGDYDKICFGPEYWNKD-AYNIIFWLVFIIFSLFYPFNLGDPEMFIEADPMMSPVHIVPEW 260

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22797305  241 YFLFAYAILRSIPNKLGGVLALAASVLILLLIPLLHKSkqrTMTFRPLSQLLFWALTTNLLILTWVGSQPVEHPFIIIGQ 320
Cdd:MTH00086 261 YFLFAYAILRAIPNKVLGVIALLMSIVVFYFFIFVNNY---TSCLNKLNKFLVFSFIVVNVILSWLGQCLVEYPFLFLSQ 337

                        330
                 ....*....|....
gi 22797305  321 LASLTYFTTILILF 334
Cdd:MTH00086 338 IFSFIYFFLILLML 351
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-174 1.91e-85

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 256.53  E-value: 1.91e-85
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22797305   1 FGSLLGICLATQIITGLLLAAHYTADSTLAFASVSHTCRNVQYGWLLRNLHANGASLFFICIYLHIGRGLYYGSY--LYK 78
Cdd:cd00284  25 FGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYYGSYkkPRE 104

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22797305  79 ETWNTGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFLIA 158
Cdd:cd00284 105 LTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWGGFSVDNATLTRFFALHFLLPFIIA 184

                       170
                ....*....|....*.
gi 22797305 159 SLTLIHLTFLHDSGSN 174
Cdd:cd00284 185 VIVILHLLFLHEQGSS 200
CYTB MTH00046
cytochrome b; Validated
 2-324 1.10e-80

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 249.90  E-value: 1.10e-80
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22797305    2 GSLLGICLATQIITGLLLAAHYTADSTLAFASVSHTCRNVQYGWLLRNLHANGASLFFICIYLHIGRGLYYGSYLYKETW 81
Cdd:MTH00046  25 GFVLSVFMVIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNVLFILLFIHMGRALYYSSYSKKGVW 104

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22797305   82 NTGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFLIASLT 161
Cdd:MTH00046 105 NVGFILYLLVMVEAFLGYILPWHQMSYWAATVLTSIVDSVPIVGSLVYKYIVGGFSVTGVTLVRVFSVHICLGFVILGLM 184

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22797305  162 LIHLTFLHDSGSNNPLGISSD-CDKIPFHPYFSMKDILGLALMLLPLMTLALFSPNLLGDPENFTPANPLITPPHIKPEW 240
Cdd:MTH00046 185 VVHLFYLHKSGSSNPLFSSNGySDVVYFHSYFTVKDLFLFMVVCSLLVFWLFVSPDLVLDIEAYLEADPLVTPVSIKPEW 264

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22797305  241 YFLFAYAILRSIPNKLGGvLALAASVLILLLIPLLHKSKqrtmTFRPLSQLLFWALTTNLLILTWVGSQPVEHPFIIIGQ 320
Cdd:MTH00046 265 YFLAFYAMLRSINSKIGG-LVLVLSFLFFLWVPTFNGSS----VYSVWRQVNFWLIVSLFFSLSYLGGCHPEYPYLLISQ 339


                 ....
gi 22797305  321 LASL 324
Cdd:MTH00046 340 LFSV 343
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
1-172 1.54e-74

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 228.42  E-value: 1.54e-74
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22797305     1 FGSLLGICLATQIITGLLLAAHYTADSTLAFASVSHTCRNVQYGWLLRNLHANGASLFFICIYLHIGRGLYYG--SYLYK 78
Cdd:pfam00033  16 FGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIFRGLYYGgfSYPRE 95

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22797305    79 ETWNTGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFLIA 158
Cdd:pfam00033  96 LTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATLTRFFSLHFLLPFILA 175

                         170
                  ....*....|....
gi 22797305   159 SLTLIHLTFLHDSG 172
Cdd:pfam00033 176 ILMLLHLLFLHETG 189
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 175-322 2.33e-48

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 159.73  E-value: 2.33e-48
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22797305 175 NPLGISSDCDKIPFHPYFSMKDILGLALMLLPLMTLALFSPNLLGDPENFTPANPLITPPHIKPEWYFLFAYAILRSIPN 254
Cdd:cd00290   1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80

                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 22797305 255 KLGGVLALAASVLILLLIPLLHKSKQRTmTFRPLSQLLFWALTTNLLILTWVGSQPVEHPFIIIGQLA 322
Cdd:cd00290  81 KLLGVLAMAASILSLFLVPFLENSNKRS-QFRPLRPTAFWVFLAGTLVLGWLGIQPVEYPFSLILQLF 147
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
56-221 2.75e-41

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 142.00  E-value: 2.75e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22797305    56 SLFFICIYLHIGRGLYYGSYLYKE--TWNTGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAW 133
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWLLF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22797305   134 GGFSVDNPTLTRFFALHF-LLPFLIASLTLIHLTFLHDSGSNNPLGISSDCDKIPFHPYFSMKDILGLALMLLPLMTLAL 212
Cdd:pfam13631  81 GGPFPGTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKMLLFFLITVALLIGLAQ 160


                  ....*....
gi 22797305   213 FSPNLLGDP 221
Cdd:pfam13631 161 INPIWLGGP 169
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
226-326 4.38e-40

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 136.45  E-value: 4.38e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22797305   226 PANPLITPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLILLLIPLLHKSKQRTMTFRPLSQLLFWALTTNLLILTW 305
Cdd:pfam00032   1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLFKIFFWLFVVDFVVLGW 80

                          90       100
                  ....*....|....*....|.
gi 22797305   306 VGSQPVEHPFIIIGQLASLTY 326
Cdd:pfam00032  81 LGKQPPTGPYTLLGQIATVYY 101
PRK03735 PRK03735
cytochrome b6; Provisional
 1-177 2.56e-34

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 125.59  E-value: 2.56e-34
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22797305    1 FGSLLGICLATQIITGLLLAAHYTADSTLAFASVSHTCRNVQYGWLLRNLHANGASLFFICIYLHIGRGLYYGSYLYKE- 79
Cdd:PRK03735  44 FGGLTFFCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKPRe 123

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22797305   80 -TWNTGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALH-FLLPFLI 157
Cdd:PRK03735 124 lNWVVGVLIFFVTVGLGFTGYLLPWDQKAYFATKVGSQIAEAIPVIGDFIKTLLRGGEIVGAQTLTRFFAIHvFFLPWAL 203

                        170       180
                 ....*....|....*....|
gi 22797305  158 ASLTLIHLTFLHDSGSNNPL 177
Cdd:PRK03735 204 AVLMLAHFLMIRKQGISGPL 223
petB CHL00070
cytochrome b6
 1-177 5.31e-32

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 119.44  E-value: 5.31e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22797305    1 FGSLLGICLATQIITGLLLAAHYTADSTLAFASVSHTCRNVQYGWLLRNLHANGASLFFICIYLHIGRGLYYGSYLYKE- 79
Cdd:CHL00070  36 LGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPRe 115

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22797305   80 -TWNTGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALH-FLLPFLI 157
Cdd:CHL00070 116 lTWVTGVVLAVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSVSVGQSTLTRFYSLHtFVLPLLT 195

                        170       180
                 ....*....|....*....|
gi 22797305  158 ASLTLIHLTFLHDSGSNNPL 177
Cdd:CHL00070 196 AVFMLMHFLMIRKQGISGPL 215
petD CHL00058
cytochrome b6/f complex subunit IV
 226-264 2.75e-09

cytochrome b6/f complex subunit IV


Pssm-ID: 176998  Cd Length: 160  Bit Score: 55.39  E-value: 2.75e-09
                         10        20        30
                 ....*....|....*....|....*....|....*....
gi 22797305  226 PANPLITPPHIKPEWYFLFAYAILRSIPNKLGGVLALAA 264
Cdd:CHL00058  65 PADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMAS 103
PetD COG5679
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion]; ...
 226-264 8.23e-09

Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion];


Pssm-ID: 444393 [Multi-domain]  Cd Length: 161  Bit Score: 54.03  E-value: 8.23e-09
                        10        20        30
                ....*....|....*....|....*....|....*....
gi 22797305 226 PANPLITPPHIKPEWYFLFAYAILRSIPNKLGGVLALAA 264
Cdd:COG5679  66 PADPFATPLEILPEWYLYPVFQILRVVPNKLLGIVMMAA 104
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 226-264 4.96e-08

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 51.72  E-value: 4.96e-08
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 22797305   226 PANPLITPPHIKPEWYFLFAYAILRSIPNKLGGVLALAA 264
Cdd:TIGR01156  65 PANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAA 103
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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