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Conserved domains on  [gi|226522298|gb|ACO68281|]
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predicted protein [Micromonas commoda]

Protein Classification

AAA family ATPase( domain architecture ID 10591166)

AAA family ATPase similar to Bacillus subtilis tunicamycin resistance protein (TmrB), an ATP-binding membrane protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
AAA_18 pfam13238
AAA domain;
14-138 9.63e-35

AAA domain;


:

Pssm-ID: 433052 [Multi-domain]  Cd Length: 128  Bit Score: 118.69  E-value: 9.63e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226522298   14 VLITGTPGTGKSSLAERVAAavEGFKRIDVSQLAKEQDMLEEFDEELD-THVIDEDK---VLDHMEEHGLGGDAGGVVVD 89
Cdd:pfam13238   1 ILITGTPGVGKTTLAKELSK--RLGFGDNVRDLALENGLVLGDDPETReSKRLDEDKldrLLDLLEENAALEEGGNLIID 78

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|
gi 226522298   90 YHGCDLFPERWFDLV-VVLTCDNAVLYDRLQARGYSDKKIRGNVECEIFQ 138
Cdd:pfam13238  79 GHLAELEPERAKDLVgIVLRASPEELLERLEKRGYEEAKIKENEEAEILG 128
 
Name Accession Description Interval E-value
AAA_18 pfam13238
AAA domain;
14-138 9.63e-35

AAA domain;


Pssm-ID: 433052 [Multi-domain]  Cd Length: 128  Bit Score: 118.69  E-value: 9.63e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226522298   14 VLITGTPGTGKSSLAERVAAavEGFKRIDVSQLAKEQDMLEEFDEELD-THVIDEDK---VLDHMEEHGLGGDAGGVVVD 89
Cdd:pfam13238   1 ILITGTPGVGKTTLAKELSK--RLGFGDNVRDLALENGLVLGDDPETReSKRLDEDKldrLLDLLEENAALEEGGNLIID 78

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|
gi 226522298   90 YHGCDLFPERWFDLV-VVLTCDNAVLYDRLQARGYSDKKIRGNVECEIFQ 138
Cdd:pfam13238  79 GHLAELEPERAKDLVgIVLRASPEELLERLEKRGYEEAKIKENEEAEILG 128
Fap7 COG1936
Broad-specificity NMP kinase [Nucleotide transport and metabolism];
14-180 9.24e-33

Broad-specificity NMP kinase [Nucleotide transport and metabolism];


Pssm-ID: 441539 [Multi-domain]  Cd Length: 173  Bit Score: 114.91  E-value: 9.24e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226522298  14 VLITGTPGTGKSSLAERVAAAVeGFKRIDVSQLAKEQDMLEEFDEELDTHVIDEDKVLDHMEEHglggDAGGVVVDYHGC 93
Cdd:COG1936    3 IAITGTPGTGKTTVAKLLAERL-GLEVIHLNDLVKEEGLYTEVDEERDSLVVDEDALAEELEEL----KEGDVIIEGHLA 77

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226522298  94 DLFPErwfDLVVVLTCDNAVLYDRLQARGYSDKKIRGNVECEIFQTLVEEARDSYEESivKVCASDTID-DMEENEKAIV 172
Cdd:COG1936   78 HLVDV---DRVIVLRCNPEVLEERLEERGYSEEKIRENVEAEALDVILSEAVERFGEE--KVYEIDTTGrTPEEVADEIL 152


                 ....*...
gi 226522298 173 EFVGAWKS 180
Cdd:COG1936  153 AIIKGERE 160
PRK03839 PRK03839
putative kinase; Provisional
 16-152 1.14e-16

putative kinase; Provisional


Pssm-ID: 179660  Cd Length: 180  Bit Score: 73.60  E-value: 1.14e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226522298  16 ITGTPGTGKSSLAERVAAAVeGFKRIDVSQLAKEQDMLEEFDEELDthvIDEDKVLDHMEEHGLGGDaggVVVDYHGCDL 95
Cdd:PRK03839   5 ITGTPGVGKTTVSKLLAEKL-GYEYVDLTEFALKKGIGEEKDDEME---IDFDKLAYFIEEEFKEKN---VVLDGHLSHL 77

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 226522298  96 FPErwfDLVVVLTCDNAVLYDRLQARGYSDKKIRGNVECEIFQTLVEEARDSYEESI 152
Cdd:PRK03839  78 LPV---DYVIVLRAHPKIIKERLKERGYSKKKILENVEAELVDVCLCEALEEKEKVI 131
AAA cd00009
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily ...
 9-121 1.06e-05

The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.


Pssm-ID: 99707 [Multi-domain]  Cd Length: 151  Bit Score: 43.29  E-value: 1.06e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226522298   9 RRKPNVLITGTPGTGKSSLAERVAAAVEG----FKRIDVSQLAkEQDMLEEFDEELDTHVIDEDK--------VLDHMEE 76
Cdd:cd00009   17 PPPKNLLLYGPPGTGKTTLARAIANELFRpgapFLYLNASDLL-EGLVVAELFGHFLVRLLFELAekakpgvlFIDEIDS 95

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|..
gi 226522298  77 HGLGGDAGGVVVDYHGCDLFPERWfDLVVVLTCDNAV-------LYDRLQAR 121
Cdd:cd00009   96 LSRGAQNALLRVLETLNDLRIDRE-NVRVIGATNRPLlgdldraLYDRLDIR 146
AAA smart00382
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ...
 10-51 9.42e-03

ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.


Pssm-ID: 214640 [Multi-domain]  Cd Length: 148  Bit Score: 35.04  E-value: 9.42e-03
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*.
gi 226522298    10 RKPNVLITGTPGTGKSSLAERVAAAV----EGFKRIDVSQLAKEQD 51
Cdd:smart00382   1 PGEVILIVGPPGSGKTTLARALARELgppgGGVIYIDGEDILEEVL 46
 
Name Accession Description Interval E-value
AAA_18 pfam13238
AAA domain;
14-138 9.63e-35

AAA domain;


Pssm-ID: 433052 [Multi-domain]  Cd Length: 128  Bit Score: 118.69  E-value: 9.63e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226522298   14 VLITGTPGTGKSSLAERVAAavEGFKRIDVSQLAKEQDMLEEFDEELD-THVIDEDK---VLDHMEEHGLGGDAGGVVVD 89
Cdd:pfam13238   1 ILITGTPGVGKTTLAKELSK--RLGFGDNVRDLALENGLVLGDDPETReSKRLDEDKldrLLDLLEENAALEEGGNLIID 78

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|
gi 226522298   90 YHGCDLFPERWFDLV-VVLTCDNAVLYDRLQARGYSDKKIRGNVECEIFQ 138
Cdd:pfam13238  79 GHLAELEPERAKDLVgIVLRASPEELLERLEKRGYEEAKIKENEEAEILG 128
Fap7 COG1936
Broad-specificity NMP kinase [Nucleotide transport and metabolism];
14-180 9.24e-33

Broad-specificity NMP kinase [Nucleotide transport and metabolism];


Pssm-ID: 441539 [Multi-domain]  Cd Length: 173  Bit Score: 114.91  E-value: 9.24e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226522298  14 VLITGTPGTGKSSLAERVAAAVeGFKRIDVSQLAKEQDMLEEFDEELDTHVIDEDKVLDHMEEHglggDAGGVVVDYHGC 93
Cdd:COG1936    3 IAITGTPGTGKTTVAKLLAERL-GLEVIHLNDLVKEEGLYTEVDEERDSLVVDEDALAEELEEL----KEGDVIIEGHLA 77

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226522298  94 DLFPErwfDLVVVLTCDNAVLYDRLQARGYSDKKIRGNVECEIFQTLVEEARDSYEESivKVCASDTID-DMEENEKAIV 172
Cdd:COG1936   78 HLVDV---DRVIVLRCNPEVLEERLEERGYSEEKIRENVEAEALDVILSEAVERFGEE--KVYEIDTTGrTPEEVADEIL 152


                 ....*...
gi 226522298 173 EFVGAWKS 180
Cdd:COG1936  153 AIIKGERE 160
PRK03839 PRK03839
putative kinase; Provisional
 16-152 1.14e-16

putative kinase; Provisional


Pssm-ID: 179660  Cd Length: 180  Bit Score: 73.60  E-value: 1.14e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226522298  16 ITGTPGTGKSSLAERVAAAVeGFKRIDVSQLAKEQDMLEEFDEELDthvIDEDKVLDHMEEHGLGGDaggVVVDYHGCDL 95
Cdd:PRK03839   5 ITGTPGVGKTTVSKLLAEKL-GYEYVDLTEFALKKGIGEEKDDEME---IDFDKLAYFIEEEFKEKN---VVLDGHLSHL 77

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 226522298  96 FPErwfDLVVVLTCDNAVLYDRLQARGYSDKKIRGNVECEIFQTLVEEARDSYEESI 152
Cdd:PRK03839  78 LPV---DYVIVLRAHPKIIKERLKERGYSKKKILENVEAELVDVCLCEALEEKEKVI 131
COG0645 COG0645
Predicted kinase, contains AAA domain [General function prediction only];
14-122 4.80e-06

Predicted kinase, contains AAA domain [General function prediction only];


Pssm-ID: 440410 [Multi-domain]  Cd Length: 164  Bit Score: 44.52  E-value: 4.80e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226522298  14 VLITGTPGTGKSSLAERVAAAVeGFKRIDV----SQLAKEQDMLEEFDEELDTHVidEDKVLDHMEEH-GLGGDaggVVV 88
Cdd:COG0645    2 ILVCGLPGSGKSTLARALAERL-GAVRLRSdvvrKRLFGAGLAPLERSPEATART--YARLLALARELlAAGRS---VIL 75

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*
gi 226522298  89 DyHGCDLFPER--WFDL---------VVVLTCDNAVLYDRLQARG 122
Cdd:COG0645   76 D-ATFLRRAQReaFRALaeeagapfvLIWLDAPEEVLRERLEARN 119
AAA cd00009
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily ...
 9-121 1.06e-05

The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.


Pssm-ID: 99707 [Multi-domain]  Cd Length: 151  Bit Score: 43.29  E-value: 1.06e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226522298   9 RRKPNVLITGTPGTGKSSLAERVAAAVEG----FKRIDVSQLAkEQDMLEEFDEELDTHVIDEDK--------VLDHMEE 76
Cdd:cd00009   17 PPPKNLLLYGPPGTGKTTLARAIANELFRpgapFLYLNASDLL-EGLVVAELFGHFLVRLLFELAekakpgvlFIDEIDS 95

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|..
gi 226522298  77 HGLGGDAGGVVVDYHGCDLFPERWfDLVVVLTCDNAV-------LYDRLQAR 121
Cdd:cd00009   96 LSRGAQNALLRVLETLNDLRIDRE-NVRVIGATNRPLlgdldraLYDRLDIR 146
McrB COG1401
5-methylcytosine-specific restriction endonuclease McrBC, GTP-binding regulatory subunit McrB ...
 9-37 1.95e-05

5-methylcytosine-specific restriction endonuclease McrBC, GTP-binding regulatory subunit McrB [Defense mechanisms];


Pssm-ID: 441011 [Multi-domain]  Cd Length: 477  Bit Score: 43.99  E-value: 1.95e-05
                         10        20
                 ....*....|....*....|....*....
gi 226522298   9 RRKPNVLITGTPGTGKSSLAERVAAAVEG 37
Cdd:COG1401  219 KTKKNVILAGPPGTGKTYLARRLAEALGG 247
AAA_22 pfam13401
AAA domain;
10-88 1.55e-04

AAA domain;


Pssm-ID: 379165 [Multi-domain]  Cd Length: 129  Bit Score: 39.63  E-value: 1.55e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226522298   10 RKPNVLITGTPGTGKSSLAERVAAAVE----GFKRIDVSQLAKEQDMLEEFDEELD---THVIDEDKVLDHMEEHGLGGD 82
Cdd:pfam13401   4 GAGILVLTGESGTGKTTLLRRLLEQLPevrdSVVFVDLPSGTSPKDLLRALLRALGlplSGRLSKEELLAALQQLLLALA 83


                  ....*.
gi 226522298   83 AGGVVV 88
Cdd:pfam13401  84 VAVVLI 89
AAA_5 pfam07728
AAA domain (dynein-related subfamily); This Pfam entry includes some of the AAA proteins not ...
 13-39 3.42e-04

AAA domain (dynein-related subfamily); This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.


Pssm-ID: 400191 [Multi-domain]  Cd Length: 135  Bit Score: 38.81  E-value: 3.42e-04
                          10        20
                  ....*....|....*....|....*..
gi 226522298   13 NVLITGTPGTGKSSLAERVAAAVEGFK 39
Cdd:pfam07728   1 GVLLVGPPGTGKTELAERLAAALSNRP 27
RecA-like_protease cd19481
proteases similar to RecA; RecA-like NTPases. This family includes the NTP binding domain of ...
 9-87 4.29e-04

proteases similar to RecA; RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.


Pssm-ID: 410889 [Multi-domain]  Cd Length: 158  Bit Score: 38.80  E-value: 4.29e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226522298   9 RRKPNVLITGTPGTGKSSLAERVAA-AVEGFKRIDVSQLAKE-----QDMLEEFDEELDTH-----VIDE-DKVLDHMEE 76
Cdd:cd19481   24 GLPKGILLYGPPGTGKTLLAKALAGeLGLPLIVVKLSSLLSKyvgesEKNLRKIFERARRLapcilFIDEiDAIGRKRDS 103

                         90
                 ....*....|.
gi 226522298  77 HGLGGDAGGVV 87
Cdd:cd19481  104 SGESGELRRVL 114
HolB COG0470
DNA polymerase III, delta prime subunit [Replication, recombination and repair];
3-65 1.05e-03

DNA polymerase III, delta prime subunit [Replication, recombination and repair];


Pssm-ID: 440238 [Multi-domain]  Cd Length: 289  Bit Score: 38.42  E-value: 1.05e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 226522298   3 KSAATPRRKPNVLITGTPGTGKSSLAERVAAAVEGFKRIDVSQLAKEQDMLEEFDEELDTHVI 65
Cdd:COG0470   10 AAAESGRLPHALLLHGPPGIGKTTLALALARDLLCENPEGGKACGQCHSRLMAAGNHPDLLEL 72
MoxR COG0714
MoxR-like ATPase [General function prediction only]; MoxR-like ATPase is part of the Pathway ...
 14-41 1.52e-03

MoxR-like ATPase [General function prediction only]; MoxR-like ATPase is part of the Pathway/BioSystem: Cobalamine/B12 biosynthesis


Pssm-ID: 440478 [Multi-domain]  Cd Length: 292  Bit Score: 38.22  E-value: 1.52e-03
                         10        20
                 ....*....|....*....|....*....
gi 226522298  14 VLITGTPGTGKSSLAERVAAAVEG-FKRI 41
Cdd:COG0714   34 LLLEGVPGVGKTTLAKALARALGLpFIRI 62
AAA_16 pfam13191
AAA ATPase domain; This family of domains contain a P-loop motif that is characteriztic of the ...
 10-37 1.99e-03

AAA ATPase domain; This family of domains contain a P-loop motif that is characteriztic of the AAA superfamily.


Pssm-ID: 433025 [Multi-domain]  Cd Length: 167  Bit Score: 37.10  E-value: 1.99e-03
                          10        20
                  ....*....|....*....|....*...
gi 226522298   10 RKPNVLITGTPGTGKSSLAERVAAAVEG 37
Cdd:pfam13191  23 RPPSVLLTGEAGTGKTTLLRELLRALER 50
AAA_28 pfam13521
AAA domain;
14-89 2.50e-03

AAA domain;


Pssm-ID: 433278 [Multi-domain]  Cd Length: 164  Bit Score: 36.86  E-value: 2.50e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226522298   14 VLITGTPGTGKSSLAERVAAAV------EGFKRIDVSQLAKEQDMLEEFDEELDThvidEDKVLDH-MEEHGLGGDAGGV 86
Cdd:pfam13521   2 IVITGGPSTGKTTLAEALAARFgypvvpEAAREILEELGADGGDALPWVEDLLAF----ARGVLEAqLEDEAAAAANDLL 77


                  ...
gi 226522298   87 VVD 89
Cdd:pfam13521  78 FFD 80
PRK09270 PRK09270
nucleoside triphosphate hydrolase domain-containing protein; Reviewed
 1-37 2.62e-03

nucleoside triphosphate hydrolase domain-containing protein; Reviewed


Pssm-ID: 236442  Cd Length: 229  Bit Score: 37.22  E-value: 2.62e-03
                         10        20        30
                 ....*....|....*....|....*....|....*..
gi 226522298   1 MGKSAATPRRKPNVLITGTPGTGKSSLAERVAAAVEG 37
Cdd:PRK09270  23 LAALQAEPQRRTIVGIAGPPGAGKSTLAEFLEALLQQ 59
AAA_24 pfam13479
AAA domain; This AAA domain is found in a wide variety of presumed phage proteins.
 10-77 2.64e-03

AAA domain; This AAA domain is found in a wide variety of presumed phage proteins.


Pssm-ID: 433243  Cd Length: 199  Bit Score: 36.92  E-value: 2.64e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226522298   10 RKPNVLITGTPGTGKSSLA-----------ERVAAAVEGFKRIDVSQLAKEQDMLEEFDEELDTH-------VIDEdkvL 71
Cdd:pfam13479   1 KKLKILIYGPSGIGKTTFAktlpkplfldtEKGSKALDGDRFPDIVIRDSWQDFLDAIDELTAAEladyktiVIDT---V 77


                  ....*.
gi 226522298   72 DHMEEH 77
Cdd:pfam13479  78 DWLERL 83
AAA pfam00004
ATPase family associated with various cellular activities (AAA); AAA family proteins often ...
 14-46 2.81e-03

ATPase family associated with various cellular activities (AAA); AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes.


Pssm-ID: 459627 [Multi-domain]  Cd Length: 130  Bit Score: 36.03  E-value: 2.81e-03
                          10        20        30
                  ....*....|....*....|....*....|....
gi 226522298   14 VLITGTPGTGKSSLAERVAAAVEG-FKRIDVSQL 46
Cdd:pfam00004   1 LLLYGPPGTGKTTLAKAVAKELGApFIEISGSEL 34
AAA_17 pfam13207
AAA domain;
17-121 9.28e-03

AAA domain;


Pssm-ID: 463810 [Multi-domain]  Cd Length: 136  Bit Score: 34.91  E-value: 9.28e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226522298   17 TGTPGTGKSSLAERVAAAVeGFKRI---DV-------SQLAKEQDMLEEFDEELDTHVIDEdkVLDHMEEHglgGDAGGV 86
Cdd:pfam13207   1 TGVPGSGKTTQLKKLAEKL-GFPHIsagDLlreeakeRGLVEDRDEMRKLPLEPQKELQKL--AAERIAEE---AGEGGV 74

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 226522298   87 VVDYHGC--------DLFPERWF-----DLVVVLTCDNAVLYDRLQAR 121
Cdd:pfam13207  75 IVDGHPRiktpagylPGLPVEVLrelkpDAIILLEADPEEILERRLKD 122
AAA smart00382
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ...
 10-51 9.42e-03

ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.


Pssm-ID: 214640 [Multi-domain]  Cd Length: 148  Bit Score: 35.04  E-value: 9.42e-03
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*.
gi 226522298    10 RKPNVLITGTPGTGKSSLAERVAAAV----EGFKRIDVSQLAKEQD 51
Cdd:smart00382   1 PGEVILIVGPPGSGKTTLARALARELgppgGGVIYIDGEDILEEVL 46
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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