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Conserved domains on  [gi|226498324|ref|NP_001140269|]
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Transcription factor MYB61 [Zea mays]

Protein Classification

SANT/Myb-like DNA-binding domain-containing protein( domain architecture ID 999994)

SANT (SWI3, ADA2, N-CoR and TFIIIB)/Myb-like DNA-binding domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PLN03091 super family cl33633
hypothetical protein; Provisional
 1-426 2.31e-143

hypothetical protein; Provisional


The actual alignment was detected with superfamily member PLN03091:

Pssm-ID: 215570 [Multi-domain]  Cd Length: 459  Bit Score: 416.69  E-value: 2.31e-143
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226498324   1 MGRHSCCYKQKLRKGLWSPEEDEKLMNHITKHGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGAFAQDEEDLIIE 80
Cdd:PLN03091   1 MGRHSCCYKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQEENLIIE 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226498324  81 LHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCIKKKLRQKGIDPSTHKPLTEADRG-GAAPTISTERTSGSSDVN------ 153
Cdd:PLN03091  81 LHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRGIDPNTHKPLSEVENGeDKNPPTDDKSDKASSVVSnelnll 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226498324 154 ------PSSTGPLGNLSP-------LLSETAQSSMLMPVYDKNRAETpNLARPKlPPKELFLEQLTAGHE-SPSTCHSSG 219
Cdd:PLN03091 161 kadnskPLAALQEKRSSSispagyqLEVESSSSSKINNSNNNNHSNS-NLMTPT-PNKDFFLDRFTTSHEsSTTSCRPSD 238

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226498324 220 QTLYFPFQQpLGYNSESGSSDGANmNSLWFNQ--------SDFNCSTISTVMPP-VSPSALSTSMG----LNLPPDNPrh 286
Cdd:PLN03091 239 LVGHFPFQQ-LNYASNARLSTNPN-PTLWFSQnsksfemnSEFSSSMTPSILPPsVTSSFLPTPMSykpsISLPSDNP-- 314

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226498324 287 ggtGIGSTAVDSF-YWDGTNPSSSSSTGSRGSNSMgfEPQSTSTILENSVFTW--TDIGQ-EKDTRAHLVA----ELKWP 358
Cdd:PLN03091 315 ---SIPSFTVNGVrNWEAGAFSNNSNSSNGSSSSI--ELQSNSSFFENSIFSWglADCGKsDKEAQIHLLEsdpeDIKWP 389

                        410       420       430       440       450       460       470
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 226498324 359 DSFAET---TTAMQNQ-SQTLYDDvIKAESQFSIEGICASWFQNQQPQQQLQvAPDMYDKDLQRMQLSFENI 426
Cdd:PLN03091 390 EYLQNPflmAATLQNQtPQPLYNE-IKPETHFITEGSSTMWPHNQQQQEPLQ-NPDIYTKDLQRLTAAFGQI 459
 
Name Accession Description Interval E-value
PLN03091 PLN03091
hypothetical protein; Provisional
 1-426 2.31e-143

hypothetical protein; Provisional


Pssm-ID: 215570 [Multi-domain]  Cd Length: 459  Bit Score: 416.69  E-value: 2.31e-143
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226498324   1 MGRHSCCYKQKLRKGLWSPEEDEKLMNHITKHGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGAFAQDEEDLIIE 80
Cdd:PLN03091   1 MGRHSCCYKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQEENLIIE 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226498324  81 LHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCIKKKLRQKGIDPSTHKPLTEADRG-GAAPTISTERTSGSSDVN------ 153
Cdd:PLN03091  81 LHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRGIDPNTHKPLSEVENGeDKNPPTDDKSDKASSVVSnelnll 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226498324 154 ------PSSTGPLGNLSP-------LLSETAQSSMLMPVYDKNRAETpNLARPKlPPKELFLEQLTAGHE-SPSTCHSSG 219
Cdd:PLN03091 161 kadnskPLAALQEKRSSSispagyqLEVESSSSSKINNSNNNNHSNS-NLMTPT-PNKDFFLDRFTTSHEsSTTSCRPSD 238

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226498324 220 QTLYFPFQQpLGYNSESGSSDGANmNSLWFNQ--------SDFNCSTISTVMPP-VSPSALSTSMG----LNLPPDNPrh 286
Cdd:PLN03091 239 LVGHFPFQQ-LNYASNARLSTNPN-PTLWFSQnsksfemnSEFSSSMTPSILPPsVTSSFLPTPMSykpsISLPSDNP-- 314

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226498324 287 ggtGIGSTAVDSF-YWDGTNPSSSSSTGSRGSNSMgfEPQSTSTILENSVFTW--TDIGQ-EKDTRAHLVA----ELKWP 358
Cdd:PLN03091 315 ---SIPSFTVNGVrNWEAGAFSNNSNSSNGSSSSI--ELQSNSSFFENSIFSWglADCGKsDKEAQIHLLEsdpeDIKWP 389

                        410       420       430       440       450       460       470
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 226498324 359 DSFAET---TTAMQNQ-SQTLYDDvIKAESQFSIEGICASWFQNQQPQQQLQvAPDMYDKDLQRMQLSFENI 426
Cdd:PLN03091 390 EYLQNPflmAATLQNQtPQPLYNE-IKPETHFITEGSSTMWPHNQQQQEPLQ-NPDIYTKDLQRLTAAFGQI 459
REB1 COG5147
Myb superfamily proteins, including transcription factors and mRNA splicing factors ...
 8-113 1.13e-14

Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning];


Pssm-ID: 227476 [Multi-domain]  Cd Length: 512  Bit Score: 75.59  E-value: 1.13e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226498324   8 YKQKLRKGLWSPEEDEKLMNHITKHGHGCWSSVPKLAGLqRCGKSCRLRWINYLRPDLKRGAFAQDEEDLIIELHAVLGN 87
Cdd:COG5147   14 MQTKRKGGSWKRTEDEDLKALVKKLGPNNWSKVASLLIS-STGKQSSNRWNNHLNPQLKKKNWSEEEDEQLIDLDKELGT 92

                         90       100
                 ....*....|....*....|....*.
gi 226498324  88 RWSQIAAQLPGRTDNEIKNLWNSCIK 113
Cdd:COG5147   93 QWSTIADYKDRRTAQQCVERYVNTLE 118
Myb_DNA-binding pfam00249
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 67-110 5.95e-13

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 459731 [Multi-domain]  Cd Length: 46  Bit Score: 62.91  E-value: 5.95e-13
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 226498324   67 RGAFAQDEEDLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNS 110
Cdd:pfam00249   1 RGPWTPEEDELLLEAVEKLGNRWKKIAKLLPGRTDNQCKNRWQN 44
SANT cd00167
'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric ...
 17-61 4.10e-11

'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.


Pssm-ID: 238096 [Multi-domain]  Cd Length: 45  Bit Score: 57.59  E-value: 4.10e-11
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*
gi 226498324  17 WSPEEDEKLMNHITKHGHGCWSSVPKLAGLqRCGKSCRLRWINYL 61
Cdd:cd00167    2 WTEEEDELLLEAVKKYGKNNWEKIAKELPG-RTPKQCRERWRNLL 45
SANT smart00717
SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;
14-63 5.83e-11

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;


Pssm-ID: 197842 [Multi-domain]  Cd Length: 49  Bit Score: 57.23  E-value: 5.83e-11
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|
gi 226498324    14 KGLWSPEEDEKLMNHITKHGHGCWSSVPKLAGLqRCGKSCRLRWINYLRP 63
Cdd:smart00717   1 KGEWTEEEDELLIELVKKYGKNNWEKIAKELPG-RTAEQCRERWRNLLKP 49
 
Name Accession Description Interval E-value
PLN03091 PLN03091
hypothetical protein; Provisional
 1-426 2.31e-143

hypothetical protein; Provisional


Pssm-ID: 215570 [Multi-domain]  Cd Length: 459  Bit Score: 416.69  E-value: 2.31e-143
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226498324   1 MGRHSCCYKQKLRKGLWSPEEDEKLMNHITKHGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGAFAQDEEDLIIE 80
Cdd:PLN03091   1 MGRHSCCYKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQEENLIIE 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226498324  81 LHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCIKKKLRQKGIDPSTHKPLTEADRG-GAAPTISTERTSGSSDVN------ 153
Cdd:PLN03091  81 LHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRGIDPNTHKPLSEVENGeDKNPPTDDKSDKASSVVSnelnll 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226498324 154 ------PSSTGPLGNLSP-------LLSETAQSSMLMPVYDKNRAETpNLARPKlPPKELFLEQLTAGHE-SPSTCHSSG 219
Cdd:PLN03091 161 kadnskPLAALQEKRSSSispagyqLEVESSSSSKINNSNNNNHSNS-NLMTPT-PNKDFFLDRFTTSHEsSTTSCRPSD 238

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226498324 220 QTLYFPFQQpLGYNSESGSSDGANmNSLWFNQ--------SDFNCSTISTVMPP-VSPSALSTSMG----LNLPPDNPrh 286
Cdd:PLN03091 239 LVGHFPFQQ-LNYASNARLSTNPN-PTLWFSQnsksfemnSEFSSSMTPSILPPsVTSSFLPTPMSykpsISLPSDNP-- 314

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226498324 287 ggtGIGSTAVDSF-YWDGTNPSSSSSTGSRGSNSMgfEPQSTSTILENSVFTW--TDIGQ-EKDTRAHLVA----ELKWP 358
Cdd:PLN03091 315 ---SIPSFTVNGVrNWEAGAFSNNSNSSNGSSSSI--ELQSNSSFFENSIFSWglADCGKsDKEAQIHLLEsdpeDIKWP 389

                        410       420       430       440       450       460       470
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 226498324 359 DSFAET---TTAMQNQ-SQTLYDDvIKAESQFSIEGICASWFQNQQPQQQLQvAPDMYDKDLQRMQLSFENI 426
Cdd:PLN03091 390 EYLQNPflmAATLQNQtPQPLYNE-IKPETHFITEGSSTMWPHNQQQQEPLQ-NPDIYTKDLQRLTAAFGQI 459
PLN03212 PLN03212
Transcription repressor MYB5; Provisional
 6-129 6.96e-55

Transcription repressor MYB5; Provisional


Pssm-ID: 178751 [Multi-domain]  Cd Length: 249  Bit Score: 182.58  E-value: 6.96e-55
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226498324   6 CCYKQKLRKGLWSPEEDEKLMNHITKHGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGAFAQDEEDLIIELHAVL 85
Cdd:PLN03212  17 CCTKMGMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRPSVKRGGITSDEEDLILRLHRLL 96

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....
gi 226498324  86 GNRWSQIAAQLPGRTDNEIKNLWNSCIKKKLRQKGIDPSTHKPL 129
Cdd:PLN03212  97 GNRWSLIAGRIPGRTDNEIKNYWNTHLRKKLLRQGIDPQTHKPL 140
REB1 COG5147
Myb superfamily proteins, including transcription factors and mRNA splicing factors ...
 8-113 1.13e-14

Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning];


Pssm-ID: 227476 [Multi-domain]  Cd Length: 512  Bit Score: 75.59  E-value: 1.13e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226498324   8 YKQKLRKGLWSPEEDEKLMNHITKHGHGCWSSVPKLAGLqRCGKSCRLRWINYLRPDLKRGAFAQDEEDLIIELHAVLGN 87
Cdd:COG5147   14 MQTKRKGGSWKRTEDEDLKALVKKLGPNNWSKVASLLIS-STGKQSSNRWNNHLNPQLKKKNWSEEEDEQLIDLDKELGT 92

                         90       100
                 ....*....|....*....|....*.
gi 226498324  88 RWSQIAAQLPGRTDNEIKNLWNSCIK 113
Cdd:COG5147   93 QWSTIADYKDRRTAQQCVERYVNTLE 118
Myb_DNA-binding pfam00249
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 67-110 5.95e-13

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 459731 [Multi-domain]  Cd Length: 46  Bit Score: 62.91  E-value: 5.95e-13
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 226498324   67 RGAFAQDEEDLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNS 110
Cdd:pfam00249   1 RGPWTPEEDELLLEAVEKLGNRWKKIAKLLPGRTDNQCKNRWQN 44
Myb_DNA-binding pfam00249
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 14-61 6.25e-13

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 459731 [Multi-domain]  Cd Length: 46  Bit Score: 62.91  E-value: 6.25e-13
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 226498324   14 KGLWSPEEDEKLMNHITKHGhGCWSSVPKLAGLqRCGKSCRLRWINYL 61
Cdd:pfam00249   1 RGPWTPEEDELLLEAVEKLG-NRWKKIAKLLPG-RTDNQCKNRWQNYL 46
SANT cd00167
'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric ...
 17-61 4.10e-11

'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.


Pssm-ID: 238096 [Multi-domain]  Cd Length: 45  Bit Score: 57.59  E-value: 4.10e-11
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*
gi 226498324  17 WSPEEDEKLMNHITKHGHGCWSSVPKLAGLqRCGKSCRLRWINYL 61
Cdd:cd00167    2 WTEEEDELLLEAVKKYGKNNWEKIAKELPG-RTPKQCRERWRNLL 45
SANT smart00717
SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;
14-63 5.83e-11

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;


Pssm-ID: 197842 [Multi-domain]  Cd Length: 49  Bit Score: 57.23  E-value: 5.83e-11
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|
gi 226498324    14 KGLWSPEEDEKLMNHITKHGHGCWSSVPKLAGLqRCGKSCRLRWINYLRP 63
Cdd:smart00717   1 KGEWTEEEDELLIELVKKYGKNNWEKIAKELPG-RTAEQCRERWRNLLKP 49
Myb_DNA-bind_6 pfam13921
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 17-75 2.31e-09

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 372817 [Multi-domain]  Cd Length: 60  Bit Score: 53.08  E-value: 2.31e-09
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 226498324   17 WSPEEDEKLMNHITKHGHGcWSSVPKLAGlQRCGKSCRLRWINYLRPDLKRGAFAQDEE 75
Cdd:pfam13921   1 WTEEEDEKLLKLVEKYGND-WKQIAKELG-RRTPKQCFDRWRRKLNPKISRGPWSKEED 57
SANT smart00717
SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;
67-114 1.35e-08

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;


Pssm-ID: 197842 [Multi-domain]  Cd Length: 49  Bit Score: 50.69  E-value: 1.35e-08
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*....
gi 226498324    67 RGAFAQDEEDLIIELHAVLG-NRWSQIAAQLPGRTDNEIKNLWNSCIKK 114
Cdd:smart00717   1 KGEWTEEEDELLIELVKKYGkNNWEKIAKELPGRTAEQCRERWRNLLKP 49
SANT cd00167
'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric ...
 72-109 5.00e-08

'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.


Pssm-ID: 238096 [Multi-domain]  Cd Length: 45  Bit Score: 48.73  E-value: 5.00e-08
                         10        20        30
                 ....*....|....*....|....*....|....*....
gi 226498324  72 QDEEDLIIELHAVLG-NRWSQIAAQLPGRTDNEIKNLWN 109
Cdd:cd00167    4 EEEDELLLEAVKKYGkNNWEKIAKELPGRTPKQCRERWR 42
Myb_DNA-bind_6 pfam13921
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 70-118 9.32e-06

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 372817 [Multi-domain]  Cd Length: 60  Bit Score: 43.07  E-value: 9.32e-06
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 226498324   70 FAQDEEDLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCIKKKLRQ 118
Cdd:pfam13921   1 WTEEEDEKLLKLVEKYGNDWKQIAKELGRRTPKQCFDRWRRKLNPKISR 49
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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