NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|225903452|ref|NP_079779|]
View 

NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 11, mitochondrial-like [Mus musculus]

Protein Classification

NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 11( domain architecture ID 10562814)

mitochondrial NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 11 is an accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that functions in the transfer of electrons from NADH to the respiratory chain

Gene Ontology:  GO:0042776|GO:0032981|GO:0009060|GO:0005747

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
ESSS pfam10183
ESSS subunit of NADH:ubiquinone oxidoreductase (complex I); This subunit is part of the ...
 19-138 8.36e-52

ESSS subunit of NADH:ubiquinone oxidoreductase (complex I); This subunit is part of the mitochondrial NADH:ubiquinone oxidoreductase (complex I). It carries mitochondrial import sequences.


:

Pssm-ID: 462984  Cd Length: 115  Bit Score: 160.43  E-value: 8.36e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225903452   19 LQAAPLCWKSSSSRAVVARSAAARKEQEeptvqWMEDPDPEDENVYLKNPHFHGYDDDPKVDALNMHAVFFFGFSIALVL 98
Cdd:pfam10183   1 LSAASARWVSSSSRAVAAPSAAAGKRPP-----WQEDPEPEDENLYEKNPDSHGFDYDPVVDKWNMEAIFFFGFSIVLVL 75

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 225903452   99 GTTFVAYVPNYKMIEWARREAAMLVKHREASGLPIMESNY 138
Cdd:pfam10183  76 GSTFVAYLPDYSMQDWARREAERLLKYREAEGLPIMEENY 115
 
Name Accession Description Interval E-value
ESSS pfam10183
ESSS subunit of NADH:ubiquinone oxidoreductase (complex I); This subunit is part of the ...
 19-138 8.36e-52

ESSS subunit of NADH:ubiquinone oxidoreductase (complex I); This subunit is part of the mitochondrial NADH:ubiquinone oxidoreductase (complex I). It carries mitochondrial import sequences.


Pssm-ID: 462984  Cd Length: 115  Bit Score: 160.43  E-value: 8.36e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225903452   19 LQAAPLCWKSSSSRAVVARSAAARKEQEeptvqWMEDPDPEDENVYLKNPHFHGYDDDPKVDALNMHAVFFFGFSIALVL 98
Cdd:pfam10183   1 LSAASARWVSSSSRAVAAPSAAAGKRPP-----WQEDPEPEDENLYEKNPDSHGFDYDPVVDKWNMEAIFFFGFSIVLVL 75

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 225903452   99 GTTFVAYVPNYKMIEWARREAAMLVKHREASGLPIMESNY 138
Cdd:pfam10183  76 GSTFVAYLPDYSMQDWARREAERLLKYREAEGLPIMEENY 115
 
Name Accession Description Interval E-value
ESSS pfam10183
ESSS subunit of NADH:ubiquinone oxidoreductase (complex I); This subunit is part of the ...
 19-138 8.36e-52

ESSS subunit of NADH:ubiquinone oxidoreductase (complex I); This subunit is part of the mitochondrial NADH:ubiquinone oxidoreductase (complex I). It carries mitochondrial import sequences.


Pssm-ID: 462984  Cd Length: 115  Bit Score: 160.43  E-value: 8.36e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225903452   19 LQAAPLCWKSSSSRAVVARSAAARKEQEeptvqWMEDPDPEDENVYLKNPHFHGYDDDPKVDALNMHAVFFFGFSIALVL 98
Cdd:pfam10183   1 LSAASARWVSSSSRAVAAPSAAAGKRPP-----WQEDPEPEDENLYEKNPDSHGFDYDPVVDKWNMEAIFFFGFSIVLVL 75

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 225903452   99 GTTFVAYVPNYKMIEWARREAAMLVKHREASGLPIMESNY 138
Cdd:pfam10183  76 GSTFVAYLPDYSMQDWARREAERLLKYREAEGLPIMEENY 115
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH