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Conserved domains on  [gi|2259|emb|CAA78341|]
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TCR delta, partial [Ovis aries]

Protein Classification

immunoglobulin domain-containing family protein( domain architecture ID 34076)

immunoglobulin (Ig) domain-containing family protein is a member of a large superfamily containing cell surface antigen receptors, co-receptors and co-stimulatory molecules of the immune system, molecules involved in antigen presentation to lymphocytes, cell adhesion molecules, certain cytokine receptors and intracellular muscle proteins; immunoglobulin domains are typically divided into 4 main classes based on their structures and sequences: the Variable (V), Constant 1 (C1), Constant 2 (C2), and Intermediate (I) sets

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
Ig super family cl11960
Immunoglobulin domain; The members here are composed of the immunoglobulin (Ig) domain found ...
20-138 4.53e-39

Immunoglobulin domain; The members here are composed of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, including T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, including butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Ig superfamily (IgSF) domains can be divided into 4 main classes based on their structures and sequences: the Variable (V), Constant 1 (C1), Constant 2 (C2), and Intermediate (I) sets. Typically, the V-set domains have A, B, E, and D strands in one sheet and A', G, F, C, C' and C" in the other. The structures in C1-set are smaller than those in the V-set; they have one beta sheet that is formed by strands A, B, E, and D and the other by strands G, F, C, and C'. Moreover, a C1-set Ig domain contains a short C' strand (three residues) and lacks A' and C" strand. Unlike other Ig domain sets, C2-set structures do not have a D strand. Like the V-set Ig domains, members of the I-set have a discontinuous A strand, but lack a C" strand.


The actual alignment was detected with superfamily member cd07706:

Pssm-ID: 472250  Cd Length: 112  Bit Score: 127.64  E-value: 4.53e-39
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2259      20 QVTQSSPEQRVASGREVTLQCTFQTTYSNPDLYWYRKTPDAVFQFVLYRDntrSRDADFARGRFTVQHSVRSKTFHLVIS 99
Cdd:cd07706   1 KVTQAQPDVSVQVGEEVTLNCRYETSWTNYYLFWYKQLPSGEMTFLIRQD---SSEQNAKSGRYSVNFQKAQKSISLTIS 77
                        90       100       110
                ....*....|....*....|....*....|....*....
gi 2259     100 SVRPEDTATYYCALdlqRGIYDtTDKLTFGKGTRLIVEP 138
Cdd:cd07706  78 ALQLEDSAKYFCAL---SLPYD-TDKLIFGKGTRLTVEP 112
 
Name Accession Description Interval E-value
IgV_TCR_delta cd07706
Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain; The members here ...
20-138 4.53e-39

Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain; The members here are composed of the immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs, but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is located at the N-terminus of the receptor. Members of this group contain standard Ig superfamily V-set AGFCC'C"/DEB domain topology.


Pssm-ID: 409503  Cd Length: 112  Bit Score: 127.64  E-value: 4.53e-39
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2259      20 QVTQSSPEQRVASGREVTLQCTFQTTYSNPDLYWYRKTPDAVFQFVLYRDntrSRDADFARGRFTVQHSVRSKTFHLVIS 99
Cdd:cd07706   1 KVTQAQPDVSVQVGEEVTLNCRYETSWTNYYLFWYKQLPSGEMTFLIRQD---SSEQNAKSGRYSVNFQKAQKSISLTIS 77
                        90       100       110
                ....*....|....*....|....*....|....*....
gi 2259     100 SVRPEDTATYYCALdlqRGIYDtTDKLTFGKGTRLIVEP 138
Cdd:cd07706  78 ALQLEDSAKYFCAL---SLPYD-TDKLIFGKGTRLTVEP 112
V-set pfam07686
Immunoglobulin V-set domain; This domain is found in antibodies as well as neural protein P0 ...
23-136 1.31e-18

Immunoglobulin V-set domain; This domain is found in antibodies as well as neural protein P0 and CTL4 amongst others.


Pssm-ID: 462230  Cd Length: 109  Bit Score: 75.19  E-value: 1.31e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2259        23 QSSPEQRVASGREVTLQCTFQTTYSNPDL--YWYRKTPDAVFQFVLYRdNTRSRDADFARGRFTVQHSVRSKTFHLVISS 100
Cdd:pfam07686   1 QTPREVTVALGGSVTLPCTYSSSMSEASTsvYWYRQPPGKGPTFLIAY-YSNGSEEGVKKGRFSGRGDPSNGDGSLTIQN 79
                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 2259       101 VRPEDTATYYCALdlqrgiyDTTDKLTFGKGTRLIV 136
Cdd:pfam07686  80 LTLSDSGTYTCAV-------IPSGEGVFGKGTRLTV 108
IGv smart00406
Immunoglobulin V-Type;
36-112 1.49e-16

Immunoglobulin V-Type;


Pssm-ID: 214650  Cd Length: 81  Bit Score: 69.33  E-value: 1.49e-16
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2259         36 VTLQCTF-QTTYSNPDLYWYRKTPDAVFQFVLYRDNTRSR-DADFARGRFTVQHSVRSKTFHLVISSVRPEDTATYYCA 112
Cdd:smart00406   2 VTLSCKFsGSTFSSYYVSWVRQPPGKGLEWLGYIGSNGSSyYQESYKGRFTISKDTSKNDVSLTISNLRVEDTGTYYCA 80
 
Name Accession Description Interval E-value
IgV_TCR_delta cd07706
Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain; The members here ...
20-138 4.53e-39

Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain; The members here are composed of the immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs, but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is located at the N-terminus of the receptor. Members of this group contain standard Ig superfamily V-set AGFCC'C"/DEB domain topology.


Pssm-ID: 409503  Cd Length: 112  Bit Score: 127.64  E-value: 4.53e-39
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2259      20 QVTQSSPEQRVASGREVTLQCTFQTTYSNPDLYWYRKTPDAVFQFVLYRDntrSRDADFARGRFTVQHSVRSKTFHLVIS 99
Cdd:cd07706   1 KVTQAQPDVSVQVGEEVTLNCRYETSWTNYYLFWYKQLPSGEMTFLIRQD---SSEQNAKSGRYSVNFQKAQKSISLTIS 77
                        90       100       110
                ....*....|....*....|....*....|....*....
gi 2259     100 SVRPEDTATYYCALdlqRGIYDtTDKLTFGKGTRLIVEP 138
Cdd:cd07706  78 ALQLEDSAKYFCAL---SLPYD-TDKLIFGKGTRLTVEP 112
IgV_TCR_alpha cd04983
Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar ...
21-137 4.16e-37

Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins; The members here are composed of the immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens directly without antigen processing and recognize MHC independently of the bound peptide. Members of this group contain standard Ig superfamily V-set AGFCC'C"/DEB domain topology.


Pssm-ID: 409372 [Multi-domain]  Cd Length: 109  Bit Score: 122.38  E-value: 4.16e-37
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2259      21 VTQSSPEQRVASGREVTLQCTFQTTySNPDLYWYRKTPDAVFQFVLYRDntrSRDADFARGRFTVQHSVRSKTFHLVISS 100
Cdd:cd04983   1 VTQSPQSLSVQEGENVTLNCNYSTS-TFYYLFWYRQYPGQGPQFLIYIS---SDSGNKKKGRFSATLDKSRKSSSLHISA 76
                        90       100       110
                ....*....|....*....|....*....|....*..
gi 2259     101 VRPEDTATYYCALDLQRGiydtTDKLTFGKGTRLIVE 137
Cdd:cd04983  77 AQLSDSAVYFCALSESGG----TGKLTFGKGTRLTVE 109
IgV cd00099
Immunoglobulin variable domain (IgV); The members here are composed of the immunoglobulin ...
21-136 1.57e-32

Immunoglobulin variable domain (IgV); The members here are composed of the immunoglobulin variable domain (IgV). The IgV family contains the standard Ig superfamily V-set AGFCC'C"/DEB domain topology, and are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond. Ig superfamily (IgSF) domains can be divided into 4 main classes based on their structures and sequences: the Variable (V), Constant 1 (C1), Constant 2 (C2), and Intermediate (I) sets. Typically, the V-set domains have A, B, E and, D strands in one sheet and A', G, F, C, C', and C" strands in the other.


Pssm-ID: 409355 [Multi-domain]  Cd Length: 111  Bit Score: 110.89  E-value: 1.57e-32
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2259      21 VTQSSPEQRVASGREVTLQCTFQTTYSNPDLYWYRKTPDAVFQFVLYRDNTRSRDADFARGRFTVQHSvRSKTFHLVISS 100
Cdd:cd00099   1 VTQSPRSLSVQEGESVTLSCEVSSSFSSTYIYWYRQKPGQGPEFLIYLSSSKGKTKGGVPGRFSGSRD-GTSSFSLTISN 79
                        90       100       110
                ....*....|....*....|....*....|....*.
gi 2259     101 VRPEDTATYYCALDLQRGiydtTDKLTFGKGTRLIV 136
Cdd:cd00099  80 LQPEDSGTYYCAVSESGG----TDKLTFGSGTRLTV 111
IgV_TCR_gamma cd04982
Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain; The members here ...
27-136 5.66e-19

Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain; The members here are composed of the immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs, but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigens as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens directly without antigen processing and recognize MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is located at the N-terminus of the receptor. Members of this group contain the standard Ig superfamily V-set AGFCC'C"/DEB domain topology.


Pssm-ID: 409371  Cd Length: 117  Bit Score: 76.63  E-value: 5.66e-19
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2259      27 EQRVAS-----GREVTLQCT-FQTTYSNPDLYWYRKTPDAVFQFVLYRDNTR--SRDADFARGRFTVQHSVRSKTFHLVI 98
Cdd:cd04982   2 EQPQLSitreeSKSVTISCKvSGIDFSTTYIHWYRQKPGQALERLLYVSSTSavRKDSGKTKNKFEARKDVGKSTSTLTI 81
                        90       100       110
                ....*....|....*....|....*....|....*....
gi 2259      99 SSVRPEDTATYYCAL-DLQRGiydtTDKLTFGKGTRLIV 136
Cdd:cd04982  82 TNLEKEDSATYYCAYwESGSG----YYIKVFGSGTKLIV 116
V-set pfam07686
Immunoglobulin V-set domain; This domain is found in antibodies as well as neural protein P0 ...
23-136 1.31e-18

Immunoglobulin V-set domain; This domain is found in antibodies as well as neural protein P0 and CTL4 amongst others.


Pssm-ID: 462230  Cd Length: 109  Bit Score: 75.19  E-value: 1.31e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2259        23 QSSPEQRVASGREVTLQCTFQTTYSNPDL--YWYRKTPDAVFQFVLYRdNTRSRDADFARGRFTVQHSVRSKTFHLVISS 100
Cdd:pfam07686   1 QTPREVTVALGGSVTLPCTYSSSMSEASTsvYWYRQPPGKGPTFLIAY-YSNGSEEGVKKGRFSGRGDPSNGDGSLTIQN 79
                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 2259       101 VRPEDTATYYCALdlqrgiyDTTDKLTFGKGTRLIV 136
Cdd:pfam07686  80 LTLSDSGTYTCAV-------IPSGEGVFGKGTRLTV 108
IgV_TCR_beta cd05899
Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) beta chain; The members here ...
21-136 7.11e-17

Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) beta chain; The members here are composed of the immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens directly without antigen processing and recognize MHC independently of the bound peptide. Members of this group contain standard Ig superfamily V-set AGFCC'C"/DEB domain topology.


Pssm-ID: 409480  Cd Length: 110  Bit Score: 70.77  E-value: 7.11e-17
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2259      21 VTQSsPEQRVA-SGREVTLQCTFQTTYSNpdLYWYRKTPDAVFQFVLY-RDNTRSRDADFARGRFTVQHsVRSKTFHLVI 98
Cdd:cd05899   1 VTQS-PRYLIKrRGQSVTLRCSQKSGHDN--MYWYRQDPGKGLQLLFYsYGGGLNEEGDLPGDRFSASR-PSLTRSSLTI 76
                        90       100       110
                ....*....|....*....|....*....|....*...
gi 2259      99 SSVRPEDTATYYCALDLQRGiydtTDKLTFGKGTRLIV 136
Cdd:cd05899  77 KSAEPEDSAVYLCASSLGGG----ADEAYFGPGTRLTV 110
IGv smart00406
Immunoglobulin V-Type;
36-112 1.49e-16

Immunoglobulin V-Type;


Pssm-ID: 214650  Cd Length: 81  Bit Score: 69.33  E-value: 1.49e-16
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2259         36 VTLQCTF-QTTYSNPDLYWYRKTPDAVFQFVLYRDNTRSR-DADFARGRFTVQHSVRSKTFHLVISSVRPEDTATYYCA 112
Cdd:smart00406   2 VTLSCKFsGSTFSSYYVSWVRQPPGKGLEWLGYIGSNGSSyYQESYKGRFTISKDTSKNDVSLTISNLRVEDTGTYYCA 80
IgV_H cd04981
Immunoglobulin (Ig) heavy chain (H), variable (V) domain; The members here are composed of the ...
20-136 1.35e-13

Immunoglobulin (Ig) heavy chain (H), variable (V) domain; The members here are composed of the immunoglobulin (Ig) heavy chain (H), variable (V) domain. This group contains the standard Ig superfamily V-set AGFCC'C"/DEB domain topology. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determines the type of immunoglobulin formed: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.


Pssm-ID: 409370 [Multi-domain]  Cd Length: 118  Bit Score: 62.71  E-value: 1.35e-13
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2259      20 QVTQSSPEQrVASGREVTLQCTFQ-TTYSNPDLYWYRKTPDAVFQFV--LYRDNTRSRDADFARGRFTVQHSVRSKTFHL 96
Cdd:cd04981   1 QLQESGPGL-VKPGQSLKLSCKASgFTFTSYGMGWVRQAPGKGLEWIglIYPGGGDTYYADSFKGRFTITRDTSKSTAYL 79
                        90       100       110       120
                ....*....|....*....|....*....|....*....|
gi 2259      97 VISSVRPEDTATYYCALDLQRGIYDTTDklTFGKGTRLIV 136
Cdd:cd04981  80 QLNSLTSEDTAVYYCARGLGGYGYSYFD--YWGQGTTVTV 117
IgV_L_lambda cd04984
Immunoglobulin (Ig) lambda light chain variable (V) domain; The members here are composed of ...
21-136 8.37e-13

Immunoglobulin (Ig) lambda light chain variable (V) domain; The members here are composed of the immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determines the type of immunoglobulin formed: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains. Members of this group contain standard Ig superfamily V-set AGFCC'C"/DEB domain topology.


Pssm-ID: 409373  Cd Length: 105  Bit Score: 60.17  E-value: 8.37e-13
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2259      21 VTQSSPEQrVASGREVTLQCTFQT-TYSNPDLYWYRKTPDAVFQFVLYRDNTRSrdaDFARGRFTvqHSVRSKTFHLVIS 99
Cdd:cd04984   2 LTQPSSLS-VSPGETVTITCTGSSgNISGNYVNWYQQKPGSAPRYLIYEDKHRP---SGIPDRFS--GSKSGNTASLTIS 75
                        90       100       110
                ....*....|....*....|....*....|....*..
gi 2259     100 SVRPEDTATYYCAldlqrgIYDTTDkLTFGKGTRLIV 136
Cdd:cd04984  76 GAQTEDEADYYCQ------VWDSNS-YVFGGGTKLTV 105
IG_like smart00410
Immunoglobulin like; IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.
25-136 2.88e-12

Immunoglobulin like; IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.


Pssm-ID: 214653 [Multi-domain]  Cd Length: 85  Bit Score: 58.29  E-value: 2.88e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2259         25 SPEQRVASGREVTLQCTFqTTYSNPDLYWYRKTPDAVFQfvlyrdntrsrdadfaRGRFTVQHSvrSKTFHLVISSVRPE 104
Cdd:smart00410   1 PPSVTVKEGESVTLSCEA-SGSPPPEVTWYKQGGKLLAE----------------SGRFSVSRS--GSTSTLTISNVTPE 61
                           90       100       110
                   ....*....|....*....|....*....|..
gi 2259        105 DTATYYCALDLQRGIYDttdkltfgKGTRLIV 136
Cdd:smart00410  62 DSGTYTCAATNSSGSAS--------SGTTLTV 85
IgV_L_kappa cd04980
Immunoglobulin (Ig) light chain, kappa type, variable (V) domain; The members here are ...
20-134 3.90e-12

Immunoglobulin (Ig) light chain, kappa type, variable (V) domain; The members here are composed of the immunoglobulin (Ig) light chain, kappa type, variable (V) domain. This group contains the standard Ig superfamily V-set AGFCC'C"/DEB domain topology. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determines the type of immunoglobulin formed: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.


Pssm-ID: 409369  Cd Length: 106  Bit Score: 58.56  E-value: 3.90e-12
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2259      20 QVTQSSPEQRVASGREVTLQCTFQTTYSNPDLYWYRKTPDAVFQFVLYRDNTRsrdADFARGRFTVQHSvrSKTFHLVIS 99
Cdd:cd04980   2 VMTQSPASLSVSPGERVTISCKASQSISSNYLAWYQQKPGQAPKLLIYYASTL---HSGVPSRFSGSGS--GTDFTLTIS 76
                        90       100       110
                ....*....|....*....|....*....|....*
gi 2259     100 SVRPEDTATYYCaldLQrgiYDTTdKLTFGKGTRL 134
Cdd:cd04980  77 SVEPEDAAVYYC---QQ---GYTF-PYTFGGGTKL 104
IgV_CD8_beta cd07700
Immunoglobulin (Ig) variable (V) domain of Cluster of Differentiation (CD) 8 beta chain; The ...
30-136 1.31e-11

Immunoglobulin (Ig) variable (V) domain of Cluster of Differentiation (CD) 8 beta chain; The members here are composed of the immunoglobulin (Ig)-like domain in Cluster of Differentiation (CD) 8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation, and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners, etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion, and a short intracellular domain. Members of this group contain standard Ig superfamily V-set AGFCC'C"/DEB domain topology.


Pssm-ID: 409497  Cd Length: 116  Bit Score: 57.46  E-value: 1.31e-11
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2259      30 VASGREVTLQCTFQTTYSNPDLYWYRK----TPDAVFQFVLYRDNTRSrdADFARG----RFTVQHSVRSKTFHLVISSV 101
Cdd:cd07700  10 VQTNQTVKMSCEAKTSPKNTRIYWLRQrqapSKDSHFEFLASWDPSKG--IVYGEGvdqeKLIILSDSDSSRYILSLMSV 87
                        90       100       110
                ....*....|....*....|....*....|....*
gi 2259     102 RPEDTATYYCALdlqrgiyDTTDKLTFGKGTRLIV 136
Cdd:cd07700  88 KPEDSGTYFCMT-------VGSPELIFGTGTKLSV 115
IgV_TCR_gammadelta cd20988
Gammadelta T-cell antigen receptor, variable (V) domain; The members here are composed of the ...
30-137 6.93e-10

Gammadelta T-cell antigen receptor, variable (V) domain; The members here are composed of the immunoglobulin (Ig) variable (V) domain of the gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs, but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is located at the N-terminus of the receptor. Members of this group contain standard Ig superfamily V-set AGFCC'C"/DEB domain topology.


Pssm-ID: 409580  Cd Length: 114  Bit Score: 52.94  E-value: 6.93e-10
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2259      30 VASGREVTLQCTFQ-TTYSNPDLYWYRKTPDAVFQFVlYRDNTRSRDADFARGRFTVQHSVRSKTFHLVISSVRpeDTAT 108
Cdd:cd20988  10 VSVGKPVTLKCSMKgEAISNYYINWYRKTQGNTMTFI-YREGGIYGPGFKDNFRGDIDSSNNLAVLKILEASER--DEGS 86
                        90       100
                ....*....|....*....|....*....
gi 2259     109 YYCALDlQRGIYDTTDKLTFGKGTRLIVE 137
Cdd:cd20988  87 YYCASD-TPGGGREYDPLIFGKGTYLTVE 114
IgV_H_TCR_mu cd16095
T-cell receptor Mu, Heavy chain, variable (V) domain; The members here are composed of the ...
32-137 1.96e-08

T-cell receptor Mu, Heavy chain, variable (V) domain; The members here are composed of the immunoglobulin (Ig) heavy chain (H), variable (V) domain of the T-cell receptor Mu. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determines the type of immunoglobulin formed: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains. Members of this group contain standard Ig superfamily V-set AGFCC'C"/DEB domain topology.


Pssm-ID: 409514  Cd Length: 115  Bit Score: 49.10  E-value: 1.96e-08
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2259      32 SGREVTLQCtfQTT---YSNPDLYWYRKTPDAVFQFVLYRDntrSRDADFARGRFTVQHSVRSKTFHLVISSVRPEDTAT 108
Cdd:cd16095  14 AGKTLSLKC--QTSgfqFNTSQLSWYLWVPGHAPLWLTSLD---HISTKVSEDRITSSREDTNSQIFLQIKGLGLRDSGQ 88
                        90       100
                ....*....|....*....|....*....
gi 2259     109 YYCALDLQRGiyDTTDKLTFGKGTRLIVE 137
Cdd:cd16095  89 YHCARRVGYG--DDTDKLIFGPGTDVIVE 115
IgV_PD1 cd16088
Immunoglobulin (Ig)-like domain of Programmed Cell Death 1 (PD1); The members here are ...
24-112 1.12e-06

Immunoglobulin (Ig)-like domain of Programmed Cell Death 1 (PD1); The members here are composed of the immunoglobulin (Ig)-like domain of Programmed Cell Death 1 (PD1; also known as CD279/cluster of differentiation 279). PD1 is a cell surface receptor that is expressed on T cells and pro-B cells. The protein's structure includes an extracellular IgV domain followed by a transmembrane region and an intracellular tail. Activation of CD4+ T cells, CD8+ T cells, NKT cells, B cells, and monocytes induces PD-1 expression, immediately after which it binds two distinct ligands, PD-L1 (also known as B7-H1 or CD274/cluster of differentiation 274) and PD-L2, also known as B7-DC. PD-1 plays an important role in down regulating the immune system by preventing the activation of T-cells, reducing autoimmunity and promoting self-tolerance. The inhibitory effect of PD-1 is accomplished by promoting apoptosis in antigen specific T-cells in lymph nodes while simultaneously reducing apoptosis in regulatory T cells. A class of drugs that target PD-1, known as the PD-1 inhibitors, activate the immune system to attack tumors and treat cancer. Comparisons between the mouse PD-1 (mPD-1) and human PD-1 (hPD-1) reveals that unlike the mPD-1 which has a conventional IgSF V-set domain, hPD-1 lacks a C" strand, and instead the C' and D strands are connected by a long and flexible loop. In addition, the BC loop is not stabilized by disulfide bonding to the F strand of the ligand binding beta sheet. These differences result in different binding affinities of human and mouse PD-1 for their ligands.


Pssm-ID: 409509  Cd Length: 112  Bit Score: 44.42  E-value: 1.12e-06
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2259      24 SSPEQ-RVASGREVTLQCTFQTTYSNPDLYWYRKTPdavfqfvlyrDNTRSRDADFA--------RGRFTVQHSVRSKTF 94
Cdd:cd16088   4 FSPALlVVTEGANATFTCSFSNTSESFVLNWYRLSP----------SNQTDKLAAFPedrsqpgqDWRFRVTQLPNGRDF 73
                        90
                ....*....|....*...
gi 2259      95 HLVISSVRPEDTATYYCA 112
Cdd:cd16088  74 HMSVVRARRNDSGTYLCG 91
Ig_3 pfam13927
Immunoglobulin domain; This family contains immunoglobulin-like domains.
20-111 2.05e-06

Immunoglobulin domain; This family contains immunoglobulin-like domains.


Pssm-ID: 464046 [Multi-domain]  Cd Length: 78  Bit Score: 42.94  E-value: 2.05e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2259        20 QVTQSSPEQRVASGREVTLQCTFqTTYSNPDLYWYRktpdavfqfvlyrDNTRSRDADFARGRFTVQHSVrsktfhLVIS 99
Cdd:pfam13927   3 VITVSPSSVTVREGETVTLTCEA-TGSPPPTITWYK-------------NGEPISSGSTRSRSLSGSNST------LTIS 62
                          90
                  ....*....|..
gi 2259       100 SVRPEDTATYYC 111
Cdd:pfam13927  63 NVTRSDAGTYTC 74
IgV_NKp30 cd20926
Immunoglobulin variable (IgV) domain of Natural Killer cell activating receptor NKp30 and ...
26-137 9.27e-06

Immunoglobulin variable (IgV) domain of Natural Killer cell activating receptor NKp30 and similar domains; The members here are composed of the immunoglobulin variable region (IgV) of Natural Killer cell activating receptor NKp30 (also known as Natural Cytotoxicity triggering Receptor 3 (NCR3)) and similar domains. NKp30 Recognizes the N-Terminal IgV Domain of B7-H6. In humans, the activating natural cytotoxicity receptor NKp30 plays a major role in NK cell-mediated tumor cell lysis. NKp30 recognizes the cell-surface protein B7-H6, which is expressed on tumor, but not healthy, cells.


Pssm-ID: 409520  Cd Length: 112  Bit Score: 41.88  E-value: 9.27e-06
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2259      26 PEQRVASGREVTLQCTFQTTYSNP---DLYWYRktpDAVFQFVLYRDNT---RSRDADFARGRFTVQHSVrsktfHLVIS 99
Cdd:cd20926   8 PEIRTLEGSSAFLPCSFNASQGRLaigSVTWFR---DEVAPGKEVRNGTpefRGRLAPLASSRFLRDHQA-----ELHIW 79
                        90       100       110
                ....*....|....*....|....*....|....*....
gi 2259     100 SVRPEDTATYYCALD-LQRGIydttdklTFGKGTRLIVE 137
Cdd:cd20926  80 DVRGHDAGIYVCRVEvLGLGV-------GTGNGTRLVVE 111
IgV_SIRP cd16097
Immunoglobulin (Ig)-like variable (V) domain of the Signal-Regulatory Protein (SIRP); The ...
20-136 1.55e-05

Immunoglobulin (Ig)-like variable (V) domain of the Signal-Regulatory Protein (SIRP); The members here are composed of the immunoglobulin (Ig)-like domain of the Signal-Regulatory Protein (SIRP). The SIRPs belong to the "paired receptors" class of membrane proteins that comprise several genes coding for proteins with similar extracellular regions, but very different transmembrane/cytoplasmic regions with different (activating or inhibitory) signaling potentials. They are commonly on NK cells, but are also on many myeloid cells. Their extracellular region contains three immunoglobulin superfamily domains, a single V-set, and two C1-set IgSF domains. Their cytoplasmic tails that contain either ITIMs or transmembrane regions have positively charged residues that allow an association with adaptor proteins, such as DAP12/KARAP, containing ITAMs. There are 3 distinct SIRP members: alpha, beta, and gamma. SIRP alpha (also known as CD172a or SRC homology 2 domain-containing protein tyrosine phosphatase substrate 1/Shps-1) is a membrane receptor that interacts with a ligand CD47 expressed on many cells and gives an inhibitory signal through immunoreceptor tyrosine-based inhibition motifs in the cytoplasmic region that interact with phosphatases SHP-1 and SHP-2. SIRP beta has a short cytoplasmic region and associates with a transmembrane adapter protein DAP12 containing immunoreceptor tyrosine-based activation motifs to give an activating signal. SIRP gamma contains a very short cytoplasmic region lacking obvious signaling motifs, but also binds CD47 with much less affinity. Members of this group contain standard Ig superfamily V-set AGFCC'C"/DEB domain topology.


Pssm-ID: 409516  Cd Length: 111  Bit Score: 41.39  E-value: 1.55e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2259      20 QVTQSSPEQRVASGREVTLQCTFQTTYSNPDLYWYRKTPDAvfQFVLYrdntRSRDADFARGRfTVQHSVRSKT--FHLV 97
Cdd:cd16097   1 QVIQPEKSVSVAAGESATLHCTVTSLIPVGPIQWFRGAGPG--RELIY----NQKEGHFPRVT-TVSDLTKRNNmdFSIR 73
                        90       100       110
                ....*....|....*....|....*....|....*....
gi 2259      98 ISSVRPEDTATYYCaLDLQRGIYDTTDkLTFGKGTRLIV 136
Cdd:cd16097  74 ISNITPADAGTYYC-VKFRKGSPDDVE-FKSGAGTELSV 110
IgV_pIgR_like cd05716
Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR) and similar proteins; The ...
33-127 4.88e-05

Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR) and similar proteins; The members here are composed of the immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR) and similar proteins. pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their C-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620-residue extracellular region, a 23-residue transmembrane region, and a 103-residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions. This group also contains the Ig-like extracellular domains of other receptors such as NK cell receptor Nkp44 and myeloid receptors, among others.


Pssm-ID: 409381  Cd Length: 100  Bit Score: 39.69  E-value: 4.88e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2259      33 GREVTLQCTFQTTYSNPDLYWYR---KTPDAVFqfvlyrdntrSRDADFARGRFTVQHSVRSKTFHLVISSVRPEDTATY 109
Cdd:cd05716  12 GGSVTIQCPYPPKYASSRKYWCKwgsEGCQTLV----------SSEGVVPGGRISLTDDPDNGVFTVTLNQLRKEDAGWY 81
                        90
                ....*....|....*...
gi 2259     110 YCALDlQRGIYDTTDKLT 127
Cdd:cd05716  82 WCGVG-DDGDRGLTVQVK 98
IgI_4_MYLK-like cd20976
Fourth Ig-like domain from smooth muscle myosin light chain kinase and similar domains ; a ...
20-127 5.28e-04

Fourth Ig-like domain from smooth muscle myosin light chain kinase and similar domains ; a member of the I-set of IgSF domains; The members here are composed of the fourth immunoglobulin (Ig)-like domain from smooth muscle myosin light chain kinase (MYLK) and similar domains. The Ig superfamily (IgSF) is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. IgSF domains can be divided into 4 main classes based on their structures and sequences: the Variable (V), Constant 1 (C1), Constant 2 (C2), and Intermediate (I) sets. Unlike the V-set, one of the distinctive features of I-set domains is the lack of a C" strand. The structure of this group shows that the fourth Ig-like domain from myosin light chain kinase lacks this strand and thus belongs to the I-set of the IgSF. I-set domains are found in several cell adhesion molecules (such as VCAM, ICAM, and MADCAM), and are also present in numerous other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1, and the signaling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis.


Pssm-ID: 409568 [Multi-domain]  Cd Length: 90  Bit Score: 36.84  E-value: 5.28e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2259      20 QVTQSSPEQRVASGREVTLQCTFQTTySNPDLYWYRKtpdavfqfvlyrdntrSRDADFARGRFTVQhsvrSKTFHLVIS 99
Cdd:cd20976   3 SFSSVPKDLEAVEGQDFVAQCSARGK-PVPRITWIRN----------------AQPLQYAADRSTCE----AGVGELHIQ 61
                        90       100
                ....*....|....*....|....*...
gi 2259     100 SVRPEDTATYYCALDLQRGIYDTTDKLT 127
Cdd:cd20976  62 DVLPEDHGTYTCLAKNAAGQVSCSAWVT 89
IgV_CD33 cd05712
Immunoglobulin Variable (IgV) domain at the N-terminus of CD33 and related Siglecs (sialic ...
30-115 1.21e-03

Immunoglobulin Variable (IgV) domain at the N-terminus of CD33 and related Siglecs (sialic acid-binding Ig-like lectins); The members here are composed of the immunoglobulin (Ig) domain at the N-terminus of Cluster of Differentiation (CD) 33 and related Siglecs (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains, an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains, followed by transmembrane and short cytoplasmic domains. Human Siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.


Pssm-ID: 409377  Cd Length: 119  Bit Score: 36.21  E-value: 1.21e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2259      30 VASGREVTLQCTFQ---TTYSNPDL--YWYRKTPD-AVFQFVLYRDNTRSRDADFaRGRFTVQHSVRSKTFHLVISSVRP 103
Cdd:cd05712  11 VQEGLCVLIPCSFSypaDYWVSNPVhgYWYRGGPYpKYRPPVATNNRTREVHEST-QGRFRLLGDPGKKNCSLSISDARP 89
                        90
                ....*....|..
gi 2259     104 EDTATYYCALDL 115
Cdd:cd05712  90 EDSGKYFFRVER 101
IgV_1_JAM1-like cd20946
First Ig-like domain of Junctional adhesion molecule-1 (JAM1)and similar domains; a member of ...
21-111 1.32e-03

First Ig-like domain of Junctional adhesion molecule-1 (JAM1)and similar domains; a member of the V-set of IgSF domains; The members here are composed of the first Ig-like domain of Junctional Adhesion Molecule-1 (JAM1)and similar domains. JAM1 is an immunoglobulin superfamily (IgSF) protein with two Ig-like domains in its extracellular region; it plays a role in the formation of endothelial and epithelial tight junction and acts as a receptor for mammalian reovirus sigma-1. The IgSF is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. The two sheets are linked together by a conserved disulfide bond between B strand and F strand. IgSF domains can be divided into 4 main classes based on their structures and sequences: the Variable (V), Constant 1 (C1), Constant 2 (C2), and Intermediate (I) sets. The first Ig-like domain of JAM1 is a member of the V-set Ig domains, having A-B-E-D strands in one beta-sheet and A'-G-F-C-C'-C" in the other.


Pssm-ID: 409538  Cd Length: 102  Bit Score: 35.98  E-value: 1.32e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2259      21 VTQSSPEQRVASGREVTLQCTFQTTYSNPDLYWyRKTPDAVfQFVLYRDNTRSrdADFArGRFTVQhsvrskTFHLVISS 100
Cdd:cd20946   2 VPSSQQVVTVVENQEVILSCKTPKKTSSPRVEW-KKLQRDV-TFVVFQNNKIQ--GDYK-GRAEIL------GTNITIKN 70
                        90
                ....*....|.
gi 2259     101 VRPEDTATYYC 111
Cdd:cd20946  71 VTRSDSGKYRC 81
IgV_CD8_alpha cd05720
Immunoglobulin (Ig)-like variable (V) domain of Cluster of Differentiation (CD) 8 alpha chain; ...
25-111 2.49e-03

Immunoglobulin (Ig)-like variable (V) domain of Cluster of Differentiation (CD) 8 alpha chain; The members here are composed of the immunoglobulin (Ig)-like variable domain of the Cluster of Differentiation (CD) 8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation, and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners, etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion, and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies. Members of this group contain standard Ig superfamily V-set AGFCC'C"/DEB domain topology.


Pssm-ID: 409385  Cd Length: 110  Bit Score: 35.54  E-value: 2.49e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2259      25 SPEQRVAS-GREVTLQCtfQTTYSNPD-LYWYRKTPDAVFQ--FVLYRdnTRSRDADFARG----RFTVQHSvrSKTFHL 96
Cdd:cd05720   4 SPRKRDAQlGQKVELVC--EVLNSVPQgCSWLFQPRGSAPQptFLLYL--SSSNKTKWAEGldskRFSGSRS--GSSYVL 77
                        90
                ....*....|....*
gi 2259      97 VISSVRPEDTATYYC 111
Cdd:cd05720  78 TLKDFRKEDEGYYFC 92
ig pfam00047
Immunoglobulin domain; Members of the immunoglobulin superfamily are found in hundreds of ...
23-111 2.52e-03

Immunoglobulin domain; Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions.


Pssm-ID: 395002  Cd Length: 86  Bit Score: 34.86  E-value: 2.52e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2259        23 QSSPEQRVASGREVTLQCTFQTTYSNPDLYWYRKtpdavfqfvlyrdntrsrDADFARGRFTVQHSVRSKTFHLVISSVR 102
Cdd:pfam00047   1 SAPPTVTVLEGDSATLTCSASTGSPGPDVTWSKE------------------GGTLIESLKVKHDNGRTTQSSLLISNVT 62

                  ....*....
gi 2259       103 PEDTATYYC 111
Cdd:pfam00047  63 KEDAGTYTC 71
Ig cd00096
Immunoglobulin domain; The members here are composed of the immunoglobulin (Ig) domain found ...
36-111 3.10e-03

Immunoglobulin domain; The members here are composed of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, including T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, including butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Ig superfamily (IgSF) domains can be divided into 4 main classes based on their structures and sequences: the Variable (V), Constant 1 (C1), Constant 2 (C2), and Intermediate (I) sets. Typically, the V-set domains have A, B, E, and D strands in one sheet and A', G, F, C, C' and C" in the other. The structures in C1-set are smaller than those in the V-set; they have one beta sheet that is formed by strands A, B, E, and D and the other by strands G, F, C, and C'. Moreover, a C1-set Ig domain contains a short C' strand (three residues) and lacks A' and C" strand. Unlike other Ig domain sets, C2-set structures do not have a D strand. Like the V-set Ig domains, members of the I-set have a discontinuous A strand, but lack a C" strand.


Pssm-ID: 409353 [Multi-domain]  Cd Length: 70  Bit Score: 34.23  E-value: 3.10e-03
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2259      36 VTLQCTFqTTYSNPDLYWYRktpdavfqfvlyrdNTRSRDADFARGRFTVQHSvrsktFHLVISSVRPEDTATYYC 111
Cdd:cd00096   1 VTLTCSA-SGNPPPTITWYK--------------NGKPLPPSSRDSRRSELGN-----GTLTISNVTLEDSGTYTC 56
IgI_Perlecan_like cd05754
Immunoglobulin (Ig)-like domain found in Perlecan and similar proteins; member of the I-set of ...
20-126 7.51e-03

Immunoglobulin (Ig)-like domain found in Perlecan and similar proteins; member of the I-set of Ig superfamily (IgSF) domains; The members here are composed of the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15) which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2. This group belongs to the I-set of IgSF domains, having A-B-E-D strands in one beta-sheet and A'-G-F-C-C' in the other. Like the V-set Ig domains, members of the I-set have a discontinuous A strand, but lack a C" strand.


Pssm-ID: 409412  Cd Length: 85  Bit Score: 33.68  E-value: 7.51e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2259      20 QVTQSSP-EQRVASGREVTLQCTFQTTYSNPDLYWYR---KTPdavfqfvlyrdntrSRDADFArGRFTvqhsvrsktfh 95
Cdd:cd05754   2 QVTVEEPrSQEVRPGADVSFICRAKSKSPAYTLVWTRvngTLP--------------SRAMDFN-GILT----------- 55
                        90       100       110
                ....*....|....*....|....*....|.
gi 2259      96 lvISSVRPEDTATYYCALDLQRGIYDTTDKL 126
Cdd:cd05754  56 --IRNVQLSDAGTYVCTGSNMLDTDEATATL 84
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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