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Conserved domains on  [gi|2258387|gb|AAD11921|]
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apocytochrome b (mitochondrion) [Reclinomonas americana]

Protein Classification

cytochrome b/b6( domain architecture ID 11475928)

cytochrome b/b6 (PetB) is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme; cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes; in plants and cyanobacteria, cytochrome b6 is analogous to cytochrome b and contains two chains: helices A-D (encoded by petB) and helices E-H (encoded by petD)

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CYTB MTH00156
cytochrome b; Provisional
 12-365 0e+00

cytochrome b; Provisional


:

Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 538.21  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2258387    12 LNSFIVDYPTPSNLSYWWNFGFIAAFCLVVQIATGIFLAMHYTPHVDLAFISVEHIMRDVNYGWLMRYIHANGASMFFIA 91
Cdd:MTH00156   4 INNSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFFFIC 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2258387    92 VYIHMFRGLYYGSYASPreFLWIIGVIILLIMILTAFMGYVLPWGQMSFWGATVITNLASAVPYIGEHIVYWLWGGFSVD 171
Cdd:MTH00156  84 IYLHIGRGIYYGSYKLK--HTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSVD 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2258387   172 NATLNRFYSLHYLFPFIIAGLVGLHLIVLHEDGSNNPLGIDSKVDKIPFYPYYYVKDLFGIVVFGLFFSVFVFFYPNLLG 251
Cdd:MTH00156 162 NATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLLG 241

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2258387   252 HPDNYIEANPLVTPPHIVPEWYFLPFYAILRSIPNKLLGVIAMLVSILILIALPFLNTSEIRSSQFRPIHRKLFWLFFVD 331
Cdd:MTH00156 242 DPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSKFRGNQFYPINKILFWIFVNI 321

                        330       340       350
                 ....*....|....*....|....*....|....
gi 2258387   332 CVILGWIGGNVPETPYLEIGQIATVFYFAYFLVF 365
Cdd:MTH00156 322 VILLTWIGARPVEEPYILTGQILTILYFLYFIIN 355
 
Name Accession Description Interval E-value
CYTB MTH00156
cytochrome b; Provisional
 12-365 0e+00

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 538.21  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2258387    12 LNSFIVDYPTPSNLSYWWNFGFIAAFCLVVQIATGIFLAMHYTPHVDLAFISVEHIMRDVNYGWLMRYIHANGASMFFIA 91
Cdd:MTH00156   4 INNSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFFFIC 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2258387    92 VYIHMFRGLYYGSYASPreFLWIIGVIILLIMILTAFMGYVLPWGQMSFWGATVITNLASAVPYIGEHIVYWLWGGFSVD 171
Cdd:MTH00156  84 IYLHIGRGIYYGSYKLK--HTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSVD 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2258387   172 NATLNRFYSLHYLFPFIIAGLVGLHLIVLHEDGSNNPLGIDSKVDKIPFYPYYYVKDLFGIVVFGLFFSVFVFFYPNLLG 251
Cdd:MTH00156 162 NATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLLG 241

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2258387   252 HPDNYIEANPLVTPPHIVPEWYFLPFYAILRSIPNKLLGVIAMLVSILILIALPFLNTSEIRSSQFRPIHRKLFWLFFVD 331
Cdd:MTH00156 242 DPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSKFRGNQFYPINKILFWIFVNI 321

                        330       340       350
                 ....*....|....*....|....*....|....
gi 2258387   332 CVILGWIGGNVPETPYLEIGQIATVFYFAYFLVF 365
Cdd:MTH00156 322 VILLTWIGARPVEEPYILTGQILTILYFLYFIIN 355
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
3-373 1.84e-165

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 468.89  E-value: 1.84e-165
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2258387    3 LLKRPLIRELNSFIVDYPTPSNLSYWWNFGFIAAFCLVVQIATGIFLAMHYTPHVDLAFISVEHIMRDVNYGWLMRYIHA 82
Cdd:COG1290  14 LDERLPLASLVREHLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHH 93

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2258387   83 NGASMFFIAVYIHMFRGLYYGSYASPREFLWIIGVIILLIMILTAFMGYVLPWGQMSFWGATVITNLASAVPYIGEHIVY 162
Cdd:COG1290  94 WGASLFFAAVYLHMFRGFFYGAYKKPRELNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVT 173

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2258387  163 WLWGGFSVDNATLNRFYSLHYL-FPFIIAGLVGLHLIVLHEDGSNNPLGID----SKVDKIPFYPYYYVKDLFGIVVFGL 237
Cdd:COG1290 174 WLFGGEFPGDATLNRFFALHVLlLPALLLALVVLHLWLLHRHGHNNPPGPErkktEKVDGVPFHPYYTVKDGFGFFVFLG 253

                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2258387  238 FFSVFVFFYPNllGHPDNYIEANPLVTPPHIVPEWYFLPFYAILRSIP--NKLLGVIAMLVSILILIALPFLNTSEIRSS 315
Cdd:COG1290 254 VFALLAFFFPI--NPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSP 331

                       330       340       350       360       370
                ....*....|....*....|....*....|....*....|....*....|....*...
gi 2258387  316 QFRPIHRKLFWLFFVDCVILGWIGGNVPetPYLEIGQIATVFYFAYFLVFIPLLGKLE 373
Cdd:COG1290 332 RYRPVRTALGVAFIVFFIVLTILGANPP--IATLLGSINTVTYFAFFLIVLPILAFIE 387
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 7-206 9.66e-95

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 281.95  E-value: 9.66e-95
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2258387    7 PLIRELNSFIVDYPTPSNLSYWWNFGFIAAFCLVVQIATGIFLAMHYTPHVDLAFISVEHIMRDVNYGWLMRYIHANGAS 86
Cdd:cd00284   1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2258387   87 MFFIAVYIHMFRGLYYGSYASPREFLWIIGVIILLIMILTAFMGYVLPWGQMSFWGATVITNLASAVPYIGEHIVYWLWG 166
Cdd:cd00284  81 MFFLMLYLHIFRGLYYGSYKKPRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWG 160

                       170       180       190       200
                ....*....|....*....|....*....|....*....|
gi 2258387  167 GFSVDNATLNRFYSLHYLFPFIIAGLVGLHLIVLHEDGSN 206
Cdd:cd00284 161 GFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
16-204 2.11e-83

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 252.30  E-value: 2.11e-83
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2258387     16 IVDYPTPSNLSYWWNFGFIAAFCLVVQIATGIFLAMHYTPHVDLAFISVEHIMRDVNYGWLMRYIHANGASMFFIAVYIH 95
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2258387     96 MFRGLYYGSYASPREFLWIIGVIILLIMILTAFMGYVLPWGQMSFWGATVITNLASAVPYIGEHIVYWLWGGFSVDNATL 175
Cdd:pfam00033  81 IFRGLYYGGFSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160

                         170       180
                  ....*....|....*....|....*....
gi 2258387    176 NRFYSLHYLFPFIIAGLVGLHLIVLHEDG 204
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 229-351 6.38e-14

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 69.06  E-value: 6.38e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2258387    229 LFGIVVFGLFFSV--FVFFYPNLLGHPdnyieANPLVTPPHIVPEWYFLPFYAILRSIPNKLLGVIAMLVSILILIALPF 306
Cdd:TIGR01156  39 IFPVVILGTIACVvgLAVLDPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPF 113

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 2258387    307 L-NTSEIRSSQFRPIHRKLFWLFFVDCVILGwIGGNVPETPYLEIG 351
Cdd:TIGR01156 114 IeNVNKFQNPFRRPVATTVFLFGTVVALWLG-IGATLPIDKSLTLG 158
 
Name Accession Description Interval E-value
CYTB MTH00156
cytochrome b; Provisional
 12-365 0e+00

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 538.21  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2258387    12 LNSFIVDYPTPSNLSYWWNFGFIAAFCLVVQIATGIFLAMHYTPHVDLAFISVEHIMRDVNYGWLMRYIHANGASMFFIA 91
Cdd:MTH00156   4 INNSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFFFIC 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2258387    92 VYIHMFRGLYYGSYASPreFLWIIGVIILLIMILTAFMGYVLPWGQMSFWGATVITNLASAVPYIGEHIVYWLWGGFSVD 171
Cdd:MTH00156  84 IYLHIGRGIYYGSYKLK--HTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSVD 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2258387   172 NATLNRFYSLHYLFPFIIAGLVGLHLIVLHEDGSNNPLGIDSKVDKIPFYPYYYVKDLFGIVVFGLFFSVFVFFYPNLLG 251
Cdd:MTH00156 162 NATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLLG 241

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2258387   252 HPDNYIEANPLVTPPHIVPEWYFLPFYAILRSIPNKLLGVIAMLVSILILIALPFLNTSEIRSSQFRPIHRKLFWLFFVD 331
Cdd:MTH00156 242 DPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSKFRGNQFYPINKILFWIFVNI 321

                        330       340       350
                 ....*....|....*....|....*....|....
gi 2258387   332 CVILGWIGGNVPETPYLEIGQIATVFYFAYFLVF 365
Cdd:MTH00156 322 VILLTWIGARPVEEPYILTGQILTILYFLYFIIN 355
CYTB MTH00119
cytochrome b; Provisional
 7-379 0e+00

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 529.47  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2258387     7 PLIRELNSFIVDYPTPSNLSYWWNFGFIAAFCLVVQIATGIFLAMHYTPHVDLAFISVEHIMRDVNYGWLMRYIHANGAS 86
Cdd:MTH00119  10 PLLKIINNSLIDLPTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGAS 89

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2258387    87 MFFIAVYIHMFRGLYYGSYASprEFLWIIGVIILLIMILTAFMGYVLPWGQMSFWGATVITNLASAVPYIGEHIVYWLWG 166
Cdd:MTH00119  90 MFFICIYLHIGRGLYYGSYLY--KETWNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLVEWIWG 167

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2258387   167 GFSVDNATLNRFYSLHYLFPFIIAGLVGLHLIVLHEDGSNNPLGIDSKVDKIPFYPYYYVKDLFGIVVFGLFFSVFVFFY 246
Cdd:MTH00119 168 GFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLLTLALFS 247

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2258387   247 PNLLGHPDNYIEANPLVTPPHIVPEWYFLPFYAILRSIPNKLLGVIAMLVSILILIALPFLNTSEIRSSQFRPIHRKLFW 326
Cdd:MTH00119 248 PNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILILFLMPFLHTSKQRSMTFRPLSQLLFW 327

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|...
gi 2258387   327 LFFVDCVILGWIGGNVPETPYLEIGQIATVFYFAYFLVFIPLLGKLESYLINL 379
Cdd:MTH00119 328 TLVANLLILTWIGSQPVEHPFIIIGQLASILYFTILLILFPLLGALENKMLNY 380
CYTB MTH00145
cytochrome b; Provisional
 5-377 0e+00

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 525.63  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2258387     5 KRPLIRELNSFIVDYPTPSNLSYWWNFGFIAAFCLVVQIATGIFLAMHYTPHVDLAFISVEHIMRDVNYGWLMRYIHANG 84
Cdd:MTH00145   8 SHPVLKVVNGSLYDLPAPVNLSIWWNFGSLLGLCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLLRSLHANG 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2258387    85 ASMFFIAVYIHMFRGLYYGSYASPRefLWIIGVIILLIMILTAFMGYVLPWGQMSFWGATVITNLASAVPYIGEHIVYWL 164
Cdd:MTH00145  88 ASFFFICIYLHIGRGLYYGSYLMQH--TWNIGVTLLLLSMGTAFLGYVLPWGQMSFWGATVITNLLSAIPYVGKMLVEWV 165

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2258387   165 WGGFSVDNATLNRFYSLHYLFPFIIAGLVGLHLIVLHEDGSNNPLGIDSKVDKIPFYPYYYVKDLFGIVVFGLFFSVFVF 244
Cdd:MTH00145 166 WGGFSVGNATLKRFFSLHFLLPFVILGLSVLHLLFLHETGSNNPLGLDSDGDKVPFHPYYTIKDLVGFVVLLFLLVFLVL 245

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2258387   245 FYPNLLGHPDNYIEANPLVTPPHIVPEWYFLPFYAILRSIPNKLLGVIAMLVSILILIALPFLNTSEIRSSQFRPIHRKL 324
Cdd:MTH00145 246 FFPNLLGDPENFIPANPMVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIVILFFLPLLHVGKFRSLSFYPLNQVL 325

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|...
gi 2258387   325 FWLFFVDCVILGWIGGNVPETPYLEIGQIATVFYFAYFLVfIPLLGKLESYLI 377
Cdd:MTH00145 326 FWIFVGNFFILTWIGACPVEEPYETIGQVFTVLYFLFFLI-LPLVQKLWDNIL 377
CYTB MTH00191
cytochrome b; Provisional
 5-368 0e+00

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 521.78  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2258387     5 KRPLIRELNSFIVDYPTPSNLSYWWNFGFIAAFCLVVQIATGIFLAMHYTPHVDLAFISVEHIMRDVNYGWLMRYIHANG 84
Cdd:MTH00191   4 THPLLKIVNGSLIDLPSPSNISYWWNFGSLLGLCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIHANG 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2258387    85 ASMFFIAVYIHMFRGLYYGSYASPRefLWIIGVIILLIMILTAFMGYVLPWGQMSFWGATVITNLASAVPYIGEHIVYWL 164
Cdd:MTH00191  84 ASFFFICIYLHIGRGLYYGSYLNKE--TWNVGVILLILSMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGDDLVQWL 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2258387   165 WGGFSVDNATLNRFYSLHYLFPFIIAGLVGLHLIVLHEDGSNNPLGIDSKVDKIPFYPYYYVKDLFGIVVFGLFFSVFVF 244
Cdd:MTH00191 162 WGGFSVDNATLTRFFTFHFLLPFLIAALSLIHLLFLHETGSNNPLGLNSDSDKIPFHPYFSYKDILGFFILLFLLLFLVL 241

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2258387   245 FYPNLLGHPDNYIEANPLVTPPHIVPEWYFLPFYAILRSIPNKLLGVIAMLVSILILIALPFLNTSEIRSSQFRPIHRKL 324
Cdd:MTH00191 242 FSPNLLGDPENFIPANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVLALVMSILVLFLLPLLHTSKQRSNTFRPLTQVV 321

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|....
gi 2258387   325 FWLFFVDCVILGWIGGNVPETPYLEIGQIATVFYFAYFLVFIPL 368
Cdd:MTH00191 322 FWLWVANFILLTWLGGQPVEDPFILLGQISSFLYFFLFLLLFPL 365
CYTB MTH00131
cytochrome b; Provisional
 7-378 0e+00

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 517.67  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2258387     7 PLIRELNSFIVDYPTPSNLSYWWNFGFIAAFCLVVQIATGIFLAMHYTPHVDLAFISVEHIMRDVNYGWLMRYIHANGAS 86
Cdd:MTH00131   9 PLLKIANDALVDLPAPSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLHANGAS 88

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2258387    87 MFFIAVYIHMFRGLYYGSYASPREflWIIGVIILLIMILTAFMGYVLPWGQMSFWGATVITNLASAVPYIGEHIVYWLWG 166
Cdd:MTH00131  89 FFFICIYLHIGRGLYYGSYLYKET--WNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQWIWG 166

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2258387   167 GFSVDNATLNRFYSLHYLFPFIIAGLVGLHLIVLHEDGSNNPLGIDSKVDKIPFYPYYYVKDLFGIVVFGLFFSVFVFFY 246
Cdd:MTH00131 167 GFSVDNATLTRFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLALTSLALFS 246

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2258387   247 PNLLGHPDNYIEANPLVTPPHIVPEWYFLPFYAILRSIPNKLLGVIAMLVSILILIALPFLNTSEIRSSQFRPIHRKLFW 326
Cdd:MTH00131 247 PNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPLTQFLFW 326

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|..
gi 2258387   327 LFFVDCVILGWIGGNVPETPYLEIGQIATVFYFAYFLVFIPLLGKLESYLIN 378
Cdd:MTH00131 327 TLVADVLILTWIGGMPVEHPFIIIGQVASVLYFSLFLVLMPLAGWLENKALE 378
CYTB MTH00100
cytochrome b; Provisional
 7-377 0e+00

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 516.11  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2258387     7 PLIRELNSFIVDYPTPSNLSYWWNFGFIAAFCLVVQIATGIFLAMHYTPHVDLAFISVEHIMRDVNYGWLMRYIHANGAS 86
Cdd:MTH00100   9 PLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGAS 88

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2258387    87 MFFIAVYIHMFRGLYYGSYASPREflWIIGVIILLIMILTAFMGYVLPWGQMSFWGATVITNLASAVPYIGEHIVYWLWG 166
Cdd:MTH00100  89 MFFICLFLHVGRGLYYGSYLFLET--WNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWG 166

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2258387   167 GFSVDNATLNRFYSLHYLFPFIIAGLVGLHLIVLHEDGSNNPLGIDSKVDKIPFYPYYYVKDLFGIVVFGLFFSVFVFFY 246
Cdd:MTH00100 167 GFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLMLLVLFS 246

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2258387   247 PNLLGHPDNYIEANPLVTPPHIVPEWYFLPFYAILRSIPNKLLGVIAMLVSILILIALPFLNTSEIRSSQFRPIHRKLFW 326
Cdd:MTH00100 247 PDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIIPLLHTSKQRSMMFRPLSQCLFW 326

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|.
gi 2258387   327 LFFVDCVILGWIGGNVPETPYLEIGQIATVFYFAYFLVFIPLLGKLESYLI 377
Cdd:MTH00100 327 LLVADLLTLTWIGGQPVEHPFIIIGQLASILYFLIILILMPIASLIENNLL 377
CYTB MTH00074
cytochrome b; Provisional
 7-379 3.16e-180

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 505.76  E-value: 3.16e-180
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2258387     7 PLIRELNSFIVDYPTPSNLSYWWNFGFIAAFCLVVQIATGIFLAMHYTPHVDLAFISVEHIMRDVNYGWLMRYIHANGAS 86
Cdd:MTH00074  10 PLLKIINNSFIDLPTPSNLSSLWNFGSLLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMRNIHANGAS 89

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2258387    87 MFFIAVYIHMFRGLYYGSYASPREflWIIGVIILLIMILTAFMGYVLPWGQMSFWGATVITNLASAVPYIGEHIVYWLWG 166
Cdd:MTH00074  90 FFFICIYLHIGRGLYYGSYMYKET--WNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDTLVQWIWG 167

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2258387   167 GFSVDNATLNRFYSLHYLFPFIIAGLVGLHLIVLHEDGSNNPLGIDSKVDKIPFYPYYYVKDLFGIVVFGLFFSVFVFFY 246
Cdd:MTH00074 168 GFSVDKATLTRFFAFHFLLPFLIAGASIIHLLFLHETGSNNPTGLNSNPDKVPFHPYFSYKDLLGFLIMLTALALLSLFS 247

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2258387   247 PNLLGHPDNYIEANPLVTPPHIVPEWYFLPFYAILRSIPNKLLGVIAMLVSILILIALPFLNTSEIRSSQFRPIHRKLFW 326
Cdd:MTH00074 248 PNLLGDPDNFTPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVLALLASILILMLIPMLHTSKQRSLMFRPLTQILFW 327

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|...
gi 2258387   327 LFFVDCVILGWIGGNVPETPYLEIGQIATVFYFAYFLVFIPLLGKLESYLINL 379
Cdd:MTH00074 328 LLVANTLILTWIGGQPVEDPFIEIGQAASILYFLLFIIIIPLTGWLENKLLKW 380
CYTB MTH00022
cytochrome b; Validated
 1-378 7.74e-179

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 502.31  E-value: 7.74e-179
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2258387     1 MRLLKR-PLIRELNSFIVDYPTPSNLSYWWNFGFIAAFCLVVQIATGIFLAMHYTPHVDLAFISVEHIMRDVNYGWLMRY 79
Cdd:MTH00022   1 MPLRKEnPLLSIVNGFLVDLPSPSNISYLWNFGSLLGLCLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRY 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2258387    80 IHANGASMFFIAVYIHMFRGLYYGSYAspREFLWIIGVIILLIMILTAFMGYVLPWGQMSFWGATVITNLASAVPYIGEH 159
Cdd:MTH00022  81 LHANGASLFFLCLYIHIGRGLYYGGYL--KFHVWNVGVVIFLLTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTD 158

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2258387   160 IVYWLWGGFSVDNATLNRFYSLHYLFPFIIAGLVGLHLIVLHEDGSNNPLGIDSKVDKIPFYPYYYVKDLFGIVVFGLFF 239
Cdd:MTH00022 159 IVQWVWGGFSVSNATLNRFFSLHFLFPFILAFLVIVHLIYLHVDGSNNPIGLNSSVDKVSFHVYYTSKDWYGIVVLFFLL 238

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2258387   240 SVFVFFYPNLLGHPDNYIEANPLVTPPHIVPEWYFLPFYAILRSIPNKLLGVIAMLVSILILIALPFLNTSEIRSSQFRP 319
Cdd:MTH00022 239 SFIVYFAPNLLGDPENFIQANSLVTPVHIQPEWYFLFAYAILRSIPNKLGGVVAMFFSILILFFLPLLHTSWLRGLTFRP 318

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 2258387   320 IHRKLFWLFFVDCVILGWIGGNVPETPYLEIGQIATVFYFAYFLVFIPLLGKLESYLIN 378
Cdd:MTH00022 319 LGRMAFWFLIVDFILLTWIGSQVVEEPFILIGQLLSFFYFFYFLVLIPLLGELENQLLF 377
CYTB MTH00016
cytochrome b; Validated
 7-377 1.84e-178

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 501.13  E-value: 1.84e-178
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2258387     7 PLIRELNSFIVDYPTPSNLSYWWNFGFIAAFCLVVQIATGIFLAMHYTPHVDLAFISVEHIMRDVNYGWLMRYIHANGAS 86
Cdd:MTH00016  10 PLIKIMNGSLVDLPAPSNLSIWWNFGSLLGLCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLLRNLHANGAS 89

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2258387    87 MFFIAVYIHMFRGLYYGSYASPRefLWIIGVIILLIMILTAFMGYVLPWGQMSFWGATVITNLASAVPYIGEHIVYWLWG 166
Cdd:MTH00016  90 FFFICLYLHIGRGIYYGSYFLME--TWNIGVILLLLTMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGKMLVQWLWG 167

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2258387   167 GFSVDNATLNRFYSLHYLFPFIIAGLVGLHLIVLHEDGSNNPLGIDSKVDKIPFYPYYYVKDLFGIVVFGLFFSVFVFFY 246
Cdd:MTH00016 168 GFSVDNATLTRFFALHFLLPFVIAALSMIHLLFLHQTGSNNPLGVNSNSDKVPFHPYYTSKDIVGFIVMLFLLLSVVLLW 247

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2258387   247 PNLLGHPDNYIEANPLVTPPHIVPEWYFLPFYAILRSIPNKLLGVIAMLVSILILIALPFLNTSEIRSSQFRPIHRKLFW 326
Cdd:MTH00016 248 PNILGDPENFIPANPLVTPTHIKPEWYFLWAYAILRSIPNKLGGVVAMFASILILFFLPFIFKQKFRGLSFYPLNQILFW 327

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|.
gi 2258387   327 LFFVDCVILGWIGGNVPETPYLEIGQIATVFYFAYFLvFIPLLGKLESYLI 377
Cdd:MTH00016 328 LLVSNFLLLTWIGGRPVEPPYEFLGQIFTVFYFFYFM-INPLLMKLWDKLL 377
CYTB MTH00034
cytochrome b; Validated
 7-378 9.39e-177

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 496.92  E-value: 9.39e-177
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2258387     7 PLIRELNSFIVDYPTPSNLSYWWNFGFIAAFCLVVQIATGIFLAMHYTPHVDLAFISVEHIMRDVNYGWLMRYIHANGAS 86
Cdd:MTH00034   9 PLFKILNSSLIDLPSPSNLSIWWNFGSLLGLCLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIHANGAS 88

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2258387    87 MFFIAVYIHMFRGLYYGSYASprEFLWIIGVIILLIMILTAFMGYVLPWGQMSFWGATVITNLASAVPYIGEHIVYWLWG 166
Cdd:MTH00034  89 LFFICLYFHIGRGLYYGSYVN--IETWNIGVILFLLTMLTAFVGYVLPWGQMSFWAATVITNLVSAVPYIGTDIVQWIWG 166

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2258387   167 GFSVDNATLNRFYSLHYLFPFIIAGLVGLHLIVLHEDGSNNPLGIDSKVDKIPFYPYYYVKDLFGIVVFGLFFSVFVFFY 246
Cdd:MTH00034 167 GFSVDNATLTRFFAFHFLFPFIIAALSIIHLLFLHQTGSNNPTGLNSNYDKVPFHTYFTTKDLVGFLILFAALSSLALLF 246

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2258387   247 PNLLGHPDNYIEANPLVTPPHIVPEWYFLPFYAILRSIPNKLLGVIAMLVSILILIALPFLNTSEIRSSQFRPIHRKLFW 326
Cdd:MTH00034 247 PTALNDPENFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVAAILVLFLVPILHTSNNQSSTFRPLSQIAFW 326

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|..
gi 2258387   327 LFFVDCVILGWIGGNVPETPYLEIGQIATVFYFAYFLVFIPLLGKLESYLIN 378
Cdd:MTH00034 327 LLIATFFILTWIGSQPVEYPFILLGQVASVLYFSLFLFFFPLISYLENKLIF 378
CYTB MTH00053
cytochrome b; Provisional
 7-379 6.62e-171

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 482.28  E-value: 6.62e-171
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2258387     7 PLIRELNSFIVDYPTPSNLSYWWNFGFIAAFCLVVQIATGIFLAMHYTPHVDLAFISVEHIMRDVNYGWLMRYIHANGAS 86
Cdd:MTH00053  10 PVISLVNSMFIDLPSPSNISYLWNFGSLLGFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFILRYLHANGAS 89

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2258387    87 MFFIAVYIHMFRGLYYGSYAspREFLWIIGVIILLIMILTAFMGYVLPWGQMSFWGATVITNLASAVPYIGEHIVYWLWG 166
Cdd:MTH00053  90 MFFLCVYFHIGRGIYYGSYT--KIIVWNVGVLIFLLMILTAFIGYVLPWGQMSFWAATVITNLLSAIPYVGDDIVRWVWG 167

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2258387   167 GFSVDNATLNRFYSLHYLFPFIIAGLVGLHLIVLHEDGSNNPLGIDSKVDKIPFYPYYYVKDLFGIVVFGLFFSVFVFFY 246
Cdd:MTH00053 168 GFSVSNATLNRFYSLHYLLPFILAGLALVHLIALHEDGSNNPIGVRSDIDKIPFHYYYVLKDLYGAVILLIILSIIVFLF 247

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2258387   247 PNLLGHPDNYIEANPLVTPPHIVPEWYFLPFYAILRSIPNKLLGVIAMLVSILILIALPFLNTSEIRSSQFRPIHRKLFW 326
Cdd:MTH00053 248 PYSLGDAENFKQANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVVALVFSILVLFFLPYLHKSRFRGLSFRPLSKILFW 327

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|...
gi 2258387   327 LFFVDCVILGWIGGNVPETPYLEIGQIATVFYFAYFLVFIPLLGKLESYLINL 379
Cdd:MTH00053 328 FLVGDFFLLTWIGGQPVEEPYILIGQIASIFYFAYFLILMPLAGYLENKLLKL 380
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
3-373 1.84e-165

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 468.89  E-value: 1.84e-165
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2258387    3 LLKRPLIRELNSFIVDYPTPSNLSYWWNFGFIAAFCLVVQIATGIFLAMHYTPHVDLAFISVEHIMRDVNYGWLMRYIHA 82
Cdd:COG1290  14 LDERLPLASLVREHLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHH 93

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2258387   83 NGASMFFIAVYIHMFRGLYYGSYASPREFLWIIGVIILLIMILTAFMGYVLPWGQMSFWGATVITNLASAVPYIGEHIVY 162
Cdd:COG1290  94 WGASLFFAAVYLHMFRGFFYGAYKKPRELNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVT 173

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2258387  163 WLWGGFSVDNATLNRFYSLHYL-FPFIIAGLVGLHLIVLHEDGSNNPLGID----SKVDKIPFYPYYYVKDLFGIVVFGL 237
Cdd:COG1290 174 WLFGGEFPGDATLNRFFALHVLlLPALLLALVVLHLWLLHRHGHNNPPGPErkktEKVDGVPFHPYYTVKDGFGFFVFLG 253

                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2258387  238 FFSVFVFFYPNllGHPDNYIEANPLVTPPHIVPEWYFLPFYAILRSIP--NKLLGVIAMLVSILILIALPFLNTSEIRSS 315
Cdd:COG1290 254 VFALLAFFFPI--NPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSP 331

                       330       340       350       360       370
                ....*....|....*....|....*....|....*....|....*....|....*...
gi 2258387  316 QFRPIHRKLFWLFFVDCVILGWIGGNVPetPYLEIGQIATVFYFAYFLVFIPLLGKLE 373
Cdd:COG1290 332 RYRPVRTALGVAFIVFFIVLTILGANPP--IATLLGSINTVTYFAFFLIVLPILAFIE 387
CYTB MTH00224
cytochrome b; Provisional
 7-378 5.05e-149

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 426.64  E-value: 5.05e-149
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2258387     7 PLIRELNSFIVDYPTPSNLSYWWNFGFIAAFCLVVQIATGIFLAMHYTPHVDLAFISVEHIMRDVNYGWLMRYIHANGAS 86
Cdd:MTH00224  10 PAIKILNGSLIDLPAPNNISIWWNYGSLLGLCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLLRSIHANGAS 89

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2258387    87 MFFIAVYIHMFRGLYYGSYASPREflWIIGVIILLIMILTAFMGYVLPWGQMSFWGATVITNLASAVPYIGEHIVYWLWG 166
Cdd:MTH00224  90 MFFLFIYLHVGRGLYYGSFNLSET--WNIGVILFILTMATAFLGYVLPWGQMSFWGATVITNLFSAIPYIGKDLVEWIWG 167

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2258387   167 GFSVDNATLNRFYSLHYLFPFIIAGLVGLHLIVLHEDGSNNPLGIDSKVDKIPFYPYYYVKDLFGIVVFGLFFSVFVFFY 246
Cdd:MTH00224 168 GFAVDNATLNRFFSFHFLLPFAIMGATILHIMFLHQTGSNNPIGINADSARIPFHPYYSIKDALGYLIAILLLSLMVLFE 247

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2258387   247 PNLLGHPDNYIEANPLVTPPHIVPEWYFLPFYAILRSIPNKLLGVIAMLVSILILIALPFLNTSEIRSSQFRPIHRKLFW 326
Cdd:MTH00224 248 PNLFTDPENFLMANPLVTPIHIKPEWYFLWMYAILRSIPNKLGGVVALFAAILILFILPLTSVMNKRSLPFYPLNQLLFW 327

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|..
gi 2258387   327 LFFVDCVILGWIGGNVPETPYLEIGQIATVFYFAYFLVfIPLLGKLESYLIN 378
Cdd:MTH00224 328 LLVTSWAILTWIGGRPVEDPFEGIGQVFTILYFSYFII-SPAISKLWDDLLN 378
CYTB MTH00033
cytochrome b; Provisional
 1-374 9.91e-132

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 382.75  E-value: 9.91e-132
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2258387     1 MRLLKRPLIRELNSfIVDYPTPSNLSYWWNFGFIAAFCLVVQIATGIFLAMHYTPHVDLAFISVEHIMRDVNYGWLMRYI 80
Cdd:MTH00033   1 MRLRKTGLLEPVND-IIDLPTPSNISYWWNFGSLLCLCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYV 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2258387    81 HANGASMFFIAVYIHMFRGLYYGSYAspREFLWIIGVIILLIMILTAFMGYVLPWGQMSFWGATVITNLASAVPYIGEHI 160
Cdd:MTH00033  80 HANGASLFFICVYCHIGRGLYYGGYS--RVLTWIVGVLIFFIMMLTAFIGYVLPWGQMSFWAATVITNLVSAIPSVGGSI 157

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2258387   161 VYWLWGGFSVDNATLNRFYSLHYLFPFIIAGLVGLHLIVLHEDGSNNPLGIDSKVDKIPFYPYYYVKDLFGIVVFGLFFs 240
Cdd:MTH00033 158 VEWIWGGFSVSNCTLNRFFSLHYLLPFVLVGLVLAHLLTLHEKGSNEPLGLVGLSDRTAFHVYFTIKDILGFLILFGVF- 236

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2258387   241 VFVFFYP---NLLGHPDNYIEANPLVTPPHIVPEWYFLPFYAILRSIPNKLLGVIAMLVSILILIALPFLNTSEIRSSQF 317
Cdd:MTH00033 237 VIIGIEPrieTLLQDPENFIQANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVLALFASILVLLLMPILDRSKIRSLTF 316

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 2258387   318 RPIHRKLFWLFFVDCVILGWIGGNVPET-PYLEIGQIATVFYFAYFLVFIPLLGKLES 374
Cdd:MTH00033 317 NPTGKFFFWFIVGDFIILTWIGSAPAGAdPYVLIGRIATIFYFGYFLVLVPLLGYLSN 374
CYTB MTH00086
cytochrome b; Provisional
 12-365 8.06e-119

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 348.85  E-value: 8.06e-119
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2258387    12 LNSFIVDYPTPSNLSYWWNFGFIAAFCLVVQIATGIFLAMHYTPHVDLAFISVEHIMRDVNYGWLMRYIHANGASMFFIA 91
Cdd:MTH00086   3 VNSLVVTLPSSKSLSYWWNFGSMLGMVLVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFFIF 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2258387    92 VYIHMFRGLYYGSYAspREFLWIIGVIILLIMILTAFMGYVLPWGQMSFWGATVITNLASAVPYIGEHIVYWLWGGFSVD 171
Cdd:MTH00086  83 LYLHIFKGLFMMSYR--LKKVWISGLTIYLLVMMEAFMGYVLVWAQMSFWAAVVITSLLSVIPIWGPSIVMWIWGGFGVS 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2258387   172 NATLNRFYSLHYLFPFIIAGLVGLHLIVLHEDGSNNPLGIDSKVDKIPFYPYYYVKDLFGIVVFgLFFSVFVFFYPNLLG 251
Cdd:MTH00086 161 SATLKFFFVLHFLLPWGLLVLVLFHLIFLHSTGSTSSLYCHGDYDKICFGPEYWNKDAYNIIFW-LVFIIFSLFYPFNLG 239

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2258387   252 HPDNYIEANPLVTPPHIVPEWYFLPFYAILRSIPNKLLGVIAMLVSILILIALPFLNTSeirSSQFRPIHRKLFWLFFVD 331
Cdd:MTH00086 240 DPEMFIEADPMMSPVHIVPEWYFLFAYAILRAIPNKVLGVIALLMSIVVFYFFIFVNNY---TSCLNKLNKFLVFSFIVV 316

                        330       340       350
                 ....*....|....*....|....*....|....
gi 2258387   332 CVILGWIGGNVPETPYLEIGQIATVFYFAYFLVF 365
Cdd:MTH00086 317 NVILSWLGQCLVEYPFLFLSQIFSFIYFFLILLM 350
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 7-206 9.66e-95

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 281.95  E-value: 9.66e-95
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2258387    7 PLIRELNSFIVDYPTPSNLSYWWNFGFIAAFCLVVQIATGIFLAMHYTPHVDLAFISVEHIMRDVNYGWLMRYIHANGAS 86
Cdd:cd00284   1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2258387   87 MFFIAVYIHMFRGLYYGSYASPREFLWIIGVIILLIMILTAFMGYVLPWGQMSFWGATVITNLASAVPYIGEHIVYWLWG 166
Cdd:cd00284  81 MFFLMLYLHIFRGLYYGSYKKPRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWG 160

                       170       180       190       200
                ....*....|....*....|....*....|....*....|
gi 2258387  167 GFSVDNATLNRFYSLHYLFPFIIAGLVGLHLIVLHEDGSN 206
Cdd:cd00284 161 GFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
16-204 2.11e-83

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 252.30  E-value: 2.11e-83
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2258387     16 IVDYPTPSNLSYWWNFGFIAAFCLVVQIATGIFLAMHYTPHVDLAFISVEHIMRDVNYGWLMRYIHANGASMFFIAVYIH 95
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2258387     96 MFRGLYYGSYASPREFLWIIGVIILLIMILTAFMGYVLPWGQMSFWGATVITNLASAVPYIGEHIVYWLWGGFSVDNATL 175
Cdd:pfam00033  81 IFRGLYYGGFSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160

                         170       180
                  ....*....|....*....|....*....
gi 2258387    176 NRFYSLHYLFPFIIAGLVGLHLIVLHEDG 204
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
CYTB MTH00046
cytochrome b; Validated
 16-365 3.22e-83

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 257.99  E-value: 3.22e-83
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2258387    16 IVDYPTPSNLSYWWNFGFIAAFCLVVQIATGIFLAMHYTPHVDLAFISVEHIMRDVNYGWLMRYIHANGASMFFIAVYIH 95
Cdd:MTH00046   9 LIDLPTNYSLNYYWCSGFVLSVFMVIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNVLFILLFIH 88

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2258387    96 MFRGLYYGSYAspREFLWIIGVIILLIMILTAFMGYVLPWGQMSFWGATVITNLASAVPYIGEHIVYWLWGGFSVDNATL 175
Cdd:MTH00046  89 MGRALYYSSYS--KKGVWNVGFILYLLVMVEAFLGYILPWHQMSYWAATVLTSIVDSVPIVGSLVYKYIVGGFSVTGVTL 166

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2258387   176 NRFYSLHYLFPFIIAGLVGLHLIVLHEDGSNNPLGI-DSKVDKIPFYPYYYVKDLFGIVVFGLFFSVFVFFYPNLLGHPD 254
Cdd:MTH00046 167 VRVFSVHICLGFVILGLMVVHLFYLHKSGSSNPLFSsNGYSDVVYFHSYFTVKDLFLFMVVCSLLVFWLFVSPDLVLDIE 246

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2258387   255 NYIEANPLVTPPHIVPEWYFLPFYAILRSIPNKLLGVIaMLVSILILIALPFLNTSEIRSSqFRPIhrkLFWLFFVDCVI 334
Cdd:MTH00046 247 AYLEADPLVTPVSIKPEWYFLAFYAMLRSINSKIGGLV-LVLSFLFFLWVPTFNGSSVYSV-WRQV---NFWLIVSLFFS 321

                        330       340       350
                 ....*....|....*....|....*....|.
gi 2258387   335 LGWIGGNVPETPYLEIGQIATVFYFAYFLVF 365
Cdd:MTH00046 322 LSYLGGCHPEYPYLLISQLFSVLMVLLLFIF 352
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 207-354 2.53e-53

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 173.60  E-value: 2.53e-53
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2258387  207 NPLGIDSKVDKIPFYPYYYVKDLFGIVVFGLFFSVFVFFYPNLLGHPDNYIEANPLVTPPHIVPEWYFLPFYAILRSIPN 286
Cdd:cd00290   1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80

                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2258387  287 KLLGVIAMLVSILILIALPFLNTSEIRsSQFRPIHRKLFWLFFVDCVILGWIGGNVPETPYLEIGQIA 354
Cdd:cd00290  81 KLLGVLAMAASILSLFLVPFLENSNKR-SQFRPLRPTAFWVFLAGTLVLGWLGIQPVEYPFSLILQLF 147
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
258-358 1.65e-49

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 162.26  E-value: 1.65e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2258387    258 EANPLVTPPHIVPEWYFLPFYAILRSIPNKLLGVIAMLVSILILIALPFLNTSEIRSSQFRPIHRKLFWLFFVDCVILGW 337
Cdd:pfam00032   1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLFKIFFWLFVVDFVVLGW 80

                          90       100
                  ....*....|....*....|.
gi 2258387    338 IGGNVPETPYLEIGQIATVFY 358
Cdd:pfam00032  81 LGKQPPTGPYTLLGQIATVYY 101
PRK03735 PRK03735
cytochrome b6; Provisional
 31-209 2.75e-48

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 163.34  E-value: 2.75e-48
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2258387    31 FGFIAAFCLVVQIATGIFLAMHYTPHVDLAFISVEHIMRDVNYGWLMRYIHANGASMFFIAVYIHMFRGLYYGSYASPRE 110
Cdd:PRK03735  44 FGGLTFFCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKPRE 123

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2258387   111 FLWIIGVIILLIMILTAFMGYVLPWGQMSFWGATVITNLASAVPYIGEHIVYWLWGGFSVDNATLNRFYSLH-YLFPFII 189
Cdd:PRK03735 124 LNWVVGVLIFFVTVGLGFTGYLLPWDQKAYFATKVGSQIAEAIPVIGDFIKTLLRGGEIVGAQTLTRFFAIHvFFLPWAL 203

                        170       180
                 ....*....|....*....|
gi 2258387   190 AGLVGLHLIVLHEDGSNNPL 209
Cdd:PRK03735 204 AVLMLAHFLMIRKQGISGPL 223
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
86-253 5.07e-48

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 160.87  E-value: 5.07e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2258387     86 SMFFIAVYIHMFRGLYYGSYASPREFLWIIGVIILLIMILTAFMGYVLPWGQMSFWGATVITNLASAVPYIGEHIVYWLW 165
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKPRELNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWLLF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2258387    166 GGFSVDNATLNRFYSLH-YLFPFIIAGLVGLHLIVLHEDGSNNPLGIDSKVDKIPFYPYYYVKDLFGIVVFGLFFSVFVF 244
Cdd:pfam13631  81 GGPFPGTATIPRFYALHiLLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKMLLFFLITVALLIGLAQ 160


                  ....*....
gi 2258387    245 FYPNLLGHP 253
Cdd:pfam13631 161 INPIWLGGP 169
petB CHL00070
cytochrome b6
 22-209 4.14e-41

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 144.48  E-value: 4.14e-41
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2258387    22 PSNLSYWWNFGFIAAFCLVVQIATGIFLAMHYTPHVDLAFISVEHIMRDVNYGWLMRYIHANGASMFFIAVYIHMFRGLY 101
Cdd:CHL00070  27 PPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYL 106

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2258387   102 YGSYASPREFLWIIGVIILLIMILTAFMGYVLPWGQMSFWGATVITNLASAVPYIGEHIVYWLWGGFSVDNATLNRFYSL 181
Cdd:CHL00070 107 TGGFKKPRELTWVTGVVLAVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSVSVGQSTLTRFYSL 186

                        170       180
                 ....*....|....*....|....*....
gi 2258387   182 H-YLFPFIIAGLVGLHLIVLHEDGSNNPL 209
Cdd:CHL00070 187 HtFVLPLLTAVFMLMHFLMIRKQGISGPL 215
petD CHL00058
cytochrome b6/f complex subunit IV
 229-343 9.70e-16

cytochrome b6/f complex subunit IV


Pssm-ID: 176998  Cd Length: 160  Bit Score: 73.88  E-value: 9.70e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2258387   229 LFGIVVFGLFFSV--FVFFYPNLLGHPdnyieANPLVTPPHIVPEWYFLPFYAILRSIPNKLLGVIAMLVSILILIALPF 306
Cdd:CHL00058  39 IFPVVILGTIACNvgLAVLEPSMIGEP-----ADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMASVPAGLLTVPF 113

                         90       100       110
                 ....*....|....*....|....*....|....*...
gi 2258387   307 L-NTSEIRSSQFRPIHRKLFWLFFVDCVILGwIGGNVP 343
Cdd:CHL00058 114 LeNVNKFQNPFRRPVATTVFLIGTAVALWLG-IGATLP 150
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 229-351 6.38e-14

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 69.06  E-value: 6.38e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2258387    229 LFGIVVFGLFFSV--FVFFYPNLLGHPdnyieANPLVTPPHIVPEWYFLPFYAILRSIPNKLLGVIAMLVSILILIALPF 306
Cdd:TIGR01156  39 IFPVVILGTIACVvgLAVLDPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPF 113

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 2258387    307 L-NTSEIRSSQFRPIHRKLFWLFFVDCVILGwIGGNVPETPYLEIG 351
Cdd:TIGR01156 114 IeNVNKFQNPFRRPVATTVFLFGTVVALWLG-IGATLPIDKSLTLG 158
PetD COG5679
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion]; ...
 229-351 1.32e-13

Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion];


Pssm-ID: 444393 [Multi-domain]  Cd Length: 161  Bit Score: 67.90  E-value: 1.32e-13
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2258387  229 LFGIVVFGLFFSV--FVFFYPNLLGHPdnyieANPLVTPPHIVPEWYFLPFYAILRSIPNKLLGVIAMLVSILILIALPF 306
Cdd:COG5679  40 IFPVVILGTIALCigLAVLDPAMMGEP-----ADPFATPLEILPEWYLYPVFQILRVVPNKLLGIVMMAAIPLGLMLVPF 114

                        90       100       110       120
                ....*....|....*....|....*....|....*....|....*.
gi 2258387  307 L-NTSEIRSSQFRPIHRKLFWLFFVDCVILGwIGGNVPETPYLEIG 351
Cdd:COG5679 115 IeNVNKFQNPFRRPVATAVFLFGTLVTLWLG-IGAALPIDKSLTLG 159
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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