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Concise Results
Standard Results
Full Results
photosystem I P700 apoprotein A1, partial (plastid) [Fushitsunagia catenata]
Protein Classification
photosystem I psaA/psaB family protein ( domain architecture ID 954 )
photosystem I psaA/psaB family protein may bind P700, the primary electron donor of PSI, which is a plastocyanin-ferredoxin oxidoreductase essential for light-driven electron transport, as well as the electron acceptors A0, A1 and FX
List of domain hits
Name
Accession
Description
Interval
E-value
psaB super family
cl08224
photosystem I P700 chlorophyll a apoprotein A2
1-496
0e+00
photosystem I P700 chlorophyll a apoprotein A2
The actual alignment was detected with superfamily member CHL00056 :Pssm-ID: 471792
Cd Length: 750
Bit Score: 1030.46
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225001464 1 I FSAHFGQL A IIFLW I SGMYFHGA K FSNY V AWLS N PT I IKPSAQVVWPIVGQEILNGDVGGGF Q G V QITSGFFQ L WRASG 80
Cdd:CHL00056 70 V FSAHFGQL S IIFLW L SGMYFHGA R FSNY E AWLS D PT H IKPSAQVVWPIVGQEILNGDVGGGF R G I QITSGFFQ I WRASG 149
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225001464 81 IT T EL E LY A TAIG G L FM AALM V FAGWFHYHKAAPKL E WFQ N VESM M NHHLAGLLGLG C LSWAGHQIH IA LPIN K LLDAG I 160
Cdd:CHL00056 150 IT S EL Q LY C TAIG A L VF AALM L FAGWFHYHKAAPKL A WFQ D VESM L NHHLAGLLGLG S LSWAGHQIH VS LPIN Q LLDAG V 229
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225001464 161 S P Q E L PLPHEF LV NRDL MS QLYPSF S KG IL PFFTLNW N EYSDFLTF K GGLNPVTGGLWL S D T AHHHLA L AVLFL V AGHMY 240
Cdd:CHL00056 230 D P K E I PLPHEF IL NRDL LA QLYPSF A KG LT PFFTLNW S EYSDFLTF R GGLNPVTGGLWL T D I AHHHLA I AVLFL I AGHMY 309
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225001464 241 RTNWGIGHS M KEILE G HKGPFTGEGH R GLYEILTTSWHAQLA I NLAM M GSL S IIVAHHMY A MPPYPY I ATDY P TQLSLFT 320
Cdd:CHL00056 310 RTNWGIGHS L KEILE A HKGPFTGEGH K GLYEILTTSWHAQLA L NLAM L GSL T IIVAHHMY S MPPYPY L ATDY G TQLSLFT 389
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225001464 321 HHMWIGGF C IVGA G AHA S IFMVRDY N P AQN YNN V LDRV I RHRDAIISHLNWVCIFLGFHSFGLYIHNDTM R ALGR S QDMF 400
Cdd:CHL00056 390 HHMWIGGF L IVGA A AHA A IFMVRDY D P TTR YNN L LDRV L RHRDAIISHLNWVCIFLGFHSFGLYIHNDTM S ALGR P QDMF 469
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225001464 401 SDTAIQLQP V FAQW V QN I H T LAP SN T S P NSL A TA S YIF GG - D TISI G N K I A AM P MK LGTADF M VHHIHAFTIHV A VLIL V 479
Cdd:CHL00056 470 SDTAIQLQP I FAQW I QN T H A LAP GA T A P GAT A ST S LTW GG g D LVAV G G K V A LL P IP LGTADF L VHHIHAFTIHV T VLIL L 549
490
....*....|....*..
gi 225001464 480 KG F LF S R N SRLIPDK S N 496
Cdd:CHL00056 550 KG V LF A R S SRLIPDK A N 566
Name
Accession
Description
Interval
E-value
psaA
CHL00056
photosystem I P700 chlorophyll a apoprotein A1
1-496
0e+00
photosystem I P700 chlorophyll a apoprotein A1
Pssm-ID: 176996
Cd Length: 750
Bit Score: 1030.46
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225001464 1 I FSAHFGQL A IIFLW I SGMYFHGA K FSNY V AWLS N PT I IKPSAQVVWPIVGQEILNGDVGGGF Q G V QITSGFFQ L WRASG 80
Cdd:CHL00056 70 V FSAHFGQL S IIFLW L SGMYFHGA R FSNY E AWLS D PT H IKPSAQVVWPIVGQEILNGDVGGGF R G I QITSGFFQ I WRASG 149
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225001464 81 IT T EL E LY A TAIG G L FM AALM V FAGWFHYHKAAPKL E WFQ N VESM M NHHLAGLLGLG C LSWAGHQIH IA LPIN K LLDAG I 160
Cdd:CHL00056 150 IT S EL Q LY C TAIG A L VF AALM L FAGWFHYHKAAPKL A WFQ D VESM L NHHLAGLLGLG S LSWAGHQIH VS LPIN Q LLDAG V 229
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225001464 161 S P Q E L PLPHEF LV NRDL MS QLYPSF S KG IL PFFTLNW N EYSDFLTF K GGLNPVTGGLWL S D T AHHHLA L AVLFL V AGHMY 240
Cdd:CHL00056 230 D P K E I PLPHEF IL NRDL LA QLYPSF A KG LT PFFTLNW S EYSDFLTF R GGLNPVTGGLWL T D I AHHHLA I AVLFL I AGHMY 309
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225001464 241 RTNWGIGHS M KEILE G HKGPFTGEGH R GLYEILTTSWHAQLA I NLAM M GSL S IIVAHHMY A MPPYPY I ATDY P TQLSLFT 320
Cdd:CHL00056 310 RTNWGIGHS L KEILE A HKGPFTGEGH K GLYEILTTSWHAQLA L NLAM L GSL T IIVAHHMY S MPPYPY L ATDY G TQLSLFT 389
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225001464 321 HHMWIGGF C IVGA G AHA S IFMVRDY N P AQN YNN V LDRV I RHRDAIISHLNWVCIFLGFHSFGLYIHNDTM R ALGR S QDMF 400
Cdd:CHL00056 390 HHMWIGGF L IVGA A AHA A IFMVRDY D P TTR YNN L LDRV L RHRDAIISHLNWVCIFLGFHSFGLYIHNDTM S ALGR P QDMF 469
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225001464 401 SDTAIQLQP V FAQW V QN I H T LAP SN T S P NSL A TA S YIF GG - D TISI G N K I A AM P MK LGTADF M VHHIHAFTIHV A VLIL V 479
Cdd:CHL00056 470 SDTAIQLQP I FAQW I QN T H A LAP GA T A P GAT A ST S LTW GG g D LVAV G G K V A LL P IP LGTADF L VHHIHAFTIHV T VLIL L 549
490
....*....|....*..
gi 225001464 480 KG F LF S R N SRLIPDK S N 496
Cdd:CHL00056 550 KG V LF A R S SRLIPDK A N 566
psaA
TIGR01335
photosystem I core protein PsaA; The core proteins of photosystem I are PsaA and PsaB, ...
1-496
0e+00
photosystem I core protein PsaA; The core proteins of photosystem I are PsaA and PsaB, homologous integral membrane proteins that form a heterodimer. The heterodimer binds the electron-donating chlorophyll dimer P700, as well as chlorophyll, phylloquinone, and 4FE-4S electron acceptors. This model describes PsaA only. [Energy metabolism, Photosynthesis]
Pssm-ID: 130402 [Multi-domain]
Cd Length: 752
Bit Score: 933.22
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225001464 1 IFSAHFGQL AI IF L W I SGMYFHGA K FSNY V AWLS N PT I IKPSAQVVWPIVGQEILNGDVGGGF Q G V QITSGFFQLWRASG 80
Cdd:TIGR01335 73 IFSAHFGQL SV IF I W L SGMYFHGA R FSNY E AWLS D PT H IKPSAQVVWPIVGQEILNGDVGGGF H G I QITSGFFQLWRASG 152
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225001464 81 IT T EL E LY A TAIGGL F MA A LM V FAGWFHYHKAAPKLEWFQNVESM M NHHLAGLLGLG C LSWAGHQIH IA LPINKLLDAG I 160
Cdd:TIGR01335 153 IT N EL Q LY V TAIGGL V MA G LM L FAGWFHYHKAAPKLEWFQNVESM L NHHLAGLLGLG S LSWAGHQIH VS LPINKLLDAG V 232
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225001464 161 S P QEL PLPHEF LV NR D LM S QLYPSF SK G IL PFFTLNW NE YSDFLTF K GGLNPVTGGLWLSD T AHHHLA L AVLF LV AGHMY 240
Cdd:TIGR01335 233 D P KDI PLPHEF IL NR E LM A QLYPSF AS G LT PFFTLNW GA YSDFLTF R GGLNPVTGGLWLSD I AHHHLA I AVLF II AGHMY 312
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225001464 241 RTNWGIGHS M KEILE G HKGPFTG E GH R GLYE I LTTSWHAQLAINLAM M GSLSIIVAHHMYAMPPYPY I ATDYPTQLSLFT 320
Cdd:TIGR01335 313 RTNWGIGHS I KEILE A HKGPFTG S GH K GLYE A LTTSWHAQLAINLAM L GSLSIIVAHHMYAMPPYPY L ATDYPTQLSLFT 392
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225001464 321 HHMWIGGF C IVGA G AH AS IFMVRDY N P A QNYNNVLDRVIRHRDAIISHLNWVCIFLGFHSFGLYIHNDTMRALGR S QDMF 400
Cdd:TIGR01335 393 HHMWIGGF L IVGA A AH GA IFMVRDY D P S QNYNNVLDRVIRHRDAIISHLNWVCIFLGFHSFGLYIHNDTMRALGR P QDMF 472
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225001464 401 SDTAIQLQPVFAQW V QN I HTLAP S NT S PN S LAT A SY I FGG DTISI G N K I A A MP M KLGTADFMVHHIHAFTIHV A VLIL V K 480
Cdd:TIGR01335 473 SDTAIQLQPVFAQW I QN L HTLAP G NT A PN A LAT T SY A FGG EVVAV G G K V A M MP I KLGTADFMVHHIHAFTIHV T VLIL L K 552
490
....*....|....*.
gi 225001464 481 G F LF S RNSRLIPDK S N 496
Cdd:TIGR01335 553 G V LF A RNSRLIPDK A N 568
PsaA
COG5701
Photosystem I reaction center subunit A1, PsaA [Energy production and conversion]; Photosystem ...
1-496
0e+00
Photosystem I reaction center subunit A1, PsaA [Energy production and conversion]; Photosystem I reaction center subunit A1, PsaA is part of the Pathway/BioSystem: Photosystem I
Pssm-ID: 444411
Cd Length: 755
Bit Score: 879.94
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225001464 1 IFSAHFG Q LA II F L W I SGM Y FHGA K FSNY V AWL SN PT II KPSAQVVWPIVGQEILN G DVGGGF Q G V QITSG F FQ L WRA S G 80
Cdd:COG5701 72 IFSAHFG H LA VV F I W L SGM F FHGA R FSNY T AWL AD PT GV KPSAQVVWPIVGQEILN A DVGGGF H G I QITSG L FQ M WRA W G 151
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225001464 81 IT T E LE LY A TAIG G L F MAALM V FAGWFHYHK A APKLEWFQNVESM M NHHLAGLLGLG C L S W A GH Q IH IA LP I N K LLDAG I 160
Cdd:COG5701 152 IT N E FQ LY C TAIG A L V MAALM L FAGWFHYHK R APKLEWFQNVESM L NHHLAGLLGLG S L A W T GH L IH VS LP V N A LLDAG V 231
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225001464 161 SPQEL PLPHEFL v N RD LM S QLYP S F SK G IL PFFTLNW NEY SDFLTFKGGLNPVTGGLWL S D T AHHHLA L AVLF LV AGHMY 240
Cdd:COG5701 232 AAADI PLPHEFL - N PS LM A QLYP G F AS G VG PFFTLNW GAF SDFLTFKGGLNPVTGGLWL T D I AHHHLA I AVLF II AGHMY 310
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225001464 241 RTNWGIGHSMKEILE G HKGP --- FTG - EGH R GLYE I LTTSWHAQLAINLAMMGSLSIIVAHHMYAMPPYPY I ATDYPTQL 316
Cdd:COG5701 311 RTNWGIGHSMKEILE A HKGP pll FTG p EGH K GLYE V LTTSWHAQLAINLAMMGSLSIIVAHHMYAMPPYPY L ATDYPTQL 390
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225001464 317 SLFTHHMWIGGF C IVGA G AHA S IFMVRDY N PA Q N Y NNVLDRV I RHRDAIISHLNWVCIFLGFHSFGLYIHNDTMRALGR S 396
Cdd:COG5701 391 SLFTHHMWIGGF L IVGA A AHA A IFMVRDY D PA V N Q NNVLDRV L RHRDAIISHLNWVCIFLGFHSFGLYIHNDTMRALGR P 470
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225001464 397 QDMFSDTAIQLQPVFAQW V QN I H TL AP SN - T S PN SLA T A S YI FGGD TISI G N K I A A MP MK LGTADFM V HHIHAFTIHV A V 475
Cdd:COG5701 471 QDMFSDTAIQLQPVFAQW I QN L H AS AP GT a T A PN AGG T V S EA FGGD VVAV G G K V A M MP IP LGTADFM I HHIHAFTIHV T V 550
490 500
....*....|....*....|.
gi 225001464 476 LIL V KG F LF S R N SRLIPDK S N 496
Cdd:COG5701 551 LIL L KG V LF A R S SRLIPDK A N 571
PsaA_PsaB
pfam00223
Photosystem I psaA/psaB protein;
1-496
0e+00
Photosystem I psaA/psaB protein;
Pssm-ID: 459719
Cd Length: 719
Bit Score: 822.48
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225001464 1 IFSAHFG Q LAIIFLW I SG MY FHGA K FSN YV AWL SN P TII KP S A Q VVWP IV GQEILN G -- DVG G GF Q GVQITSG F FQ L WR A 78
Cdd:pfam00223 39 IFSAHFG H LAIIFLW L SG NL FHGA W FSN FE AWL AD P LHV KP I A H VVWP HF GQEILN A ft DVG A GF P GVQITSG L FQ W WR T 118
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225001464 79 S G I TT ELE LYA T AIG G L FM AALM V FAGW F HYHK A APKLEWF Q N V ESM M NHHLAGL L GLG C L S W A GH Q IH I A L P INK LLDA 158
Cdd:pfam00223 119 I G M TT NGQ LYA G AIG L L IL AALM L FAGW L HYHK F APKLEWF K N A ESM L NHHLAGL F GLG S L A W T GH L IH V A I P ESR LLDA 198
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225001464 159 G ISPQEL PLPH E FL v N R DLM S QLYPSF SK G IL PFFT L NW NE Y S D F LTFKGGL N P V TG G LWL S D T AHHHLA L AVLF LV AGH 238
Cdd:pfam00223 199 G VAAADI PLPH P FL - N P DLM G QLYPSF AA G LG PFFT G NW GA Y A D I LTFKGGL H P Q TG S LWL T D I AHHHLA I AVLF II AGH 277
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225001464 239 MYRTN W GIGHSMKEILE G HKGP -- FTGEGH R GLYE I L TT SWHAQL AI NLAM M GS LS IIVAHHMYA M PPYPYIATDY P TQ L 316
Cdd:pfam00223 278 MYRTN F GIGHSMKEILE A HKGP gg FTGEGH K GLYE T L NN SWHAQL GL NLAM L GS VT IIVAHHMYA L PPYPYIATDY T TQ A 357
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225001464 317 S LFTHH M WIGGF CI VGA G AH AS IFMVRDY N P AQ N Y NNVLDRV IR HRDAIISHL N WVC I FLGFH S FGLY I HNDTMRA L GR S 396
Cdd:pfam00223 358 A LFTHH Q WIGGF LM VGA F AH GA IFMVRDY D P EV N K NNVLDRV LE HRDAIISHL S WVC L FLGFH T FGLY V HNDTMRA F GR P 437
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225001464 397 Q DMFSDTAI Q L Q PVFAQW V Q ---------- N IHTL AP SN T S PN SL A TA S YIF - G GD TISI G N K IAAM P MK LGTADF M VHH 465
Cdd:pfam00223 438 E DMFSDTAI L L E PVFAQW I Q aahgkalygf N LLAS AP GS T A PN AG A GV S DVW l P GD AVNV G G K VSLF P IP LGTADF L VHH 517
490 500 510
....*....|....*....|....*....|.
gi 225001464 466 I H AF T IHV A VLIL V KG F L FS R N SRL I PDK SN 496
Cdd:pfam00223 518 I I AF G IHV T VLIL L KG V L DA R S SRL M PDK KD 548
Name
Accession
Description
Interval
E-value
psaA
CHL00056
photosystem I P700 chlorophyll a apoprotein A1
1-496
0e+00
photosystem I P700 chlorophyll a apoprotein A1
Pssm-ID: 176996
Cd Length: 750
Bit Score: 1030.46
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225001464 1 I FSAHFGQL A IIFLW I SGMYFHGA K FSNY V AWLS N PT I IKPSAQVVWPIVGQEILNGDVGGGF Q G V QITSGFFQ L WRASG 80
Cdd:CHL00056 70 V FSAHFGQL S IIFLW L SGMYFHGA R FSNY E AWLS D PT H IKPSAQVVWPIVGQEILNGDVGGGF R G I QITSGFFQ I WRASG 149
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225001464 81 IT T EL E LY A TAIG G L FM AALM V FAGWFHYHKAAPKL E WFQ N VESM M NHHLAGLLGLG C LSWAGHQIH IA LPIN K LLDAG I 160
Cdd:CHL00056 150 IT S EL Q LY C TAIG A L VF AALM L FAGWFHYHKAAPKL A WFQ D VESM L NHHLAGLLGLG S LSWAGHQIH VS LPIN Q LLDAG V 229
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225001464 161 S P Q E L PLPHEF LV NRDL MS QLYPSF S KG IL PFFTLNW N EYSDFLTF K GGLNPVTGGLWL S D T AHHHLA L AVLFL V AGHMY 240
Cdd:CHL00056 230 D P K E I PLPHEF IL NRDL LA QLYPSF A KG LT PFFTLNW S EYSDFLTF R GGLNPVTGGLWL T D I AHHHLA I AVLFL I AGHMY 309
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225001464 241 RTNWGIGHS M KEILE G HKGPFTGEGH R GLYEILTTSWHAQLA I NLAM M GSL S IIVAHHMY A MPPYPY I ATDY P TQLSLFT 320
Cdd:CHL00056 310 RTNWGIGHS L KEILE A HKGPFTGEGH K GLYEILTTSWHAQLA L NLAM L GSL T IIVAHHMY S MPPYPY L ATDY G TQLSLFT 389
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225001464 321 HHMWIGGF C IVGA G AHA S IFMVRDY N P AQN YNN V LDRV I RHRDAIISHLNWVCIFLGFHSFGLYIHNDTM R ALGR S QDMF 400
Cdd:CHL00056 390 HHMWIGGF L IVGA A AHA A IFMVRDY D P TTR YNN L LDRV L RHRDAIISHLNWVCIFLGFHSFGLYIHNDTM S ALGR P QDMF 469
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225001464 401 SDTAIQLQP V FAQW V QN I H T LAP SN T S P NSL A TA S YIF GG - D TISI G N K I A AM P MK LGTADF M VHHIHAFTIHV A VLIL V 479
Cdd:CHL00056 470 SDTAIQLQP I FAQW I QN T H A LAP GA T A P GAT A ST S LTW GG g D LVAV G G K V A LL P IP LGTADF L VHHIHAFTIHV T VLIL L 549
490
....*....|....*..
gi 225001464 480 KG F LF S R N SRLIPDK S N 496
Cdd:CHL00056 550 KG V LF A R S SRLIPDK A N 566
psaA
TIGR01335
photosystem I core protein PsaA; The core proteins of photosystem I are PsaA and PsaB, ...
1-496
0e+00
photosystem I core protein PsaA; The core proteins of photosystem I are PsaA and PsaB, homologous integral membrane proteins that form a heterodimer. The heterodimer binds the electron-donating chlorophyll dimer P700, as well as chlorophyll, phylloquinone, and 4FE-4S electron acceptors. This model describes PsaA only. [Energy metabolism, Photosynthesis]
Pssm-ID: 130402 [Multi-domain]
Cd Length: 752
Bit Score: 933.22
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225001464 1 IFSAHFGQL AI IF L W I SGMYFHGA K FSNY V AWLS N PT I IKPSAQVVWPIVGQEILNGDVGGGF Q G V QITSGFFQLWRASG 80
Cdd:TIGR01335 73 IFSAHFGQL SV IF I W L SGMYFHGA R FSNY E AWLS D PT H IKPSAQVVWPIVGQEILNGDVGGGF H G I QITSGFFQLWRASG 152
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225001464 81 IT T EL E LY A TAIGGL F MA A LM V FAGWFHYHKAAPKLEWFQNVESM M NHHLAGLLGLG C LSWAGHQIH IA LPINKLLDAG I 160
Cdd:TIGR01335 153 IT N EL Q LY V TAIGGL V MA G LM L FAGWFHYHKAAPKLEWFQNVESM L NHHLAGLLGLG S LSWAGHQIH VS LPINKLLDAG V 232
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225001464 161 S P QEL PLPHEF LV NR D LM S QLYPSF SK G IL PFFTLNW NE YSDFLTF K GGLNPVTGGLWLSD T AHHHLA L AVLF LV AGHMY 240
Cdd:TIGR01335 233 D P KDI PLPHEF IL NR E LM A QLYPSF AS G LT PFFTLNW GA YSDFLTF R GGLNPVTGGLWLSD I AHHHLA I AVLF II AGHMY 312
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225001464 241 RTNWGIGHS M KEILE G HKGPFTG E GH R GLYE I LTTSWHAQLAINLAM M GSLSIIVAHHMYAMPPYPY I ATDYPTQLSLFT 320
Cdd:TIGR01335 313 RTNWGIGHS I KEILE A HKGPFTG S GH K GLYE A LTTSWHAQLAINLAM L GSLSIIVAHHMYAMPPYPY L ATDYPTQLSLFT 392
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225001464 321 HHMWIGGF C IVGA G AH AS IFMVRDY N P A QNYNNVLDRVIRHRDAIISHLNWVCIFLGFHSFGLYIHNDTMRALGR S QDMF 400
Cdd:TIGR01335 393 HHMWIGGF L IVGA A AH GA IFMVRDY D P S QNYNNVLDRVIRHRDAIISHLNWVCIFLGFHSFGLYIHNDTMRALGR P QDMF 472
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225001464 401 SDTAIQLQPVFAQW V QN I HTLAP S NT S PN S LAT A SY I FGG DTISI G N K I A A MP M KLGTADFMVHHIHAFTIHV A VLIL V K 480
Cdd:TIGR01335 473 SDTAIQLQPVFAQW I QN L HTLAP G NT A PN A LAT T SY A FGG EVVAV G G K V A M MP I KLGTADFMVHHIHAFTIHV T VLIL L K 552
490
....*....|....*.
gi 225001464 481 G F LF S RNSRLIPDK S N 496
Cdd:TIGR01335 553 G V LF A RNSRLIPDK A N 568
PsaA
COG5701
Photosystem I reaction center subunit A1, PsaA [Energy production and conversion]; Photosystem ...
1-496
0e+00
Photosystem I reaction center subunit A1, PsaA [Energy production and conversion]; Photosystem I reaction center subunit A1, PsaA is part of the Pathway/BioSystem: Photosystem I
Pssm-ID: 444411
Cd Length: 755
Bit Score: 879.94
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225001464 1 IFSAHFG Q LA II F L W I SGM Y FHGA K FSNY V AWL SN PT II KPSAQVVWPIVGQEILN G DVGGGF Q G V QITSG F FQ L WRA S G 80
Cdd:COG5701 72 IFSAHFG H LA VV F I W L SGM F FHGA R FSNY T AWL AD PT GV KPSAQVVWPIVGQEILN A DVGGGF H G I QITSG L FQ M WRA W G 151
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225001464 81 IT T E LE LY A TAIG G L F MAALM V FAGWFHYHK A APKLEWFQNVESM M NHHLAGLLGLG C L S W A GH Q IH IA LP I N K LLDAG I 160
Cdd:COG5701 152 IT N E FQ LY C TAIG A L V MAALM L FAGWFHYHK R APKLEWFQNVESM L NHHLAGLLGLG S L A W T GH L IH VS LP V N A LLDAG V 231
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225001464 161 SPQEL PLPHEFL v N RD LM S QLYP S F SK G IL PFFTLNW NEY SDFLTFKGGLNPVTGGLWL S D T AHHHLA L AVLF LV AGHMY 240
Cdd:COG5701 232 AAADI PLPHEFL - N PS LM A QLYP G F AS G VG PFFTLNW GAF SDFLTFKGGLNPVTGGLWL T D I AHHHLA I AVLF II AGHMY 310
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225001464 241 RTNWGIGHSMKEILE G HKGP --- FTG - EGH R GLYE I LTTSWHAQLAINLAMMGSLSIIVAHHMYAMPPYPY I ATDYPTQL 316
Cdd:COG5701 311 RTNWGIGHSMKEILE A HKGP pll FTG p EGH K GLYE V LTTSWHAQLAINLAMMGSLSIIVAHHMYAMPPYPY L ATDYPTQL 390
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225001464 317 SLFTHHMWIGGF C IVGA G AHA S IFMVRDY N PA Q N Y NNVLDRV I RHRDAIISHLNWVCIFLGFHSFGLYIHNDTMRALGR S 396
Cdd:COG5701 391 SLFTHHMWIGGF L IVGA A AHA A IFMVRDY D PA V N Q NNVLDRV L RHRDAIISHLNWVCIFLGFHSFGLYIHNDTMRALGR P 470
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225001464 397 QDMFSDTAIQLQPVFAQW V QN I H TL AP SN - T S PN SLA T A S YI FGGD TISI G N K I A A MP MK LGTADFM V HHIHAFTIHV A V 475
Cdd:COG5701 471 QDMFSDTAIQLQPVFAQW I QN L H AS AP GT a T A PN AGG T V S EA FGGD VVAV G G K V A M MP IP LGTADFM I HHIHAFTIHV T V 550
490 500
....*....|....*....|.
gi 225001464 476 LIL V KG F LF S R N SRLIPDK S N 496
Cdd:COG5701 551 LIL L KG V LF A R S SRLIPDK A N 571
PsaA_PsaB
pfam00223
Photosystem I psaA/psaB protein;
1-496
0e+00
Photosystem I psaA/psaB protein;
Pssm-ID: 459719
Cd Length: 719
Bit Score: 822.48
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225001464 1 IFSAHFG Q LAIIFLW I SG MY FHGA K FSN YV AWL SN P TII KP S A Q VVWP IV GQEILN G -- DVG G GF Q GVQITSG F FQ L WR A 78
Cdd:pfam00223 39 IFSAHFG H LAIIFLW L SG NL FHGA W FSN FE AWL AD P LHV KP I A H VVWP HF GQEILN A ft DVG A GF P GVQITSG L FQ W WR T 118
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225001464 79 S G I TT ELE LYA T AIG G L FM AALM V FAGW F HYHK A APKLEWF Q N V ESM M NHHLAGL L GLG C L S W A GH Q IH I A L P INK LLDA 158
Cdd:pfam00223 119 I G M TT NGQ LYA G AIG L L IL AALM L FAGW L HYHK F APKLEWF K N A ESM L NHHLAGL F GLG S L A W T GH L IH V A I P ESR LLDA 198
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225001464 159 G ISPQEL PLPH E FL v N R DLM S QLYPSF SK G IL PFFT L NW NE Y S D F LTFKGGL N P V TG G LWL S D T AHHHLA L AVLF LV AGH 238
Cdd:pfam00223 199 G VAAADI PLPH P FL - N P DLM G QLYPSF AA G LG PFFT G NW GA Y A D I LTFKGGL H P Q TG S LWL T D I AHHHLA I AVLF II AGH 277
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225001464 239 MYRTN W GIGHSMKEILE G HKGP -- FTGEGH R GLYE I L TT SWHAQL AI NLAM M GS LS IIVAHHMYA M PPYPYIATDY P TQ L 316
Cdd:pfam00223 278 MYRTN F GIGHSMKEILE A HKGP gg FTGEGH K GLYE T L NN SWHAQL GL NLAM L GS VT IIVAHHMYA L PPYPYIATDY T TQ A 357
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225001464 317 S LFTHH M WIGGF CI VGA G AH AS IFMVRDY N P AQ N Y NNVLDRV IR HRDAIISHL N WVC I FLGFH S FGLY I HNDTMRA L GR S 396
Cdd:pfam00223 358 A LFTHH Q WIGGF LM VGA F AH GA IFMVRDY D P EV N K NNVLDRV LE HRDAIISHL S WVC L FLGFH T FGLY V HNDTMRA F GR P 437
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225001464 397 Q DMFSDTAI Q L Q PVFAQW V Q ---------- N IHTL AP SN T S PN SL A TA S YIF - G GD TISI G N K IAAM P MK LGTADF M VHH 465
Cdd:pfam00223 438 E DMFSDTAI L L E PVFAQW I Q aahgkalygf N LLAS AP GS T A PN AG A GV S DVW l P GD AVNV G G K VSLF P IP LGTADF L VHH 517
490 500 510
....*....|....*....|....*....|.
gi 225001464 466 I H AF T IHV A VLIL V KG F L FS R N SRL I PDK SN 496
Cdd:pfam00223 518 I I AF G IHV T VLIL L KG V L DA R S SRL M PDK KD 548
psaB
CHL00054
photosystem I P700 chlorophyll a apoprotein A2
1-494
5.02e-153
photosystem I P700 chlorophyll a apoprotein A2
Pssm-ID: 176995
Cd Length: 734
Bit Score: 453.41
E-value: 5.02e-153
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225001464 1 IF SA HFGQLAIIFLW I SG MY FH G A KFS N YV AW LSN P TIIK P S A QVV W - P IV GQ EILNGDVG GG FQ G - V Q I - T SG FF Q L W R 77
Cdd:CHL00054 46 IF AS HFGQLAIIFLW T SG NL FH V A WQG N FE AW VQD P LHVR P I A HAI W d P HF GQ PAVEAFTR GG AL G p V N I a Y SG VY Q W W Y 125
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225001464 78 AS G IT T ELE LY AT A IGG LF MA AL MVF AGW F H YH - K AA P KLE WF Q N V ES MM NHHL A GL L G LGC L S W A GH QI H I A L P INKLL 156
Cdd:CHL00054 126 TI G LR T NED LY TG A LFL LF LS AL SLI AGW L H LQ p K WK P SVS WF K N A ES RL NHHL S GL F G VSS L A W T GH LV H V A I P ESRGE 205
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225001464 157 DAGISPQELP LPH eflvnrdlmsqlypsf SK G IL P F FT LN WN E Y SD ------------------ F LTF K GG LN P V T GG LW 218
Cdd:CHL00054 206 HVRWNNFLDV LPH ---------------- PQ G LG P L FT GQ WN L Y AQ npdssshlfgtsqgagta I LTF L GG FH P Q T QS LW 269
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225001464 219 L S D T AHHHLA L AV L FL V AGHMYRTN W GIGHSMK E ILE G H KG P -- FT G E GH R GLY EILTT S W H A QL AIN LA MM G SLSII VA 296
Cdd:CHL00054 270 L T D I AHHHLA I AV V FL I AGHMYRTN F GIGHSMK D ILE A H IP P gg RL G R GH K GLY DTINN S L H F QL GLA LA SL G VITSL VA 349
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225001464 297 H HMY AM P P Y PY IA T D YP TQ LS L F THH MW I G GF CIV GA G AH AS IF MV RDYNP A QN YN NVL D R VIR H RD AIISHL N W VCI FL 376
Cdd:CHL00054 350 Q HMY SL P A Y AF IA Q D FT TQ AA L Y THH QY I A GF IMT GA F AH GA IF FI RDYNP E QN ED NVL A R MLD H KE AIISHL S W ASL FL 429
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225001464 377 GFH SF GLY I HND T M R A L G RSQDM fsdta I QLQ P V FAQW V Q NI H -------- T L AP S NT SP NSL A TA S YIFG G DTIS I GNK 448
Cdd:CHL00054 430 GFH TL GLY V HND V M L A F G TPEKQ ----- I LIE P I FAQW I Q SA H gktsygfd V L LS S TN SP AFN A GR S IWLP G WLNA I NEN 504
490 500 510 520
....*....|....*....|....*....|....*....|....*.
gi 225001464 449 IAAMPMKL G TA DF M VHH IH A FTI H VAV LILVKG F L FS R N S R L I PDK 494
Cdd:CHL00054 505 SNSLFLTI G PG DF L VHH AI A LGL H TTT LILVKG A L DA R G S K L M PDK 550
PsaB
COG5702
Photosystem I reaction center subunit A2, PsaB [Energy production and conversion]; Photosystem ...
1-496
1.46e-143
Photosystem I reaction center subunit A2, PsaB [Energy production and conversion]; Photosystem I reaction center subunit A2, PsaB is part of the Pathway/BioSystem: Photosystem I
Pssm-ID: 444412
Cd Length: 741
Bit Score: 429.69
E-value: 1.46e-143
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225001464 1 IF SA HFG Q LAIIFLW I SG MY FH G A KFS N YVA W LSN P TIIK P S A QVV W - P IV G QEILNGDVGG G FQG - V Q I T - SG FFQL W R 77
Cdd:COG5702 46 IF AT HFG H LAIIFLW S SG NL FH V A WQG N FEQ W IQD P LNVR P I A HAI W d P HF G KPAIEAFTQA G ASN p V N I C y SG LYHW W Y 125
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225001464 78 AS G IT T ELE LY ATA I GG L FM AA L M V FAGW F H YH - K AA P K L E WF Q N V ES MM NHHLAGL L G LGC L S W A GH QI H I A L P INKLL 156
Cdd:COG5702 126 TI G MR T NTD LY QGS I FL L LL AA V M L FAGW L H LQ p K FR P S L A WF K N A ES RL NHHLAGL F G VSS L A W T GH LV H V A I P ESRGQ 205
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225001464 157 DA G ISPQELP LPH eflvnrdlmsqlypsf SK G IL PFFT L NW NE Y SD ------------------ F LTF K GG LN P V T GG LW 218
Cdd:COG5702 206 HV G WDNFLST LPH ---------------- PA G LA PFFT G NW GV Y AQ npdtaghafgtsqgagta I LTF L GG FH P Q T ES LW 269
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225001464 219 L S D T AHHHLA L AV L F LV AGHMYRTN W GIGHS M KEILE G H K GP ------ F TG E GH R GLY EILTT S W H A QL AIN LA MM G SLS 292
Cdd:COG5702 270 L T D I AHHHLA I AV I F II AGHMYRTN F GIGHS I KEILE A H Q GP grsgff K TG L GH K GLY DTINN S L H F QL GLA LA CL G VIT 349
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225001464 293 II VA H HMYA M PPY PY IA T DY P TQ LS L F THH MW I G GF CIV GA G AH AS IF M VRDY N P AQ N YN NVL D R VIR H RD AIISHL N WV 372
Cdd:COG5702 350 SL VA Q HMYA L PPY AF IA Q DY T TQ AA L Y THH QY I A GF LMI GA F AH GA IF F VRDY D P EA N KD NVL A R MLE H KE AIISHL S WV 429
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225001464 373 CI FLGFH SF GLY I HND TMR A L G RSQDM fsdta I QLQ PVFAQ WV Q NI H ----- TLAPSNTS P N S L A TASYIFG G DTI ---- 443
Cdd:COG5702 430 SL FLGFH TL GLY V HND VVV A F G TPEKQ ----- I LIE PVFAQ FI Q AA H gkvly GIDTLLSN P D S V A STAWPNY G NVW lpgw 504
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*
gi 225001464 444 -- SIG N KIAAMPMKL G TA DF M VHH IH A FTI H VAV LILVKG F L FS R N S R L I PDK SN 496
Cdd:COG5702 505 le AVN N GANSLFLTI G PG DF L VHH AI A LGL H TTT LILVKG A L DA R G S K L M PDK KD 559
Blast search parameters
Data Source:
Precalculated data, version = cdd.v.3.21
Preset Options: Database: CDSEARCH/cdd Low complexity filter: no Composition Based Adjustment: yes E-value threshold: 0.01