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tRNA-splicing endonuclease subunit Sen2 isoform 1 [Homo sapiens]
List of domain hits
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Name | Accession | Description | Interval | E-value | |||
tRNA-intron_lyase_C | cd22363 | catalytic C-terminal domain of the tRNA-intron lyase; This C-terminal catalytic domain of tRNA ... |
339-430 | 2.66e-28 | |||
catalytic C-terminal domain of the tRNA-intron lyase; This C-terminal catalytic domain of tRNA intron endonucleases cleaves pre tRNA at the 5' and 3' splice sites to release the intron (EC:3.1.27.9). It belongs to a superfamily of nucleases including very short patch repair (Vsr) endonucleases, archaeal Holliday junction resolvases, MutH methyl-directed DNA mismatch-repair endonucleases, and catalytic domains of many restriction endonucleases, such as EcoRI, BamHI, and FokI. : Pssm-ID: 411767 Cd Length: 91 Bit Score: 107.19 E-value: 2.66e-28
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tRNA_int_endo_N | pfam02778 | tRNA intron endonuclease, N-terminal domain; Members of this family cleave pre tRNA at the 5' ... |
283-329 | 4.50e-08 | |||
tRNA intron endonuclease, N-terminal domain; Members of this family cleave pre tRNA at the 5' and 3' splice sites to release the intron EC:3.1.27.9. : Pssm-ID: 397071 Cd Length: 67 Bit Score: 49.90 E-value: 4.50e-08
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Name | Accession | Description | Interval | E-value | |||
tRNA-intron_lyase_C | cd22363 | catalytic C-terminal domain of the tRNA-intron lyase; This C-terminal catalytic domain of tRNA ... |
339-430 | 2.66e-28 | |||
catalytic C-terminal domain of the tRNA-intron lyase; This C-terminal catalytic domain of tRNA intron endonucleases cleaves pre tRNA at the 5' and 3' splice sites to release the intron (EC:3.1.27.9). It belongs to a superfamily of nucleases including very short patch repair (Vsr) endonucleases, archaeal Holliday junction resolvases, MutH methyl-directed DNA mismatch-repair endonucleases, and catalytic domains of many restriction endonucleases, such as EcoRI, BamHI, and FokI. Pssm-ID: 411767 Cd Length: 91 Bit Score: 107.19 E-value: 2.66e-28
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tRNA_int_endo | pfam01974 | tRNA intron endonuclease, catalytic C-terminal domain; Members of this family cleave pre tRNA ... |
339-422 | 1.11e-16 | |||
tRNA intron endonuclease, catalytic C-terminal domain; Members of this family cleave pre tRNA at the 5' and 3' splice sites to release the intron EC:3.1.27.9. Pssm-ID: 396521 Cd Length: 85 Bit Score: 74.60 E-value: 1.11e-16
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SEN2 | COG1676 | tRNA splicing endonuclease subunit SEN34 [Translation, ribosomal structure and biogenesis]; ... |
297-421 | 2.10e-15 | |||
tRNA splicing endonuclease subunit SEN34 [Translation, ribosomal structure and biogenesis]; tRNA splicing endonuclease subunit SEN34 is part of the Pathway/BioSystem: tRNA modification Pssm-ID: 441282 Cd Length: 173 Bit Score: 73.70 E-value: 2.10e-15
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endA | TIGR00324 | tRNA-intron lyase; The enzyme catalyses the endonucleolytic cleavage of pre tRNA at the 5' and ... |
295-423 | 1.09e-14 | |||
tRNA-intron lyase; The enzyme catalyses the endonucleolytic cleavage of pre tRNA at the 5' and 3' splice sites to release the intron and produces two half tRNA molecules bearing 5' hydroxyl and 2', 3'-cyclic phosphate termini. The genes are homologous in Eucarya and Archea. The two yeast genes have been functionally studied and are two subunits of a heterotetramer enzyme in yeast the other two subunits of which have no known homologs. [Transcription, RNA processing] Pssm-ID: 129424 Cd Length: 170 Bit Score: 71.73 E-value: 1.09e-14
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tRNA_int_endo_N | pfam02778 | tRNA intron endonuclease, N-terminal domain; Members of this family cleave pre tRNA at the 5' ... |
283-329 | 4.50e-08 | |||
tRNA intron endonuclease, N-terminal domain; Members of this family cleave pre tRNA at the 5' and 3' splice sites to release the intron EC:3.1.27.9. Pssm-ID: 397071 Cd Length: 67 Bit Score: 49.90 E-value: 4.50e-08
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PRK09300 | PRK09300 | tRNA splicing endonuclease; Reviewed |
295-371 | 1.87e-06 | |||
tRNA splicing endonuclease; Reviewed Pssm-ID: 236460 [Multi-domain] Cd Length: 330 Bit Score: 49.59 E-value: 1.87e-06
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Name | Accession | Description | Interval | E-value | |||
tRNA-intron_lyase_C | cd22363 | catalytic C-terminal domain of the tRNA-intron lyase; This C-terminal catalytic domain of tRNA ... |
339-430 | 2.66e-28 | |||
catalytic C-terminal domain of the tRNA-intron lyase; This C-terminal catalytic domain of tRNA intron endonucleases cleaves pre tRNA at the 5' and 3' splice sites to release the intron (EC:3.1.27.9). It belongs to a superfamily of nucleases including very short patch repair (Vsr) endonucleases, archaeal Holliday junction resolvases, MutH methyl-directed DNA mismatch-repair endonucleases, and catalytic domains of many restriction endonucleases, such as EcoRI, BamHI, and FokI. Pssm-ID: 411767 Cd Length: 91 Bit Score: 107.19 E-value: 2.66e-28
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tRNA_int_endo | pfam01974 | tRNA intron endonuclease, catalytic C-terminal domain; Members of this family cleave pre tRNA ... |
339-422 | 1.11e-16 | |||
tRNA intron endonuclease, catalytic C-terminal domain; Members of this family cleave pre tRNA at the 5' and 3' splice sites to release the intron EC:3.1.27.9. Pssm-ID: 396521 Cd Length: 85 Bit Score: 74.60 E-value: 1.11e-16
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SEN2 | COG1676 | tRNA splicing endonuclease subunit SEN34 [Translation, ribosomal structure and biogenesis]; ... |
297-421 | 2.10e-15 | |||
tRNA splicing endonuclease subunit SEN34 [Translation, ribosomal structure and biogenesis]; tRNA splicing endonuclease subunit SEN34 is part of the Pathway/BioSystem: tRNA modification Pssm-ID: 441282 Cd Length: 173 Bit Score: 73.70 E-value: 2.10e-15
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endA | TIGR00324 | tRNA-intron lyase; The enzyme catalyses the endonucleolytic cleavage of pre tRNA at the 5' and ... |
295-423 | 1.09e-14 | |||
tRNA-intron lyase; The enzyme catalyses the endonucleolytic cleavage of pre tRNA at the 5' and 3' splice sites to release the intron and produces two half tRNA molecules bearing 5' hydroxyl and 2', 3'-cyclic phosphate termini. The genes are homologous in Eucarya and Archea. The two yeast genes have been functionally studied and are two subunits of a heterotetramer enzyme in yeast the other two subunits of which have no known homologs. [Transcription, RNA processing] Pssm-ID: 129424 Cd Length: 170 Bit Score: 71.73 E-value: 1.09e-14
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tRNA_int_endo_N | pfam02778 | tRNA intron endonuclease, N-terminal domain; Members of this family cleave pre tRNA at the 5' ... |
283-329 | 4.50e-08 | |||
tRNA intron endonuclease, N-terminal domain; Members of this family cleave pre tRNA at the 5' and 3' splice sites to release the intron EC:3.1.27.9. Pssm-ID: 397071 Cd Length: 67 Bit Score: 49.90 E-value: 4.50e-08
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PRK09300 | PRK09300 | tRNA splicing endonuclease; Reviewed |
295-371 | 1.87e-06 | |||
tRNA splicing endonuclease; Reviewed Pssm-ID: 236460 [Multi-domain] Cd Length: 330 Bit Score: 49.59 E-value: 1.87e-06
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Blast search parameters | ||||
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