NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|221330888|ref|NP_001137893|]
View 

peptidoglycan recognition protein LD, isoform D [Drosophila melanogaster]

Protein Classification

peptidoglycan recognition protein( domain architecture ID 11274790)

peptidoglycan recognition protein (PGRP) is a pattern recognition receptor that binds and may also hydrolyze peptidoglycans (PGNs) of bacterial cell walls

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
PGRP smart00701
Animal peptidoglycan recognition proteins homologous to Bacteriophage T3 lysozyme; The ...
 169-306 4.97e-50

Animal peptidoglycan recognition proteins homologous to Bacteriophage T3 lysozyme; The bacteriophage molecule, but not its moth homologue, has been shown to have N-acetylmuramoyl-L-alanine amidase activity. One member of this family, Tag7, is a cytokine.


:

Pssm-ID: 128941  Cd Length: 142  Bit Score: 163.23  E-value: 4.97e-50
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221330888   169 LSIVGHGIWsDMELQGRgTLFDPIGVGTVIFTHTGSNECHDD--CPDVLHKLERSHVGEL-----PYNFLVAGDCQVFEA 241
Cdd:smart00701   1 PPIVPRSEW-GAKPRGH-TPRLTRPVRYVIIHHTATPNCYTDaqCAQILRNIQAYHMEELgwcdiGYNFLVGGDGKVYEG 78

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 221330888   242 QGWHYRSQYPRDLNgIDSLVMAFVGNFSGRPPIDCQLMAAQALILESLKRRILQPIYQLFVLGSY 306
Cdd:smart00701  79 RGWNVVGAHTGGYN-DISLGIAFIGNFTDKLPTDAALDAAQDLLACAVQRGHLSPDYKLVGHRQV 142
 
Name Accession Description Interval E-value
PGRP smart00701
Animal peptidoglycan recognition proteins homologous to Bacteriophage T3 lysozyme; The ...
 169-306 4.97e-50

Animal peptidoglycan recognition proteins homologous to Bacteriophage T3 lysozyme; The bacteriophage molecule, but not its moth homologue, has been shown to have N-acetylmuramoyl-L-alanine amidase activity. One member of this family, Tag7, is a cytokine.


Pssm-ID: 128941  Cd Length: 142  Bit Score: 163.23  E-value: 4.97e-50
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221330888   169 LSIVGHGIWsDMELQGRgTLFDPIGVGTVIFTHTGSNECHDD--CPDVLHKLERSHVGEL-----PYNFLVAGDCQVFEA 241
Cdd:smart00701   1 PPIVPRSEW-GAKPRGH-TPRLTRPVRYVIIHHTATPNCYTDaqCAQILRNIQAYHMEELgwcdiGYNFLVGGDGKVYEG 78

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 221330888   242 QGWHYRSQYPRDLNgIDSLVMAFVGNFSGRPPIDCQLMAAQALILESLKRRILQPIYQLFVLGSY 306
Cdd:smart00701  79 RGWNVVGAHTGGYN-DISLGIAFIGNFTDKLPTDAALDAAQDLLACAVQRGHLSPDYKLVGHRQV 142
PGRP cd06583
Peptidoglycan recognition proteins (PGRPs) are pattern recognition receptors that bind, and in ...
 194-301 3.53e-18

Peptidoglycan recognition proteins (PGRPs) are pattern recognition receptors that bind, and in certain cases, hydrolyze peptidoglycans (PGNs) of bacterial cell walls. PGRPs have been divided into three classes: short PGRPs (PGRP-S), that are small (20 kDa) extracellular proteins; intermediate PGRPs (PGRP-I) that are 40-45 kDa and are predicted to be transmembrane proteins; and long PGRPs (PGRP-L), up to 90 kDa, which may be either intracellular or transmembrane. Several structures of PGRPs are known in insects and mammals, some bound with substrates like Muramyl Tripeptide (MTP) or Tracheal Cytotoxin (TCT). The substrate binding site is conserved in PGRP-LCx, PGRP-LE, and PGRP-Ialpha proteins. This family includes Zn-dependent N-Acetylmuramoyl-L-alanine Amidase, EC:3.5.1.28. This enzyme cleaves the amide bond between N-acetylmuramoyl and L-amino acids, preferentially D-lactyl-L-Ala, in bacterial cell walls. The structure for the bacteriophage T7 lysozyme shows that two of the conserved histidines and a cysteine are zinc binding residues. Site-directed mutagenesis of T7 lysozyme indicates that two conserved residues, a Tyr and a Lys, are important for amidase activity.


Pssm-ID: 133475 [Multi-domain]  Cd Length: 126  Bit Score: 79.25  E-value: 3.53e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221330888 194 VGTVIFTHTGSNECHDdCPDVLHKLERSHV---GELPYNFLVAGDCQVFEAQGWHYRSQYPRDLNGIDSLVMAFVGNFSG 270
Cdd:cd06583    2 VKYVVIHHTANPNCYT-AAAAVRYLQNYHMrgwSDISYHFLVGGDGRIYQGRGWNYVGWHAGGNYNSYSIGIELIGNFDG 80

                         90       100       110
                 ....*....|....*....|....*....|.
gi 221330888 271 RPPIDCQLMAAQALILESLKRRILQPIYQLF 301
Cdd:cd06583   81 GPPTAAQLEALAELLAYLVKRYGIPPDYRIV 111
Amidase_2 pfam01510
N-acetylmuramoyl-L-alanine amidase; This family includes zinc amidases that have ...
 201-300 4.91e-03

N-acetylmuramoyl-L-alanine amidase; This family includes zinc amidases that have N-acetylmuramoyl-L-alanine amidase activity EC:3.5.1.28. This enzyme domain cleaves the amide bond between N-acetylmuramoyl and L-amino acids in bacterial cell walls (preferentially: D-lactyl-L-Ala). The structure is known for the bacteriophage T7 structure and shows that two of the conserved histidines are zinc binding.


Pssm-ID: 460236 [Multi-domain]  Cd Length: 122  Bit Score: 36.56  E-value: 4.91e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221330888  201 HTGsNECHDDCPDVLHKLERSHVGELPYNFLVAGDCQVFEA-----QGWHYrsqYPRDLN----GIdslvmAFVGNFSGR 271
Cdd:pfam01510   9 HTA-GPSFAGALLPYAACIARGWSDVSYHYLIDRDGTIYQLvpengRAWHA---GNGGGNdrsiGI-----ELEGNFGGD 79

                          90       100
                  ....*....|....*....|....*....
gi 221330888  272 PPIDCQLMAAQALILESLKRRILQPIYQL 300
Cdd:pfam01510  80 PPTDAQYEALARLLADLCKRYGIPPDRRI 108
 
Name Accession Description Interval E-value
PGRP smart00701
Animal peptidoglycan recognition proteins homologous to Bacteriophage T3 lysozyme; The ...
 169-306 4.97e-50

Animal peptidoglycan recognition proteins homologous to Bacteriophage T3 lysozyme; The bacteriophage molecule, but not its moth homologue, has been shown to have N-acetylmuramoyl-L-alanine amidase activity. One member of this family, Tag7, is a cytokine.


Pssm-ID: 128941  Cd Length: 142  Bit Score: 163.23  E-value: 4.97e-50
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221330888   169 LSIVGHGIWsDMELQGRgTLFDPIGVGTVIFTHTGSNECHDD--CPDVLHKLERSHVGEL-----PYNFLVAGDCQVFEA 241
Cdd:smart00701   1 PPIVPRSEW-GAKPRGH-TPRLTRPVRYVIIHHTATPNCYTDaqCAQILRNIQAYHMEELgwcdiGYNFLVGGDGKVYEG 78

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 221330888   242 QGWHYRSQYPRDLNgIDSLVMAFVGNFSGRPPIDCQLMAAQALILESLKRRILQPIYQLFVLGSY 306
Cdd:smart00701  79 RGWNVVGAHTGGYN-DISLGIAFIGNFTDKLPTDAALDAAQDLLACAVQRGHLSPDYKLVGHRQV 142
PGRP cd06583
Peptidoglycan recognition proteins (PGRPs) are pattern recognition receptors that bind, and in ...
 194-301 3.53e-18

Peptidoglycan recognition proteins (PGRPs) are pattern recognition receptors that bind, and in certain cases, hydrolyze peptidoglycans (PGNs) of bacterial cell walls. PGRPs have been divided into three classes: short PGRPs (PGRP-S), that are small (20 kDa) extracellular proteins; intermediate PGRPs (PGRP-I) that are 40-45 kDa and are predicted to be transmembrane proteins; and long PGRPs (PGRP-L), up to 90 kDa, which may be either intracellular or transmembrane. Several structures of PGRPs are known in insects and mammals, some bound with substrates like Muramyl Tripeptide (MTP) or Tracheal Cytotoxin (TCT). The substrate binding site is conserved in PGRP-LCx, PGRP-LE, and PGRP-Ialpha proteins. This family includes Zn-dependent N-Acetylmuramoyl-L-alanine Amidase, EC:3.5.1.28. This enzyme cleaves the amide bond between N-acetylmuramoyl and L-amino acids, preferentially D-lactyl-L-Ala, in bacterial cell walls. The structure for the bacteriophage T7 lysozyme shows that two of the conserved histidines and a cysteine are zinc binding residues. Site-directed mutagenesis of T7 lysozyme indicates that two conserved residues, a Tyr and a Lys, are important for amidase activity.


Pssm-ID: 133475 [Multi-domain]  Cd Length: 126  Bit Score: 79.25  E-value: 3.53e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221330888 194 VGTVIFTHTGSNECHDdCPDVLHKLERSHV---GELPYNFLVAGDCQVFEAQGWHYRSQYPRDLNGIDSLVMAFVGNFSG 270
Cdd:cd06583    2 VKYVVIHHTANPNCYT-AAAAVRYLQNYHMrgwSDISYHFLVGGDGRIYQGRGWNYVGWHAGGNYNSYSIGIELIGNFDG 80

                         90       100       110
                 ....*....|....*....|....*....|.
gi 221330888 271 RPPIDCQLMAAQALILESLKRRILQPIYQLF 301
Cdd:cd06583   81 GPPTAAQLEALAELLAYLVKRYGIPPDYRIV 111
Ami_2 smart00644
Ami_2 domain;
196-296 2.22e-05

Ami_2 domain;


Pssm-ID: 214760 [Multi-domain]  Cd Length: 126  Bit Score: 43.12  E-value: 2.22e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221330888   196 TVIFTHTGSNEChDDCPDVLHKLERSHVGELPYNFLVAGDCQVFEAQGWHYRS-----QYPRDLNGIdSLVMAFVGNFSG 270
Cdd:smart00644   4 RGIVIHHTANSN-ASCANEARYMQNNHMNDIGYHFLVGGDGRVYQGVGWNYVAwhaggAHTPGYNDI-SIGIEFIGSFDS 81

                           90       100
                   ....*....|....*....|....*...
gi 221330888   271 R--PPIDcQLMAAQALILESLKRRILQP 296
Cdd:smart00644  82 DdePFAE-ALYAALDLLAKLLKGAGLPP 108
Amidase_2 pfam01510
N-acetylmuramoyl-L-alanine amidase; This family includes zinc amidases that have ...
 201-300 4.91e-03

N-acetylmuramoyl-L-alanine amidase; This family includes zinc amidases that have N-acetylmuramoyl-L-alanine amidase activity EC:3.5.1.28. This enzyme domain cleaves the amide bond between N-acetylmuramoyl and L-amino acids in bacterial cell walls (preferentially: D-lactyl-L-Ala). The structure is known for the bacteriophage T7 structure and shows that two of the conserved histidines are zinc binding.


Pssm-ID: 460236 [Multi-domain]  Cd Length: 122  Bit Score: 36.56  E-value: 4.91e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221330888  201 HTGsNECHDDCPDVLHKLERSHVGELPYNFLVAGDCQVFEA-----QGWHYrsqYPRDLN----GIdslvmAFVGNFSGR 271
Cdd:pfam01510   9 HTA-GPSFAGALLPYAACIARGWSDVSYHYLIDRDGTIYQLvpengRAWHA---GNGGGNdrsiGI-----ELEGNFGGD 79

                          90       100
                  ....*....|....*....|....*....
gi 221330888  272 PPIDCQLMAAQALILESLKRRILQPIYQL 300
Cdd:pfam01510  80 PPTDAQYEALARLLADLCKRYGIPPDRRI 108
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH