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Conserved domains on  [gi|221272233|sp|A8SEF7|]
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RecName: Full=NAD(P)H-quinone oxidoreductase subunit 4L, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit 4L; AltName: Full=NADH-plastoquinone oxidoreductase subunit 4L

Protein Classification

NAD(P)H-quinone oxidoreductase subunit 4L( domain architecture ID 10000006)

NAD(P)H-quinone oxidoreductase subunit 4L (ND4L) is part of the chloroplast NDH complex that shuttles electrons from NAD(P)H:plastoquinone, via FMN and iron-sulfur (Fe-S) centers, to quinones in the photosynthetic and in the chloroplast respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ndhE CHL00015
NADH dehydrogenase subunit 4L
 1-101 8.87e-50

NADH dehydrogenase subunit 4L


:

Pssm-ID: 176958  Cd Length: 101  Bit Score: 152.46  E-value: 8.87e-50
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221272233   1 MMLEHELVLSAYLFSIGIYGLITSRNMVRALMCLELILNAVNMNLVTFSDLFDSRQLKGDIFSIFVIAIAAAEAAIGPAI 80
Cdd:CHL00015   1 MMLEHVLILSAYLFSIGIYGLITSRNMVRALMCLELILNAVNINFVTFSDFFDSRQLKGDIFSIFVIAIAAAEAAIGLAI 80

                         90       100
                 ....*....|....*....|.
gi 221272233  81 VSSIYRNRRSTRINQSNLLNK 101
Cdd:CHL00015  81 VSSIYRNRKSTRINQSNLLKK 101
 
Name Accession Description Interval E-value
ndhE CHL00015
NADH dehydrogenase subunit 4L
 1-101 8.87e-50

NADH dehydrogenase subunit 4L


Pssm-ID: 176958  Cd Length: 101  Bit Score: 152.46  E-value: 8.87e-50
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221272233   1 MMLEHELVLSAYLFSIGIYGLITSRNMVRALMCLELILNAVNMNLVTFSDLFDSRQLKGDIFSIFVIAIAAAEAAIGPAI 80
Cdd:CHL00015   1 MMLEHVLILSAYLFSIGIYGLITSRNMVRALMCLELILNAVNINFVTFSDFFDSRQLKGDIFSIFVIAIAAAEAAIGLAI 80

                         90       100
                 ....*....|....*....|.
gi 221272233  81 VSSIYRNRRSTRINQSNLLNK 101
Cdd:CHL00015  81 VSSIYRNRKSTRINQSNLLKK 101
NuoK COG0713
NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K) [Energy production and conversion]; ...
 1-99 7.98e-20

NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440477  Cd Length: 99  Bit Score: 76.64  E-value: 7.98e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221272233   1 MMLEHELVLSAYLFSIGIYGLITSRNMVRALMCLELILNAVNMNLVTFSDLFDsrQLKGDIFSIFVIAIAAAEAAIGPAI 80
Cdd:COG0713    1 IPLEHYLILAAILFAIGLYGVLTRRNLIVVLMSIELMLNAVNLNLVAFSRYLG--DLDGQVFALFVIAVAAAEVAVGLAI 78

                         90
                 ....*....|....*....
gi 221272233  81 VSSIYRNRRSTRINQSNLL 99
Cdd:COG0713   79 IVALYRNRGTIDVDDLNEL 97
Oxidored_q2 pfam00420
NADH-ubiquinone/plastoquinone oxidoreductase chain 4L;
7-99 9.03e-14

NADH-ubiquinone/plastoquinone oxidoreductase chain 4L;


Pssm-ID: 425672  Cd Length: 95  Bit Score: 61.04  E-value: 9.03e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221272233    7 LVLSAYLFSIGIYGLITSRNMVRALMCLELILNAVNMNLVTFSDLFDSrqLKGDIFSIFVIAIAAAEAAIGPAIVSSIYR 86
Cdd:pfam00420   3 LLLSGLLFLIGLYGLLLRRNLLRVLLSLELMLNAVNLALVLFGRLTAD--PLPQALILTAIVIAAAEAAVGLALLVRIYR 80

                          90
                  ....*....|...
gi 221272233   87 NRRSTRINQSNLL 99
Cdd:pfam00420  81 THGTDDVDSLNLL 93
 
Name Accession Description Interval E-value
ndhE CHL00015
NADH dehydrogenase subunit 4L
 1-101 8.87e-50

NADH dehydrogenase subunit 4L


Pssm-ID: 176958  Cd Length: 101  Bit Score: 152.46  E-value: 8.87e-50
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221272233   1 MMLEHELVLSAYLFSIGIYGLITSRNMVRALMCLELILNAVNMNLVTFSDLFDSRQLKGDIFSIFVIAIAAAEAAIGPAI 80
Cdd:CHL00015   1 MMLEHVLILSAYLFSIGIYGLITSRNMVRALMCLELILNAVNINFVTFSDFFDSRQLKGDIFSIFVIAIAAAEAAIGLAI 80

                         90       100
                 ....*....|....*....|.
gi 221272233  81 VSSIYRNRRSTRINQSNLLNK 101
Cdd:CHL00015  81 VSSIYRNRKSTRINQSNLLKK 101
PRK05715 PRK05715
NADH-quinone oxidoreductase subunit NuoK;
1-99 3.99e-21

NADH-quinone oxidoreductase subunit NuoK;


Pssm-ID: 180218  Cd Length: 100  Bit Score: 79.84  E-value: 3.99e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221272233   1 MMLEHELVLSAYLFSIGIYGLITSRNMVRALMCLELILNAVNMNLVTFSDLFDsrQLKGDIFSIFVIAIAAAEAAIGPAI 80
Cdd:PRK05715   2 IPLQHYLILAAILFCIGLVGLLLRRNAIVVLMSIELMLNAVNLNFVAFSSYLG--DLDGQVFAFFVITVAAAEAAIGLAI 79

                         90
                 ....*....|....*....
gi 221272233  81 VSSIYRNRRSTRINQSNLL 99
Cdd:PRK05715  80 LLQLYRNRGTIDVDDLNEL 98
NuoK COG0713
NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K) [Energy production and conversion]; ...
 1-99 7.98e-20

NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440477  Cd Length: 99  Bit Score: 76.64  E-value: 7.98e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221272233   1 MMLEHELVLSAYLFSIGIYGLITSRNMVRALMCLELILNAVNMNLVTFSDLFDsrQLKGDIFSIFVIAIAAAEAAIGPAI 80
Cdd:COG0713    1 IPLEHYLILAAILFAIGLYGVLTRRNLIVVLMSIELMLNAVNLNLVAFSRYLG--DLDGQVFALFVIAVAAAEVAVGLAI 78

                         90
                 ....*....|....*....
gi 221272233  81 VSSIYRNRRSTRINQSNLL 99
Cdd:COG0713   79 IVALYRNRGTIDVDDLNEL 97
Oxidored_q2 pfam00420
NADH-ubiquinone/plastoquinone oxidoreductase chain 4L;
7-99 9.03e-14

NADH-ubiquinone/plastoquinone oxidoreductase chain 4L;


Pssm-ID: 425672  Cd Length: 95  Bit Score: 61.04  E-value: 9.03e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221272233    7 LVLSAYLFSIGIYGLITSRNMVRALMCLELILNAVNMNLVTFSDLFDSrqLKGDIFSIFVIAIAAAEAAIGPAIVSSIYR 86
Cdd:pfam00420   3 LLLSGLLFLIGLYGLLLRRNLLRVLLSLELMLNAVNLALVLFGRLTAD--PLPQALILTAIVIAAAEAAVGLALLVRIYR 80

                          90
                  ....*....|...
gi 221272233   87 NRRSTRINQSNLL 99
Cdd:pfam00420  81 THGTDDVDSLNLL 93
PRK07375 PRK07375
Na+/H+ antiporter subunit C;
7-47 2.94e-03

Na+/H+ antiporter subunit C;


Pssm-ID: 236004  Cd Length: 112  Bit Score: 34.09  E-value: 2.94e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|.
gi 221272233   7 LVLSAYLFSIGIYGLITSRNMVRALMCLELILNAVNMNLVT 47
Cdd:PRK07375   6 YALAIALLVIGLYGLIFKRNLLKKIIGLDVFQTGVNLFYIA 46
ND4L MTH00180
NADH dehydrogenase subunit 4L; Provisional
 1-99 5.95e-03

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 177231  Cd Length: 99  Bit Score: 33.08  E-value: 5.95e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221272233   1 MMLEHeLVLSAYLFSIGIYGLITSR-NMVRALMCLELILNAVNMNLVTFSDLFDSrqLKGDIFSIFVIAIAAAEAAIGPA 79
Cdd:MTH00180   1 MYYEY-LTVGIILFILGVLGIVLNRsNLIIMLMSIELMLLAISLLFLINSVAIDN--LIGQIFTIMILTVAAAESAIGLA 77

                         90       100
                 ....*....|....*....|
gi 221272233  80 IVSSIYRNRRSTRINQSNLL 99
Cdd:MTH00180  78 ILVAYYRIRGTIAVKSLNLL 97
PRK12658 PRK12658
Na+/H+ antiporter subunit C;
8-47 8.90e-03

Na+/H+ antiporter subunit C;


Pssm-ID: 183658  Cd Length: 125  Bit Score: 33.11  E-value: 8.90e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|
gi 221272233   8 VLSAYLFSIGIYgLITSRNMVRALMCLELILNAVNMNLVT 47
Cdd:PRK12658   7 ILVGVFFAAAIY-LMLSRHIIRILFGLALLGNAVNLLIFT 45
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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