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Conserved domains on  [gi|219522924|gb|ACL14763|]
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cytochrome b (mitochondrion) [Quintana atrizona]

Protein Classification

cytochrome b( domain architecture ID 1000003)

cytochrome b is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex) that is part of the mitochondrial respiratory chain; contributes to the generation of a proton gradient across the mitochondrial membrane that is then used for ATP synthesis

CATH:  1.20.810.10
Gene Symbol:  CYTB
Gene Ontology:  GO:0009055|GO:0046872|GO:0022904|GO:0005743|GO:0020037
PubMed:  2509716|8329437
SCOP:  4002208

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CYTB super family cl31802
cytochrome b; Provisional
 1-379 0e+00

cytochrome b; Provisional


The actual alignment was detected with superfamily member MTH00131:

Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 716.43  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219522924   1 MTNLRKSHPLLKIANNALVDLPAPINISAWWNFGSLLGLCLITQILTGLFLAMHYTSDITTAFSSVIHICRDVDYGWLIR 80
Cdd:MTH00131   1 MASLRKTHPLLKIANDALVDLPAPSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIR 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219522924  81 NMHANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVILLLLTMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGDSL 160
Cdd:MTH00131  81 NLHANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219522924 161 VQWIWGGFSVDNPTLTRFFAFHFLFPFIIAATTLMHLIFLHETGSNNPLGLSSNTDKISFHPYFSYKDLLGFILLLTILI 240
Cdd:MTH00131 161 VQWIWGGFSVDNATLTRFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLALT 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219522924 241 TLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLASILILMAVPLLHTSKQRSLTFRPL 320
Cdd:MTH00131 241 SLALFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPL 320

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 219522924 321 TQTLFWLLIADVVILTWIGGMPVEHPFIIIGQIASFLYFFLFLVLMPAAGWLENKVLGW 379
Cdd:MTH00131 321 TQFLFWTLVADVLILTWIGGMPVEHPFIIIGQVASVLYFSLFLVLMPLAGWLENKALEW 379
 
Name Accession Description Interval E-value
CYTB MTH00131
cytochrome b; Provisional
 1-379 0e+00

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 716.43  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219522924   1 MTNLRKSHPLLKIANNALVDLPAPINISAWWNFGSLLGLCLITQILTGLFLAMHYTSDITTAFSSVIHICRDVDYGWLIR 80
Cdd:MTH00131   1 MASLRKTHPLLKIANDALVDLPAPSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIR 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219522924  81 NMHANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVILLLLTMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGDSL 160
Cdd:MTH00131  81 NLHANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219522924 161 VQWIWGGFSVDNPTLTRFFAFHFLFPFIIAATTLMHLIFLHETGSNNPLGLSSNTDKISFHPYFSYKDLLGFILLLTILI 240
Cdd:MTH00131 161 VQWIWGGFSVDNATLTRFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLALT 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219522924 241 TLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLASILILMAVPLLHTSKQRSLTFRPL 320
Cdd:MTH00131 241 SLALFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPL 320

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 219522924 321 TQTLFWLLIADVVILTWIGGMPVEHPFIIIGQIASFLYFFLFLVLMPAAGWLENKVLGW 379
Cdd:MTH00131 321 TQFLFWTLVADVLILTWIGGMPVEHPFIIIGQVASVLYFSLFLVLMPLAGWLENKALEW 379
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
11-373 2.99e-112

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 332.91  E-value: 2.99e-112
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219522924  11 LKIANNALVDLPAPINISAWWNFGSLLGLCLITQILTGLFLAMHYTSDITTAFSSVIHICRDVDYGWLIRNMHANGASFF 90
Cdd:COG1290   20 LASLVREHLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLF 99

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219522924  91 FICIYLHIGRGLYYGSylYKE----TWNIGVILLLLTMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGDSLVQWIWG 166
Cdd:COG1290  100 FAAVYLHMFRGFFYGA--YKKprelNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFG 177

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219522924 167 GFSVDNPTLTRFFAF-HFLFPFIIAATTLMHLIFLHETGSNNPLG----LSSNTDKISFHPYFSYKDLLGFILLLTILIT 241
Cdd:COG1290  178 GEFPGDATLNRFFALhVLLLPALLLALVVLHLWLLHRHGHNNPPGperkKTEKVDGVPFHPYYTVKDGFGFFVFLGVFAL 257

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219522924 242 LALFSPNllGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIP--NKLGGVLALLASILILMAVPLLHTSKQRSLTFRP 319
Cdd:COG1290  258 LAFFFPI--NPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRP 335

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....
gi 219522924 320 LTQTLFWLLIADVVILTWIGGMPVehPFIIIGQIASFLYFFLFLVLMPAAGWLE 373
Cdd:COG1290  336 VRTALGVAFIVFFIVLTILGANPP--IATLLGSINTVTYFAFFLIVLPILAFIE 387
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 9-206 3.12e-91

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 272.32  E-value: 3.12e-91
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219522924   9 PLLKIANNALVDLPAPINISAWWNFGSLLGLCLITQILTGLFLAMHYTSDITTAFSSVIHICRDVDYGWLIRNMHANGAS 88
Cdd:cd00284    1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219522924  89 FFFICIYLHIGRGLYYGSY--LYKETWNIGVILLLLTMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGDSLVQWIWG 166
Cdd:cd00284   81 MFFLMLYLHIFRGLYYGSYkkPRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWG 160

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|
gi 219522924 167 GFSVDNPTLTRFFAFHFLFPFIIAATTLMHLIFLHETGSN 206
Cdd:cd00284  161 GFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
18-204 2.98e-82

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 249.22  E-value: 2.98e-82
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219522924   18 LVDLPAPINISAWWNFGSLLGLCLITQILTGLFLAMHYTSDITTAFSSVIHICRDVDYGWLIRNMHANGASFFFICIYLH 97
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219522924   98 IGRGLYYG--SYLYKETWNIGVILLLLTMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGDSLVQWIWGGFSVDNPTL 175
Cdd:pfam00033  81 IFRGLYYGgfSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160

                         170       180
                  ....*....|....*....|....*....
gi 219522924  176 TRFFAFHFLFPFIIAATTLMHLIFLHETG 204
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 258-339 2.28e-09

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 55.96  E-value: 2.28e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219522924  258 PANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLASILILMAVPLLHTSKQRSLTF-RPLTQTLFwlLIADVVILt 336
Cdd:TIGR01156  65 PANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIENVNKFQNPFrRPVATTVF--LFGTVVAL- 141


                  ...
gi 219522924  337 WIG 339
Cdd:TIGR01156 142 WLG 144
 
Name Accession Description Interval E-value
CYTB MTH00131
cytochrome b; Provisional
 1-379 0e+00

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 716.43  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219522924   1 MTNLRKSHPLLKIANNALVDLPAPINISAWWNFGSLLGLCLITQILTGLFLAMHYTSDITTAFSSVIHICRDVDYGWLIR 80
Cdd:MTH00131   1 MASLRKTHPLLKIANDALVDLPAPSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIR 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219522924  81 NMHANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVILLLLTMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGDSL 160
Cdd:MTH00131  81 NLHANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219522924 161 VQWIWGGFSVDNPTLTRFFAFHFLFPFIIAATTLMHLIFLHETGSNNPLGLSSNTDKISFHPYFSYKDLLGFILLLTILI 240
Cdd:MTH00131 161 VQWIWGGFSVDNATLTRFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLALT 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219522924 241 TLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLASILILMAVPLLHTSKQRSLTFRPL 320
Cdd:MTH00131 241 SLALFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPL 320

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 219522924 321 TQTLFWLLIADVVILTWIGGMPVEHPFIIIGQIASFLYFFLFLVLMPAAGWLENKVLGW 379
Cdd:MTH00131 321 TQFLFWTLVADVLILTWIGGMPVEHPFIIIGQVASVLYFSLFLVLMPLAGWLENKALEW 379
CYTB MTH00119
cytochrome b; Provisional
 1-379 0e+00

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 664.29  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219522924   1 MTNLRKSHPLLKIANNALVDLPAPINISAWWNFGSLLGLCLITQILTGLFLAMHYTSDITTAFSSVIHICRDVDYGWLIR 80
Cdd:MTH00119   2 APNLRKSHPLLKIINNSLIDLPTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIR 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219522924  81 NMHANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVILLLLTMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGDSL 160
Cdd:MTH00119  82 NLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTL 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219522924 161 VQWIWGGFSVDNPTLTRFFAFHFLFPFIIAATTLMHLIFLHETGSNNPLGLSSNTDKISFHPYFSYKDLLGFILLLTILI 240
Cdd:MTH00119 162 VEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLL 241

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219522924 241 TLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLASILILMAVPLLHTSKQRSLTFRPL 320
Cdd:MTH00119 242 TLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILILFLMPFLHTSKQRSMTFRPL 321

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 219522924 321 TQTLFWLLIADVVILTWIGGMPVEHPFIIIGQIASFLYFFLFLVLMPAAGWLENKVLGW 379
Cdd:MTH00119 322 SQLLFWTLVANLLILTWIGSQPVEHPFIIIGQLASILYFTILLILFPLLGALENKMLNY 380
CYTB MTH00074
cytochrome b; Provisional
 1-379 0e+00

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 640.58  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219522924   1 MTNLRKSHPLLKIANNALVDLPAPINISAWWNFGSLLGLCLITQILTGLFLAMHYTSDITTAFSSVIHICRDVDYGWLIR 80
Cdd:MTH00074   2 AHPIRKTHPLLKIINNSFIDLPTPSNLSSLWNFGSLLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMR 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219522924  81 NMHANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVILLLLTMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGDSL 160
Cdd:MTH00074  82 NIHANGASFFFICIYLHIGRGLYYGSYMYKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDTL 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219522924 161 VQWIWGGFSVDNPTLTRFFAFHFLFPFIIAATTLMHLIFLHETGSNNPLGLSSNTDKISFHPYFSYKDLLGFILLLTILI 240
Cdd:MTH00074 162 VQWIWGGFSVDKATLTRFFAFHFLLPFLIAGASIIHLLFLHETGSNNPTGLNSNPDKVPFHPYFSYKDLLGFLIMLTALA 241

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219522924 241 TLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLASILILMAVPLLHTSKQRSLTFRPL 320
Cdd:MTH00074 242 LLSLFSPNLLGDPDNFTPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVLALLASILILMLIPMLHTSKQRSLMFRPL 321

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 219522924 321 TQTLFWLLIADVVILTWIGGMPVEHPFIIIGQIASFLYFFLFLVLMPAAGWLENKVLGW 379
Cdd:MTH00074 322 TQILFWLLVANTLILTWIGGQPVEDPFIEIGQAASILYFLLFIIIIPLTGWLENKLLKW 380
CYTB MTH00100
cytochrome b; Provisional
 1-379 0e+00

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 638.61  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219522924   1 MTNLRKSHPLLKIANNALVDLPAPINISAWWNFGSLLGLCLITQILTGLFLAMHYTSDITTAFSSVIHICRDVDYGWLIR 80
Cdd:MTH00100   1 MTNIRKTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIR 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219522924  81 NMHANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVILLLLTMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGDSL 160
Cdd:MTH00100  81 YLHANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219522924 161 VQWIWGGFSVDNPTLTRFFAFHFLFPFIIAATTLMHLIFLHETGSNNPLGLSSNTDKISFHPYFSYKDLLGFILLLTILI 240
Cdd:MTH00100 161 VEWIWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLM 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219522924 241 TLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLASILILMAVPLLHTSKQRSLTFRPL 320
Cdd:MTH00100 241 LLVLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIIPLLHTSKQRSMMFRPL 320

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 219522924 321 TQTLFWLLIADVVILTWIGGMPVEHPFIIIGQIASFLYFFLFLVLMPAAGWLENKVLGW 379
Cdd:MTH00100 321 SQCLFWLLVADLLTLTWIGGQPVEHPFIIIGQLASILYFLIILILMPIASLIENNLLKW 379
CYTB MTH00191
cytochrome b; Provisional
 4-355 0e+00

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 611.15  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219522924   4 LRKSHPLLKIANNALVDLPAPINISAWWNFGSLLGLCLITQILTGLFLAMHYTSDITTAFSSVIHICRDVDYGWLIRNMH 83
Cdd:MTH00191   1 MRKTHPLLKIVNGSLIDLPSPSNISYWWNFGSLLGLCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIH 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219522924  84 ANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVILLLLTMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGDSLVQW 163
Cdd:MTH00191  81 ANGASFFFICIYLHIGRGLYYGSYLNKETWNVGVILLILSMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGDDLVQW 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219522924 164 IWGGFSVDNPTLTRFFAFHFLFPFIIAATTLMHLIFLHETGSNNPLGLSSNTDKISFHPYFSYKDLLGFILLLTILITLA 243
Cdd:MTH00191 161 LWGGFSVDNATLTRFFTFHFLLPFLIAALSLIHLLFLHETGSNNPLGLNSDSDKIPFHPYFSYKDILGFFILLFLLLFLV 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219522924 244 LFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLASILILMAVPLLHTSKQRSLTFRPLTQT 323
Cdd:MTH00191 241 LFSPNLLGDPENFIPANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVLALVMSILVLFLLPLLHTSKQRSNTFRPLTQV 320

                        330       340       350
                 ....*....|....*....|....*....|..
gi 219522924 324 LFWLLIADVVILTWIGGMPVEHPFIIIGQIAS 355
Cdd:MTH00191 321 VFWLWVANFILLTWLGGQPVEDPFILLGQISS 352
CYTB MTH00156
cytochrome b; Provisional
 11-353 0e+00

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 582.90  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219522924  11 LKIANNALVDLPAPINISAWWNFGSLLGLCLITQILTGLFLAMHYTSDITTAFSSVIHICRDVDYGWLIRNMHANGASFF 90
Cdd:MTH00156   1 LKIINNSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219522924  91 FICIYLHIGRGLYYGSYLYKETWNIGVILLLLTMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGDSLVQWIWGGFSV 170
Cdd:MTH00156  81 FICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSV 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219522924 171 DNPTLTRFFAFHFLFPFIIAATTLMHLIFLHETGSNNPLGLSSNTDKISFHPYFSYKDLLGFILLLTILITLALFSPNLL 250
Cdd:MTH00156 161 DNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219522924 251 GDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLASILILMAVPLLHTSKQRSLTFRPLTQTLFWLLIA 330
Cdd:MTH00156 241 GDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSKFRGNQFYPINKILFWIFVN 320

                        330       340
                 ....*....|....*....|...
gi 219522924 331 DVVILTWIGGMPVEHPFIIIGQI 353
Cdd:MTH00156 321 IVILLTWIGARPVEEPYILTGQI 343
CYTB MTH00034
cytochrome b; Validated
 4-377 0e+00

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 570.49  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219522924   4 LRKSHPLLKIANNALVDLPAPINISAWWNFGSLLGLCLITQILTGLFLAMHYTSDITTAFSSVIHICRDVDYGWLIRNMH 83
Cdd:MTH00034   4 LRKSHPLFKILNSSLIDLPSPSNLSIWWNFGSLLGLCLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIH 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219522924  84 ANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVILLLLTMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGDSLVQW 163
Cdd:MTH00034  84 ANGASLFFICLYFHIGRGLYYGSYVNIETWNIGVILFLLTMLTAFVGYVLPWGQMSFWAATVITNLVSAVPYIGTDIVQW 163

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219522924 164 IWGGFSVDNPTLTRFFAFHFLFPFIIAATTLMHLIFLHETGSNNPLGLSSNTDKISFHPYFSYKDLLGFILLLTILITLA 243
Cdd:MTH00034 164 IWGGFSVDNATLTRFFAFHFLFPFIIAALSIIHLLFLHQTGSNNPTGLNSNYDKVPFHTYFTTKDLVGFLILFAALSSLA 243

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219522924 244 LFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLASILILMAVPLLHTSKQRSLTFRPLTQT 323
Cdd:MTH00034 244 LLFPTALNDPENFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVAAILVLFLVPILHTSNNQSSTFRPLSQI 323

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....
gi 219522924 324 LFWLLIADVVILTWIGGMPVEHPFIIIGQIASFLYFFLFLVLMPAAGWLENKVL 377
Cdd:MTH00034 324 AFWLLIATFFILTWIGSQPVEYPFILLGQVASVLYFSLFLFFFPLISYLENKLI 377
CYTB MTH00145
cytochrome b; Provisional
 1-355 0e+00

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 556.83  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219522924   1 MTNLRKSHPLLKIANNALVDLPAPINISAWWNFGSLLGLCLITQILTGLFLAMHYTSDITTAFSSVIHICRDVDYGWLIR 80
Cdd:MTH00145   2 LSPLRKSHPVLKVVNGSLYDLPAPVNLSIWWNFGSLLGLCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLLR 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219522924  81 NMHANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVILLLLTMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGDSL 160
Cdd:MTH00145  82 SLHANGASFFFICIYLHIGRGLYYGSYLMQHTWNIGVTLLLLSMGTAFLGYVLPWGQMSFWGATVITNLLSAIPYVGKML 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219522924 161 VQWIWGGFSVDNPTLTRFFAFHFLFPFIIAATTLMHLIFLHETGSNNPLGLSSNTDKISFHPYFSYKDLLGFILLLTILI 240
Cdd:MTH00145 162 VEWVWGGFSVGNATLKRFFSLHFLLPFVILGLSVLHLLFLHETGSNNPLGLDSDGDKVPFHPYYTIKDLVGFVVLLFLLV 241

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219522924 241 TLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLASILILMAVPLLHTSKQRSLTFRPL 320
Cdd:MTH00145 242 FLVLFFPNLLGDPENFIPANPMVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIVILFFLPLLHVGKFRSLSFYPL 321

                        330       340       350
                 ....*....|....*....|....*....|....*
gi 219522924 321 TQTLFWLLIADVVILTWIGGMPVEHPFIIIGQIAS 355
Cdd:MTH00145 322 NQVLFWIFVGNFFILTWIGACPVEEPYETIGQVFT 356
CYTB MTH00016
cytochrome b; Validated
 4-353 0e+00

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 537.72  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219522924   4 LRKSHPLLKIANNALVDLPAPINISAWWNFGSLLGLCLITQILTGLFLAMHYTSDITTAFSSVIHICRDVDYGWLIRNMH 83
Cdd:MTH00016   5 MRKTHPLIKIMNGSLVDLPAPSNLSIWWNFGSLLGLCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLLRNLH 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219522924  84 ANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVILLLLTMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGDSLVQW 163
Cdd:MTH00016  85 ANGASFFFICLYLHIGRGIYYGSYFLMETWNIGVILLLLTMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGKMLVQW 164

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219522924 164 IWGGFSVDNPTLTRFFAFHFLFPFIIAATTLMHLIFLHETGSNNPLGLSSNTDKISFHPYFSYKDLLGFILLLTILITLA 243
Cdd:MTH00016 165 LWGGFSVDNATLTRFFALHFLLPFVIAALSMIHLLFLHQTGSNNPLGVNSNSDKVPFHPYYTSKDIVGFIVMLFLLLSVV 244

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219522924 244 LFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLASILILMAVPLLHTSKQRSLTFRPLTQT 323
Cdd:MTH00016 245 LLWPNILGDPENFIPANPLVTPTHIKPEWYFLWAYAILRSIPNKLGGVVAMFASILILFFLPFIFKQKFRGLSFYPLNQI 324

                        330       340       350
                 ....*....|....*....|....*....|
gi 219522924 324 LFWLLIADVVILTWIGGMPVEHPFIIIGQI 353
Cdd:MTH00016 325 LFWLLVSNFLLLTWIGGRPVEPPYEFLGQI 354
CYTB MTH00022
cytochrome b; Validated
 4-377 7.37e-175

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 491.52  E-value: 7.37e-175
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219522924   4 LRKSHPLLKIANNALVDLPAPINISAWWNFGSLLGLCLITQILTGLFLAMHYTSDITTAFSSVIHICRDVDYGWLIRNMH 83
Cdd:MTH00022   3 LRKENPLLSIVNGFLVDLPSPSNISYLWNFGSLLGLCLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYLH 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219522924  84 ANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVILLLLTMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGDSLVQW 163
Cdd:MTH00022  83 ANGASLFFLCLYIHIGRGLYYGGYLKFHVWNVGVVIFLLTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTDIVQW 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219522924 164 IWGGFSVDNPTLTRFFAFHFLFPFIIAATTLMHLIFLHETGSNNPLGLSSNTDKISFHPYFSYKDLLGFILLLTILITLA 243
Cdd:MTH00022 163 VWGGFSVSNATLNRFFSLHFLFPFILAFLVIVHLIYLHVDGSNNPIGLNSSVDKVSFHVYYTSKDWYGIVVLFFLLSFIV 242

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219522924 244 LFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLASILILMAVPLLHTSKQRSLTFRPLTQT 323
Cdd:MTH00022 243 YFAPNLLGDPENFIQANSLVTPVHIQPEWYFLFAYAILRSIPNKLGGVVAMFFSILILFFLPLLHTSWLRGLTFRPLGRM 322

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....
gi 219522924 324 LFWLLIADVVILTWIGGMPVEHPFIIIGQIASFLYFFLFLVLMPAAGWLENKVL 377
Cdd:MTH00022 323 AFWFLIVDFILLTWIGSQVVEEPFILIGQLLSFFYFFYFLVLIPLLGELENQLL 376
CYTB MTH00053
cytochrome b; Provisional
 4-378 2.14e-169

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 478.05  E-value: 2.14e-169
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219522924   4 LRKSHPLLKIANNALVDLPAPINISAWWNFGSLLGLCLITQILTGLFLAMHYTSDITTAFSSVIHICRDVDYGWLIRNMH 83
Cdd:MTH00053   5 IRKENPVISLVNSMFIDLPSPSNISYLWNFGSLLGFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFILRYLH 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219522924  84 ANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVILLLLTMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGDSLVQW 163
Cdd:MTH00053  85 ANGASMFFLCVYFHIGRGIYYGSYTKIIVWNVGVLIFLLMILTAFIGYVLPWGQMSFWAATVITNLLSAIPYVGDDIVRW 164

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219522924 164 IWGGFSVDNPTLTRFFAFHFLFPFIIAATTLMHLIFLHETGSNNPLGLSSNTDKISFHPYFSYKDLLGFILLLTILITLA 243
Cdd:MTH00053 165 VWGGFSVSNATLNRFYSLHYLLPFILAGLALVHLIALHEDGSNNPIGVRSDIDKIPFHYYYVLKDLYGAVILLIILSIIV 244

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219522924 244 LFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLASILILMAVPLLHTSKQRSLTFRPLTQT 323
Cdd:MTH00053 245 FLFPYSLGDAENFKQANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVVALVFSILVLFFLPYLHKSRFRGLSFRPLSKI 324

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 219522924 324 LFWLLIADVVILTWIGGMPVEHPFIIIGQIASFLYFFLFLVLMPAAGWLENKVLG 378
Cdd:MTH00053 325 LFWFLVGDFFLLTWIGGQPVEEPYILIGQIASIFYFAYFLILMPLAGYLENKLLK 379
CYTB MTH00224
cytochrome b; Provisional
 4-353 9.92e-165

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 465.94  E-value: 9.92e-165
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219522924   4 LRKSHPLLKIANNALVDLPAPINISAWWNFGSLLGLCLITQILTGLFLAMHYTSDITTAFSSVIHICRDVDYGWLIRNMH 83
Cdd:MTH00224   5 FRTTHPAIKILNGSLIDLPAPNNISIWWNYGSLLGLCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLLRSIH 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219522924  84 ANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVILLLLTMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGDSLVQW 163
Cdd:MTH00224  85 ANGASMFFLFIYLHVGRGLYYGSFNLSETWNIGVILFILTMATAFLGYVLPWGQMSFWGATVITNLFSAIPYIGKDLVEW 164

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219522924 164 IWGGFSVDNPTLTRFFAFHFLFPFIIAATTLMHLIFLHETGSNNPLGLSSNTDKISFHPYFSYKDLLGFILLLTILITLA 243
Cdd:MTH00224 165 IWGGFAVDNATLNRFFSFHFLLPFAIMGATILHIMFLHQTGSNNPIGINADSARIPFHPYYSIKDALGYLIAILLLSLMV 244

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219522924 244 LFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLASILILMAVPLLHTSKQRSLTFRPLTQT 323
Cdd:MTH00224 245 LFEPNLFTDPENFLMANPLVTPIHIKPEWYFLWMYAILRSIPNKLGGVVALFAAILILFILPLTSVMNKRSLPFYPLNQL 324

                        330       340       350
                 ....*....|....*....|....*....|
gi 219522924 324 LFWLLIADVVILTWIGGMPVEHPFIIIGQI 353
Cdd:MTH00224 325 LFWLLVTSWAILTWIGGRPVEDPFEGIGQV 354
CYTB MTH00033
cytochrome b; Provisional
 16-374 7.77e-124

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 362.33  E-value: 7.77e-124
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219522924  16 NALVDLPAPINISAWWNFGSLLGLCLITQILTGLFLAMHYTSDITTAFSSVIHICRDVDYGWLIRNMHANGASFFFICIY 95
Cdd:MTH00033  13 NDIIDLPTPSNISYWWNFGSLLCLCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASLFFICVY 92

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219522924  96 LHIGRGLYYGSYLYKETWNIGVILLLLTMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGDSLVQWIWGGFSVDNPTL 175
Cdd:MTH00033  93 CHIGRGLYYGGYSRVLTWIVGVLIFFIMMLTAFIGYVLPWGQMSFWAATVITNLVSAIPSVGGSIVEWIWGGFSVSNCTL 172

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219522924 176 TRFFAFHFLFPFIIAATTLMHLIFLHETGSNNPLGLSSNTDKISFHPYFSYKDLLGFILLLTILITLALFS--PNLLGDP 253
Cdd:MTH00033 173 NRFFSLHYLLPFVLVGLVLAHLLTLHEKGSNEPLGLVGLSDRTAFHVYFTIKDILGFLILFGVFVIIGIEPriETLLQDP 252

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219522924 254 ENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLASILILMAVPLLHTSKQRSLTFRPLTQTLFWLLIADVV 333
Cdd:MTH00033 253 ENFIQANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVLALFASILVLLLMPILDRSKIRSLTFNPTGKFFFWFIVGDFI 332

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|..
gi 219522924 334 ILTWIGGMPV-EHPFIIIGQIASFLYFFLFLVLMPAAGWLEN 374
Cdd:MTH00033 333 ILTWIGSAPAgADPYVLIGRIATIFYFGYFLVLVPLLGYLSN 374
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
11-373 2.99e-112

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 332.91  E-value: 2.99e-112
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219522924  11 LKIANNALVDLPAPINISAWWNFGSLLGLCLITQILTGLFLAMHYTSDITTAFSSVIHICRDVDYGWLIRNMHANGASFF 90
Cdd:COG1290   20 LASLVREHLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLF 99

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219522924  91 FICIYLHIGRGLYYGSylYKE----TWNIGVILLLLTMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGDSLVQWIWG 166
Cdd:COG1290  100 FAAVYLHMFRGFFYGA--YKKprelNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFG 177

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219522924 167 GFSVDNPTLTRFFAF-HFLFPFIIAATTLMHLIFLHETGSNNPLG----LSSNTDKISFHPYFSYKDLLGFILLLTILIT 241
Cdd:COG1290  178 GEFPGDATLNRFFALhVLLLPALLLALVVLHLWLLHRHGHNNPPGperkKTEKVDGVPFHPYYTVKDGFGFFVFLGVFAL 257

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219522924 242 LALFSPNllGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIP--NKLGGVLALLASILILMAVPLLHTSKQRSLTFRP 319
Cdd:COG1290  258 LAFFFPI--NPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRP 335

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....
gi 219522924 320 LTQTLFWLLIADVVILTWIGGMPVehPFIIIGQIASFLYFFLFLVLMPAAGWLE 373
Cdd:COG1290  336 VRTALGVAFIVFFIVLTILGANPP--IATLLGSINTVTYFAFFLIVLPILAFIE 387
CYTB MTH00086
cytochrome b; Provisional
 15-355 4.91e-112

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 331.13  E-value: 4.91e-112
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219522924  15 NNALVDLPAPINISAWWNFGSLLGLCLITQILTGLFLAMHYTSDITTAFSSVIHICRDVDYGWLIRNMHANGASFFFICI 94
Cdd:MTH00086   4 NSLVVTLPSSKSLSYWWNFGSMLGMVLVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFFIFL 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219522924  95 YLHIGRGLYYGSYLYKETWNIGVILLLLTMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGDSLVQWIWGGFSVDNPT 174
Cdd:MTH00086  84 YLHIFKGLFMMSYRLKKVWISGLTIYLLVMMEAFMGYVLVWAQMSFWAAVVITSLLSVIPIWGPSIVMWIWGGFGVSSAT 163

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219522924 175 LTRFFAFHFLFPFIIAATTLMHLIFLHETGSNNPLGLSSNTDKISFHPYFSYKDlLGFILLLTILITLALFSPNLLGDPE 254
Cdd:MTH00086 164 LKFFFVLHFLLPWGLLVLVLFHLIFLHSTGSTSSLYCHGDYDKICFGPEYWNKD-AYNIIFWLVFIIFSLFYPFNLGDPE 242

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219522924 255 NFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLASILILMAVPLLHTSKQrslTFRPLTQTLFWLLIADVVI 334
Cdd:MTH00086 243 MFIEADPMMSPVHIVPEWYFLFAYAILRAIPNKVLGVIALLMSIVVFYFFIFVNNYTS---CLNKLNKFLVFSFIVVNVI 319

                        330       340
                 ....*....|....*....|.
gi 219522924 335 LTWIGGMPVEHPFIIIGQIAS 355
Cdd:MTH00086 320 LSWLGQCLVEYPFLFLSQIFS 340
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 9-206 3.12e-91

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 272.32  E-value: 3.12e-91
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219522924   9 PLLKIANNALVDLPAPINISAWWNFGSLLGLCLITQILTGLFLAMHYTSDITTAFSSVIHICRDVDYGWLIRNMHANGAS 88
Cdd:cd00284    1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219522924  89 FFFICIYLHIGRGLYYGSY--LYKETWNIGVILLLLTMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGDSLVQWIWG 166
Cdd:cd00284   81 MFFLMLYLHIFRGLYYGSYkkPRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWG 160

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|
gi 219522924 167 GFSVDNPTLTRFFAFHFLFPFIIAATTLMHLIFLHETGSN 206
Cdd:cd00284  161 GFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
CYTB MTH00046
cytochrome b; Validated
 10-355 1.59e-85

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 263.38  E-value: 1.59e-85
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219522924  10 LLKIANNALVDLPAPINISAWWNFGSLLGLCLITQILTGLFLAMHYTSDITTAFSSVIHICRDVDYGWLIRNMHANGASF 89
Cdd:MTH00046   1 MISLIRRNLIDLPTNYSLNYYWCSGFVLSVFMVIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNV 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219522924  90 FFICIYLHIGRGLYYGSYLYKETWNIGVILLLLTMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGDSLVQWIWGGFS 169
Cdd:MTH00046  81 LFILLFIHMGRALYYSSYSKKGVWNVGFILYLLVMVEAFLGYILPWHQMSYWAATVLTSIVDSVPIVGSLVYKYIVGGFS 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219522924 170 VDNPTLTRFFAFHFLFPFIIAATTLMHLIFLHETGSNNPLGLSSN-TDKISFHPYFSYKDLLGFILLLTILITLALFSPN 248
Cdd:MTH00046 161 VTGVTLVRVFSVHICLGFVILGLMVVHLFYLHKSGSSNPLFSSNGySDVVYFHSYFTVKDLFLFMVVCSLLVFWLFVSPD 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219522924 249 LLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVlALLASILILMAVPllhtSKQRSLTFRPLTQTLFWLL 328
Cdd:MTH00046 241 LVLDIEAYLEADPLVTPVSIKPEWYFLAFYAMLRSINSKIGGL-VLVLSFLFFLWVP----TFNGSSVYSVWRQVNFWLI 315

                        330       340
                 ....*....|....*....|....*..
gi 219522924 329 IADVVILTWIGGMPVEHPFIIIGQIAS 355
Cdd:MTH00046 316 VSLFFSLSYLGGCHPEYPYLLISQLFS 342
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
18-204 2.98e-82

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 249.22  E-value: 2.98e-82
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219522924   18 LVDLPAPINISAWWNFGSLLGLCLITQILTGLFLAMHYTSDITTAFSSVIHICRDVDYGWLIRNMHANGASFFFICIYLH 97
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219522924   98 IGRGLYYG--SYLYKETWNIGVILLLLTMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGDSLVQWIWGGFSVDNPTL 175
Cdd:pfam00033  81 IFRGLYYGgfSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160

                         170       180
                  ....*....|....*....|....*....
gi 219522924  176 TRFFAFHFLFPFIIAATTLMHLIFLHETG 204
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 207-354 4.26e-49

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 162.43  E-value: 4.26e-49
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219522924 207 NPLGLSSNTDKISFHPYFSYKDLLGFILLLTILITLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPN 286
Cdd:cd00290    1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 219522924 287 KLGGVLALLASILILMAVPLLHTSKQRSlTFRPLTQTLFWLLIADVVILTWIGGMPVEHPFIIIGQIA 354
Cdd:cd00290   81 KLLGVLAMAASILSLFLVPFLENSNKRS-QFRPLRPTAFWVFLAGTLVLGWLGIQPVEYPFSLILQLF 147
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
258-355 3.43e-41

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 140.31  E-value: 3.43e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219522924  258 PANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLASILILMAVPLLHTSKQRSLTFRPLTQTLFWLLIADVVILTW 337
Cdd:pfam00032   1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLFKIFFWLFVVDFVVLGW 80

                          90
                  ....*....|....*...
gi 219522924  338 IGGMPVEHPFIIIGQIAS 355
Cdd:pfam00032  81 LGKQPPTGPYTLLGQIAT 98
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
88-253 4.27e-38

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 134.68  E-value: 4.27e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219522924   88 SFFFICIYLHIGRGLYYGSYLYKE--TWNIGVILLLLTMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGDSLVQWIW 165
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWLLF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219522924  166 GGFSVDNPTLTRFFAF-HFLFPFIIAATTLMHLIFLHETGSNNPLGLSSNTDKISFHPYFSYKDLLGFILLLTILITLAL 244
Cdd:pfam13631  81 GGPFPGTATIPRFYALhILLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKMLLFFLITVALLIGLAQ 160


                  ....*....
gi 219522924  245 FSPNLLGDP 253
Cdd:pfam13631 161 INPIWLGGP 169
PRK03735 PRK03735
cytochrome b6; Provisional
 33-209 1.20e-33

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 124.44  E-value: 1.20e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219522924  33 FGSLLGLCLITQILTGLFLAMHYTSDITTAFSSVIHICRDVDYGWLIRNMHANGASFFFICIYLHIGRGLYYGSYLYKE- 111
Cdd:PRK03735  44 FGGLTFFCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKPRe 123

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219522924 112 -TWNIGVILLLLTMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGDSLVQWIWGGFSVDNPTLTRFFAFHFLFP-FII 189
Cdd:PRK03735 124 lNWVVGVLIFFVTVGLGFTGYLLPWDQKAYFATKVGSQIAEAIPVIGDFIKTLLRGGEIVGAQTLTRFFAIHVFFLpWAL 203

                        170       180
                 ....*....|....*....|
gi 219522924 190 AATTLMHLIFLHETGSNNPL 209
Cdd:PRK03735 204 AVLMLAHFLMIRKQGISGPL 223
petB CHL00070
cytochrome b6
 21-209 1.08e-27

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 108.27  E-value: 1.08e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219522924  21 LPAPINIsaWWNFGSLLGLCLITQILTGLFLAMHYTSDITTAFSSVIHICRDVDYGWLIRNMHANGASFFFICIYLHIGR 100
Cdd:CHL00070  26 VPPHVNI--FYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFR 103

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219522924 101 GLYYGSYLYKE--TWNIGVILLLLTMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGDSLVQWIWGGFSVDNPTLTRF 178
Cdd:CHL00070 104 VYLTGGFKKPRelTWVTGVVLAVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSVSVGQSTLTRF 183

                        170       180       190
                 ....*....|....*....|....*....|..
gi 219522924 179 FAFHFLFPFIIAAT-TLMHLIFLHETGSNNPL 209
Cdd:CHL00070 184 YSLHTFVLPLLTAVfMLMHFLMIRKQGISGPL 215
PetD COG5679
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion]; ...
 258-347 1.53e-09

Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion];


Pssm-ID: 444393 [Multi-domain]  Cd Length: 161  Bit Score: 56.34  E-value: 1.53e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219522924 258 PANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLASILILMAVPLLHTSKQRSLTF-RPLTQTLFwlLIADVVILt 336
Cdd:COG5679   66 PADPFATPLEILPEWYLYPVFQILRVVPNKLLGIVMMAAIPLGLMLVPFIENVNKFQNPFrRPVATAVF--LFGTLVTL- 142

                         90
                 ....*....|....
gi 219522924 337 WIG---GMPVEHPF 347
Cdd:COG5679  143 WLGigaALPIDKSL 156
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 258-339 2.28e-09

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 55.96  E-value: 2.28e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219522924  258 PANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLASILILMAVPLLHTSKQRSLTF-RPLTQTLFwlLIADVVILt 336
Cdd:TIGR01156  65 PANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIENVNKFQNPFrRPVATTVF--LFGTVVAL- 141


                  ...
gi 219522924  337 WIG 339
Cdd:TIGR01156 142 WLG 144
petD CHL00058
cytochrome b6/f complex subunit IV
 258-339 5.36e-09

cytochrome b6/f complex subunit IV


Pssm-ID: 176998  Cd Length: 160  Bit Score: 54.62  E-value: 5.36e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219522924 258 PANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLASILILMAVPLLHTSKQRSLTF-RPLTQTLFwlLIADVVILt 336
Cdd:CHL00058  65 PADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMASVPAGLLTVPFLENVNKFQNPFrRPVATTVF--LIGTAVAL- 141


                 ...
gi 219522924 337 WIG 339
Cdd:CHL00058 142 WLG 144
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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