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Conserved domains on  [gi|219520392|gb|AAI43892|]
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C1orf175 protein [Homo sapiens]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
KLF17_N super family cl41211
N-terminal domain of Kruppel-like factor 17; Kruppel-like factor 17 (KLF17), or Krueppel-like ...
5-135 1.21e-03

N-terminal domain of Kruppel-like factor 17; Kruppel-like factor 17 (KLF17), or Krueppel-like factor 17, is a protein that, in humans, is encoded by the KLF17 gene and acts as a tumor suppressor. It negatively regulates epithelial-mesenchymal transition and metastasis in breast cancer. KLF17 is thought to be the human ortholog of the mouse gene, zinc finger protein 393 (Zfp393), although it has diverged significantly. KLF17 can regulate gene transcription from CACCC-box elements. It belongs to a family of proteins, called the Specificity Protein (SP)/KLF family, characterized by a C-terminal DNA-binding domain of 81 amino acids consisting of three Kruppel-like C2H2 zinc fingers. These factors bind to a loose consensus motif, namely NNRCRCCYY (where N is any nucleotide; R is A/G, and Y is C/T), such as the recurring motifs in GC and GT boxes (5'-GGGGCGGGG-3' and 5-GGTGTGGGG-3') that are present in promoters and more distal regulatory elements of mammalian genes. Members of the KLF family can act as activators or repressors of transcription depending on cell and promoter context. KLFs regulate various cellular functions, such as proliferation, differentiation and apoptosis, as well as the development and homeostasis of several types of tissue. In addition to the C-terminal DNA-binding domain, each KLF also has a unique N-terminal activation/repression domain that confers specificity and allows it to bind specifically to a certain partner, leading to distinct activities in vivo. This model represents the N-terminal domain of KLF17.


The actual alignment was detected with superfamily member cd21574:

Pssm-ID: 410567  Cd Length: 286  Bit Score: 41.99  E-value: 1.21e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219520392    5 PGANLVFHEDPKMTPSPPSCGAPglgSGTIPQPHpdmAQVPMlnlLPSPGLALVPDLNDSLSPV--------SGEASGLV 76
Cdd:cd21574   134 PGVAMTFSGNLRMPPSGLPVSAS---SGIPMMSH---IRAPT---MPYSGPPTVPSNRDSLTPKmllaptmpSTEAQAVL 204
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 219520392   77 SENT---PRPDdsraiaPASLQITSSCSGEALDLDSKD--VSRPDSQGRLCPASNPILSPSSTE 135
Cdd:cd21574   205 PSLAqmlPPRD------PHNLGMPPAGSPSLLALESQDslVSQPASQEDPFLPEQPIPAPQRAE 262
 
Name Accession Description Interval E-value
KLF17_N cd21574
N-terminal domain of Kruppel-like factor 17; Kruppel-like factor 17 (KLF17), or Krueppel-like ...
5-135 1.21e-03

N-terminal domain of Kruppel-like factor 17; Kruppel-like factor 17 (KLF17), or Krueppel-like factor 17, is a protein that, in humans, is encoded by the KLF17 gene and acts as a tumor suppressor. It negatively regulates epithelial-mesenchymal transition and metastasis in breast cancer. KLF17 is thought to be the human ortholog of the mouse gene, zinc finger protein 393 (Zfp393), although it has diverged significantly. KLF17 can regulate gene transcription from CACCC-box elements. It belongs to a family of proteins, called the Specificity Protein (SP)/KLF family, characterized by a C-terminal DNA-binding domain of 81 amino acids consisting of three Kruppel-like C2H2 zinc fingers. These factors bind to a loose consensus motif, namely NNRCRCCYY (where N is any nucleotide; R is A/G, and Y is C/T), such as the recurring motifs in GC and GT boxes (5'-GGGGCGGGG-3' and 5-GGTGTGGGG-3') that are present in promoters and more distal regulatory elements of mammalian genes. Members of the KLF family can act as activators or repressors of transcription depending on cell and promoter context. KLFs regulate various cellular functions, such as proliferation, differentiation and apoptosis, as well as the development and homeostasis of several types of tissue. In addition to the C-terminal DNA-binding domain, each KLF also has a unique N-terminal activation/repression domain that confers specificity and allows it to bind specifically to a certain partner, leading to distinct activities in vivo. This model represents the N-terminal domain of KLF17.


Pssm-ID: 410567  Cd Length: 286  Bit Score: 41.99  E-value: 1.21e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219520392    5 PGANLVFHEDPKMTPSPPSCGAPglgSGTIPQPHpdmAQVPMlnlLPSPGLALVPDLNDSLSPV--------SGEASGLV 76
Cdd:cd21574   134 PGVAMTFSGNLRMPPSGLPVSAS---SGIPMMSH---IRAPT---MPYSGPPTVPSNRDSLTPKmllaptmpSTEAQAVL 204
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 219520392   77 SENT---PRPDdsraiaPASLQITSSCSGEALDLDSKD--VSRPDSQGRLCPASNPILSPSSTE 135
Cdd:cd21574   205 PSLAqmlPPRD------PHNLGMPPAGSPSLLALESQDslVSQPASQEDPFLPEQPIPAPQRAE 262
 
Name Accession Description Interval E-value
KLF17_N cd21574
N-terminal domain of Kruppel-like factor 17; Kruppel-like factor 17 (KLF17), or Krueppel-like ...
5-135 1.21e-03

N-terminal domain of Kruppel-like factor 17; Kruppel-like factor 17 (KLF17), or Krueppel-like factor 17, is a protein that, in humans, is encoded by the KLF17 gene and acts as a tumor suppressor. It negatively regulates epithelial-mesenchymal transition and metastasis in breast cancer. KLF17 is thought to be the human ortholog of the mouse gene, zinc finger protein 393 (Zfp393), although it has diverged significantly. KLF17 can regulate gene transcription from CACCC-box elements. It belongs to a family of proteins, called the Specificity Protein (SP)/KLF family, characterized by a C-terminal DNA-binding domain of 81 amino acids consisting of three Kruppel-like C2H2 zinc fingers. These factors bind to a loose consensus motif, namely NNRCRCCYY (where N is any nucleotide; R is A/G, and Y is C/T), such as the recurring motifs in GC and GT boxes (5'-GGGGCGGGG-3' and 5-GGTGTGGGG-3') that are present in promoters and more distal regulatory elements of mammalian genes. Members of the KLF family can act as activators or repressors of transcription depending on cell and promoter context. KLFs regulate various cellular functions, such as proliferation, differentiation and apoptosis, as well as the development and homeostasis of several types of tissue. In addition to the C-terminal DNA-binding domain, each KLF also has a unique N-terminal activation/repression domain that confers specificity and allows it to bind specifically to a certain partner, leading to distinct activities in vivo. This model represents the N-terminal domain of KLF17.


Pssm-ID: 410567  Cd Length: 286  Bit Score: 41.99  E-value: 1.21e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219520392    5 PGANLVFHEDPKMTPSPPSCGAPglgSGTIPQPHpdmAQVPMlnlLPSPGLALVPDLNDSLSPV--------SGEASGLV 76
Cdd:cd21574   134 PGVAMTFSGNLRMPPSGLPVSAS---SGIPMMSH---IRAPT---MPYSGPPTVPSNRDSLTPKmllaptmpSTEAQAVL 204
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 219520392   77 SENT---PRPDdsraiaPASLQITSSCSGEALDLDSKD--VSRPDSQGRLCPASNPILSPSSTE 135
Cdd:cd21574   205 PSLAqmlPPRD------PHNLGMPPAGSPSLLALESQDslVSQPASQEDPFLPEQPIPAPQRAE 262
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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