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Conserved domains on  [gi|219124057|ref|XP_002182329|]
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protein fucoxanthin chlorophyll a/c protein [Phaeodactylum tricornutum CCAP 1055/1]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PLN00089 PLN00089
fucoxanthin-chlorophyll a/c binding protein; Provisional
 1-206 5.87e-129

fucoxanthin-chlorophyll a/c binding protein; Provisional


:

Pssm-ID: 177710 [Multi-domain]  Cd Length: 209  Bit Score: 361.31  E-value: 5.87e-129
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219124057   1 MKSIIFASLLTSAAAFAPASSSTTRTATPTALNEEFCRGYVGGESVEPMFIGKTGSKNFDPLGLTEKVPEWVPWFRESEL 80
Cdd:PLN00089   1 MKFAIFAALCASAAAAAPAQKSRTRPATPTAAAEDDCPGAIGFAAKEFMFIGKTGSKKFDPLGLAEKVEEFLPWFRESEL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219124057  81 KHGRAAMLAVAGFVVPEFVRVPGEAYSFAAIPNVIDAHDALPQ--AMIQIFAWISFVE-AVSFPALANMNEFDRVPGDFG 157
Cdd:PLN00089  81 KHGRAAMLAVAGFIAPDFVRIPGEAYSFAAIPKTIDAHDALLKsgAMIQIFAWIGFVDlAVSAPAAAAAAEFDRTPGDFG 160

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*....
gi 219124057 158 FDPLKLYPKDAAKQEQMQLKELKNGRLAMVAIGGMVTGSAITGHGFPYL 206
Cdd:PLN00089 161 FDLLALYPKDAAKMEKKKDKELKNGRLAMVAIGGIATGSAITGHGFPYI 209
 
Name Accession Description Interval E-value
PLN00089 PLN00089
fucoxanthin-chlorophyll a/c binding protein; Provisional
 1-206 5.87e-129

fucoxanthin-chlorophyll a/c binding protein; Provisional


Pssm-ID: 177710 [Multi-domain]  Cd Length: 209  Bit Score: 361.31  E-value: 5.87e-129
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219124057   1 MKSIIFASLLTSAAAFAPASSSTTRTATPTALNEEFCRGYVGGESVEPMFIGKTGSKNFDPLGLTEKVPEWVPWFRESEL 80
Cdd:PLN00089   1 MKFAIFAALCASAAAAAPAQKSRTRPATPTAAAEDDCPGAIGFAAKEFMFIGKTGSKKFDPLGLAEKVEEFLPWFRESEL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219124057  81 KHGRAAMLAVAGFVVPEFVRVPGEAYSFAAIPNVIDAHDALPQ--AMIQIFAWISFVE-AVSFPALANMNEFDRVPGDFG 157
Cdd:PLN00089  81 KHGRAAMLAVAGFIAPDFVRIPGEAYSFAAIPKTIDAHDALLKsgAMIQIFAWIGFVDlAVSAPAAAAAAEFDRTPGDFG 160

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*....
gi 219124057 158 FDPLKLYPKDAAKQEQMQLKELKNGRLAMVAIGGMVTGSAITGHGFPYL 206
Cdd:PLN00089 161 FDLLALYPKDAAKMEKKKDKELKNGRLAMVAIGGIATGSAITGHGFPYI 209
Chloroa_b-bind pfam00504
Chlorophyll A-B binding protein;
59-193 2.14e-43

Chlorophyll A-B binding protein;


Pssm-ID: 459836 [Multi-domain]  Cd Length: 159  Bit Score: 142.83  E-value: 2.14e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219124057   59 FDPLGLTEKvPEWVPWFRESELKHGRAAMLAVAGFVVPEFVRVPG--EAYSFAAIPNVIDAHDALPQAM-IQIFAWISFV 135
Cdd:pfam00504  15 FDPLGLSAD-PETFKRYREAELKHGRWAMLAVLGALVPEALGKLGggNEPVWFEAGAVALHAQSVPTLLaLQILLLMGFL 93

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 219124057  136 EAVSFPALANMNEFD----RVPGDFGFDPLKLYPKDAAKQEQMQLKELKNGRLAMVAIGGMV 193
Cdd:pfam00504  94 ELARWQGGKAPGLGGggdrGYPGGFGFDPLGLAKKDPETLAELKLKELKNGRLAMIAFLGFF 155
 
Name Accession Description Interval E-value
PLN00089 PLN00089
fucoxanthin-chlorophyll a/c binding protein; Provisional
 1-206 5.87e-129

fucoxanthin-chlorophyll a/c binding protein; Provisional


Pssm-ID: 177710 [Multi-domain]  Cd Length: 209  Bit Score: 361.31  E-value: 5.87e-129
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219124057   1 MKSIIFASLLTSAAAFAPASSSTTRTATPTALNEEFCRGYVGGESVEPMFIGKTGSKNFDPLGLTEKVPEWVPWFRESEL 80
Cdd:PLN00089   1 MKFAIFAALCASAAAAAPAQKSRTRPATPTAAAEDDCPGAIGFAAKEFMFIGKTGSKKFDPLGLAEKVEEFLPWFRESEL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219124057  81 KHGRAAMLAVAGFVVPEFVRVPGEAYSFAAIPNVIDAHDALPQ--AMIQIFAWISFVE-AVSFPALANMNEFDRVPGDFG 157
Cdd:PLN00089  81 KHGRAAMLAVAGFIAPDFVRIPGEAYSFAAIPKTIDAHDALLKsgAMIQIFAWIGFVDlAVSAPAAAAAAEFDRTPGDFG 160

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*....
gi 219124057 158 FDPLKLYPKDAAKQEQMQLKELKNGRLAMVAIGGMVTGSAITGHGFPYL 206
Cdd:PLN00089 161 FDLLALYPKDAAKMEKKKDKELKNGRLAMVAIGGIATGSAITGHGFPYI 209
Chloroa_b-bind pfam00504
Chlorophyll A-B binding protein;
59-193 2.14e-43

Chlorophyll A-B binding protein;


Pssm-ID: 459836 [Multi-domain]  Cd Length: 159  Bit Score: 142.83  E-value: 2.14e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219124057   59 FDPLGLTEKvPEWVPWFRESELKHGRAAMLAVAGFVVPEFVRVPG--EAYSFAAIPNVIDAHDALPQAM-IQIFAWISFV 135
Cdd:pfam00504  15 FDPLGLSAD-PETFKRYREAELKHGRWAMLAVLGALVPEALGKLGggNEPVWFEAGAVALHAQSVPTLLaLQILLLMGFL 93

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 219124057  136 EAVSFPALANMNEFD----RVPGDFGFDPLKLYPKDAAKQEQMQLKELKNGRLAMVAIGGMV 193
Cdd:pfam00504  94 ELARWQGGKAPGLGGggdrGYPGGFGFDPLGLAKKDPETLAELKLKELKNGRLAMIAFLGFF 155
PLN00099 PLN00099
light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional
 40-202 3.15e-21

light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional


Pssm-ID: 177717  Cd Length: 243  Bit Score: 87.78  E-value: 3.15e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219124057  40 YVGGESVEPMFIGKT-GSKNFDPLGLTEkVPEWVPWFRESELKHGRAAMLAVAGFVVPEFVRVPG--EAYSFAAIPNVID 116
Cdd:PLN00099  47 WMPGQPRPPYLDGSApGDFGFDPLRLGE-VPENLERYKESELIHCRWAMLAVPGILVPEALGLGNwvKAQEWAAIPGGQA 125

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219124057 117 AH-------DALPQAMIQIFAWISFVEAVSfpALANMNEFDRVPGDfGFDPLKlYPKDAAKQEQMQLKELKNGRLAMVA- 188
Cdd:PLN00099 126 TYlgnpvpwGTLPTILAIEFLAIAFVEHQR--SMEKDPEKKKYPGG-AFDPLG-YSKDPKKFEEYKVKEIKNGRLALLAf 201

                        170
                 ....*....|....
gi 219124057 189 IGGMVTGSAITGHG 202
Cdd:PLN00099 202 VGFCVQQSAYPGTG 215
PLN00100 PLN00100
light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional
 55-202 4.76e-19

light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional


Pssm-ID: 215054  Cd Length: 246  Bit Score: 81.85  E-value: 4.76e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219124057  55 GSKNFDPLGLTEKvPEWVPWFRESELKHGRAAMLAVAGFVVPEFVRVPgeaySFAAIPNVIDAHDALPQAMIQIFAwISF 134
Cdd:PLN00100  54 GDYGFDPLRLGAN-PETLPYLQEAELMNGRWAMAATAGILFTDAVGLP----KFWEAGAEKYGLDLQTLVLIQVVV-MAV 127

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 219124057 135 VEAVSFPALANMNEfDRVPGDFGFDPLKLypkdaaKQEQMQLKELKNGRLAMVAIGGMVTGSAITGHG 202
Cdd:PLN00100 128 LEAARYRGFMKTGE-SGVLSFFPFDPTGM------DSPEMKVKEVKNGRLAMLAFLGMVSQYAVTGKS 188
PLN00097 PLN00097
photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional
 55-202 1.34e-18

photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional


Pssm-ID: 165670 [Multi-domain]  Cd Length: 244  Bit Score: 80.82  E-value: 1.34e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219124057  55 GSKNFDPLGLTEKvPEWVPWFRESELKHGRAAMLAVAGFVVPEFVRVPGeaysFAAIPNVIDAHD-------ALPQAMIQ 127
Cdd:PLN00097  63 CDYGFDPLNLGAD-PEMLKWFVQAELMHARWAMLGLAGCVAPELLTKIG----MADLPNWIDAAKwdgywagAGPLFFIQ 137

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219124057 128 I--FAWISFVEAVSFPALANMNEfDRVPG--------DFG-----FDPLKlYPKDAAKQEQMQLKELKNGRLAMVAIGGM 192
Cdd:PLN00097 138 MamFNWAEIRRWQDMKAPGSMNE-DPLFGankgdtntDVGypkglFDKFG-WAKDEKKAAELKLKEIANGRLAMLAFLGC 215

                        170
                 ....*....|
gi 219124057 193 VTGSAITGHG 202
Cdd:PLN00097 216 CAQAIQTGTG 225
PLN00120 PLN00120
fucoxanthin-chlorophyll a-c binding protein; Provisional
 1-193 1.56e-18

fucoxanthin-chlorophyll a-c binding protein; Provisional


Pssm-ID: 215063  Cd Length: 202  Bit Score: 79.79  E-value: 1.56e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219124057   1 MKSIIFASLLTSAAAFAPASSSTTRT--ATPTALNEEfcrgyvggesvepmfIGKTGSKNF-DPLGLT-----EKVPEwv 72
Cdd:PLN00120   1 MKSALFASLIASAAAFAPAQVAKARTsvATNMAFENE---------------LGAQAPLGFfDPLGLVddgdqEKFDR-- 63

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219124057  73 pwFRESELKHGRAAMLAVAGFVVPEF-VRVPGE----AYSFAAIPNVIDAHDALPQA-MIQIFAWISFVEAVSFPALANM 146
Cdd:PLN00120  64 --LRYVEIKHGRISMLAVVGYLVTEAgIRLPGDidysGTSFSDIPNGFAALDAIPTAgLLQILAFIGFLELAVMKDITGE 141

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 219124057 147 NEFdrvPGD-------FGFDPLklypkDAAKQEQMQLKELKNGRLAMVAI-GGMV 193
Cdd:PLN00120 142 GEF---VGDfrngyidFGWDSF-----DEETKLKKRAIELNQGRAAQMGIlALMV 188
PLN00147 PLN00147
light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional
 55-202 5.60e-16

light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional


Pssm-ID: 215076 [Multi-domain]  Cd Length: 252  Bit Score: 73.76  E-value: 5.60e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219124057  55 GSKNFDPLGLTEKvPEWVPWFRESELKHGRAAMLAVAGFVVPEFVRVPG--------EA----YSFAAIPNVIdahdaLP 122
Cdd:PLN00147  64 GDFGFDPLGLGED-PESLKWYVQAELVHSRFAMAGVAGILFTDLLRVTGirnlpvwyEAgavkFEFASTRTLF-----VV 137

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219124057 123 QAMIQIFA----WISFV------EAVSF----PALANMNEfdRVPGDFGFDPLKLyPKDAAKQEQMQLKELKNGRLAMVA 188
Cdd:PLN00147 138 QLLLMGFAetkrYMDFVspgsqaKEGSFfgleAALEGLEP--GYPGGPLFNPLGL-AKDIENAHDWKLKEIKNGRLAMVA 214

                        170
                 ....*....|....
gi 219124057 189 IGGMVTGSAITGHG 202
Cdd:PLN00147 215 MLGFFVQASVTHTG 228
PLN00101 PLN00101
Photosystem I light-harvesting complex type 4 protein; Provisional
 55-202 8.77e-15

Photosystem I light-harvesting complex type 4 protein; Provisional


Pssm-ID: 215055 [Multi-domain]  Cd Length: 250  Bit Score: 70.71  E-value: 8.77e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219124057  55 GSKNFDPLGLTEKvPEWVPWFRESELKHGRAAMLAVAGFVVPEFVRVPGeaysfaaIPNVIDAHDA------LPQAMIQI 128
Cdd:PLN00101  72 GDNGFDPLGLAED-PENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIG-------IINAPQWYDAgkaeyfASSSTLFV 143

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219124057 129 FAWISF--VEA-----VSFPALANMN----EFDRVPGDFG-----FDPLKLYPKDAAKQeqmqlKELKNGRLAMVAIGGM 192
Cdd:PLN00101 144 IEFILFhyVEIrrwqdIKNPGSVNQDpifkQYSLPPNEVGypggiFNPLNFAPTEEAKE-----KELANGRLAMLAFLGF 218

                        170
                 ....*....|
gi 219124057 193 VTGSAITGHG 202
Cdd:PLN00101 219 VVQHNVTGKG 228
PLN00048 PLN00048
photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional
 55-205 1.24e-12

photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional


Pssm-ID: 177680 [Multi-domain]  Cd Length: 262  Bit Score: 64.87  E-value: 1.24e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219124057  55 GSKNFDPLGLTEKV-------PEWVPWfreSELKHGRAAMLAVAGFVVPEF-------------------VRVPGEAYSF 108
Cdd:PLN00048  61 GDFGFDPLGLSDPEgaggfiePQWLAY---GEVINGRFAMLGAAGAIAPEIlgkaglipqetalpwfqsgVIPPAGTYDY 137

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219124057 109 AAIPNVIDAhdaLPQAMIQiFAWISFVEAVSFPALANMNEF-----------DRV-PGDFGFDPLKLyPKDAAKQEQMQL 176
Cdd:PLN00048 138 WADPYTLFV---LEMALMG-FAEHRRAQDYYKPGSMGKQYFlglekglggsgNPAyPGGPFFNPLGF-GKDEKSMKELKL 212

                        170       180
                 ....*....|....*....|....*....
gi 219124057 177 KELKNGRLAMVAIGGMVTGSAITGHGfPY 205
Cdd:PLN00048 213 KEVKNGRLAMLAILGYFIQALVTGVG-PF 240
PLN00187 PLN00187
photosystem II light-harvesting complex II protein Lhcb4; Provisional
 75-202 1.91e-12

photosystem II light-harvesting complex II protein Lhcb4; Provisional


Pssm-ID: 177781  Cd Length: 286  Bit Score: 64.43  E-value: 1.91e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219124057  75 FRESELKHGRAAMLAVAGFVVPEFVrvPGEAYSFAAIPNVIDAHDALPQAM---IQIFAWIS--FVEAVSFPALANMNEF 149
Cdd:PLN00187 133 FRECELIHGRWAMLATLGALSVEAL--TGVTWQDAGKVELVDGSSYLGQPLpfsITTLIWIEvlVIGYIEFQRNAELDPE 210

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....
gi 219124057 150 DRV-PGDFGFDPLKLyPKDAAKQEQMQLKELKNGRLAMVAIGGMVTGSAITGHG 202
Cdd:PLN00187 211 KRLyPGGKFFDPLGL-AADPEKKETLQLAEIKHARLAMVAFLGFAVQAAATGKG 263
PLN00170 PLN00170
photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional
 42-189 1.00e-11

photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional


Pssm-ID: 215087 [Multi-domain]  Cd Length: 255  Bit Score: 62.26  E-value: 1.00e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219124057  42 GGESVEPMFIGKT--GSKNFDPLGLTeKVPEWVPWFRESELKHGRAAMLAVAGFVVpefvrvpGEAYS------FAAIPN 113
Cdd:PLN00170  61 GGNLVDPEWLDGSlpGDYGFDPLGLG-KDPAFLKWYREAELIHGRWAMAAVVGIFV-------GQAWSgipwfeAGADPG 132

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219124057 114 VID--AHDALPQAMIQIFAWISFVEAVSF------------------PALANMNEFDRVPGDFGFDPLKL--------YP 165
Cdd:PLN00170 133 AIApfSFGSLLGTQLLLMGWVESKRWVDFfnpdsqsvewatpwsrtaENFANATGLQGYPGGKFFDPLGLagtvkdgvYI 212

                        170       180
                 ....*....|....*....|....
gi 219124057 166 KDAAKQEQMQLKELKNGRLAMVAI 189
Cdd:PLN00170 213 PDFEKLERLKLAEIKHARLAMVAM 236
PLN00098 PLN00098
light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional
 55-202 1.01e-11

light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional


Pssm-ID: 177716  Cd Length: 267  Bit Score: 62.24  E-value: 1.01e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219124057  55 GSKNFDPLGLTEKvPEWVPWFRESELKHGRAAMLAVAGFVVPEFVRVPG--EAYS--------FAAIPNVIDAHDALPQA 124
Cdd:PLN00098  81 GDFGFDPLGLGSD-PELLKWFAQAELMHSRWAMLAVAGILIPECLERLGfiENFSwydagareYFADPTTLFVVQMVLMG 159

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219124057 125 MIQIFAWISFVEA------VSFPALANMNEFDRVPGDFGFDPLKLYPKDAAKQEQMQLKELKNGRLAMVAIGGMVTGSAI 198
Cdd:PLN00098 160 WAEGRRWADLIKPgcvdiePKLPNKTNPKPDVGYPGGLWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGFCFQAVY 239


                 ....
gi 219124057 199 TGHG 202
Cdd:PLN00098 240 TGEG 243
PLN00171 PLN00171
photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional
 55-202 4.47e-10

photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional


Pssm-ID: 215088  Cd Length: 324  Bit Score: 57.89  E-value: 4.47e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219124057  55 GSKNFDPLGLTEKVPEWVPWFrESELKHGRAAMLAVAGFVVPE-------------------FVRVPGEAYSFAAIPNVi 115
Cdd:PLN00171 129 GDYGFDIAGLGKDPVAFDKYF-NFEILHARWAMLAALGVVIPEvldlfgavhfaepvwwrvgYAKLQGDTLDYLGIPGL- 206

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219124057 116 daHDALPQAMIQI------------FAWISFVEAVS-----FPALANMnefdrvPGDFGFDPLKLyPKDAAKQEQMQLKE 178
Cdd:PLN00171 207 --HIAGSQGVIVIaicqallmvgpeYARYCGIEALEplgiyLPGDINY------PGGALFDPLGL-SKDPVAFEDLKVKE 277

                        170       180
                 ....*....|....*....|....
gi 219124057 179 LKNGRLAMVAIGGMVTGSAITGHG 202
Cdd:PLN00171 278 IKNGRLAMVAWLGFYIQAAVTGKG 301
Chloroa_b-bind pfam00504
Chlorophyll A-B binding protein;
38-98 5.38e-10

Chlorophyll A-B binding protein;


Pssm-ID: 459836 [Multi-domain]  Cd Length: 159  Bit Score: 55.78  E-value: 5.38e-10
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 219124057   38 RGYVGGESVEPMFIGKTGSKNFDPLGLTEKVPEWVPWFRESELKHGRAAMLAVAGFVVPEF 98
Cdd:pfam00504  99 QGGKAPGLGGGGDRGYPGGFGFDPLGLAKKDPETLAELKLKELKNGRLAMIAFLGFFVQEL 159
PLN00025 PLN00025
photosystem II light harvesting chlorophyll a/b binding protein; Provisional
 40-202 2.18e-08

photosystem II light harvesting chlorophyll a/b binding protein; Provisional


Pssm-ID: 215033 [Multi-domain]  Cd Length: 262  Bit Score: 52.83  E-value: 2.18e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219124057  40 YVGGEsvepmFIGKTGsknFDPLGLTEKvPEWVPWFRESELKHGRAAMLAVAGFVVPEF---VRVP-GEAYSFAA---I- 111
Cdd:PLN00025  65 YLTGE-----FPGDYG---WDTAGLSAD-PETFARNRELEVIHARWAMLGALGCVTPELlakNGVKfGEAVWFKAgaqIf 135

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219124057 112 ----------PNVIDAhdalpQAMIQIFAW----ISFVEA--VSFPALANMNefDRV-PGDfGFDPLKLyPKDAAKQEQM 174
Cdd:PLN00025 136 seggldylgnPSLVHA-----QSILAIWACqvvlMGAVEGyrVNGGPLGEGL--DPLyPGG-SFDPLGL-ADDPDTFAEL 206

                        170       180
                 ....*....|....*....|....*...
gi 219124057 175 QLKELKNGRLAMVAIGGMVTGSAITGHG 202
Cdd:PLN00025 207 KVKEIKNGRLAMFSMFGFFVQAIVTGKG 234
Chloroa_b-bind pfam00504
Chlorophyll A-B binding protein;
152-204 8.19e-08

Chlorophyll A-B binding protein;


Pssm-ID: 459836 [Multi-domain]  Cd Length: 159  Bit Score: 49.61  E-value: 8.19e-08
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|...
gi 219124057  152 VPGDFGFDPLKLyPKDAAKQEQMQLKELKNGRLAMVAIGGMVTGSAITGHGFP 204
Cdd:pfam00504   9 LPGDYGFDPLGL-SADPETFKRYREAELKHGRWAMLAVLGALVPEALGKLGGG 60
PLN00147 PLN00147
light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional
 44-99 2.27e-04

light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional


Pssm-ID: 215076 [Multi-domain]  Cd Length: 252  Bit Score: 41.02  E-value: 2.27e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 219124057  44 ESVEPmfiGKTGSKNFDPLGLTEKVPEWVPWfRESELKHGRAAMLAVAGFVVPEFV 99
Cdd:PLN00147 173 EGLEP---GYPGGPLFNPLGLAKDIENAHDW-KLKEIKNGRLAMVAMLGFFVQASV 224
PLN00097 PLN00097
photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional
 152-202 8.38e-04

photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional


Pssm-ID: 165670 [Multi-domain]  Cd Length: 244  Bit Score: 39.22  E-value: 8.38e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|.
gi 219124057 152 VPGDFGFDPLKLyPKDAAKQEQMQLKELKNGRLAMVAIGGMVTGSAITGHG 202
Cdd:PLN00097  61 LPCDYGFDPLNL-GADPEMLKWFVQAELMHARWAMLGLAGCVAPELLTKIG 110
PLN00171 PLN00171
photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional
 35-95 2.26e-03

photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional


Pssm-ID: 215088  Cd Length: 324  Bit Score: 38.24  E-value: 2.26e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 219124057  35 EFCRgYVGGESVEPMFIGKTGSKN------FDPLGLTeKVPEWVPWFRESELKHGRAAMLAVAGFVV 95
Cdd:PLN00171 229 EYAR-YCGIEALEPLGIYLPGDINypggalFDPLGLS-KDPVAFEDLKVKEIKNGRLAMVAWLGFYI 293
PLN00187 PLN00187
photosystem II light-harvesting complex II protein Lhcb4; Provisional
 55-95 2.45e-03

photosystem II light-harvesting complex II protein Lhcb4; Provisional


Pssm-ID: 177781  Cd Length: 286  Bit Score: 37.85  E-value: 2.45e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|.
gi 219124057  55 GSKNFDPLGLTEKvPEWVPWFRESELKHGRAAMLAVAGFVV 95
Cdd:PLN00187 216 GGKFFDPLGLAAD-PEKKETLQLAEIKHARLAMVAFLGFAV 255
PLN00048 PLN00048
photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional
 152-193 2.75e-03

photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional


Pssm-ID: 177680 [Multi-domain]  Cd Length: 262  Bit Score: 37.52  E-value: 2.75e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*.
gi 219124057 152 VPGDFGFDPLKLYPKDAA----KQEQMQLKELKNGRLAMVAIGGMV 193
Cdd:PLN00048  59 LPGDFGFDPLGLSDPEGAggfiEPQWLAYGEVINGRFAMLGAAGAI 104
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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