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Conserved domains on  [gi|219123709|ref|XP_002182162|]
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protein fucoxanthin chlorophyll a/c protein [Phaeodactylum tricornutum CCAP 1055/1]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PLN00089 PLN00089
fucoxanthin-chlorophyll a/c binding protein; Provisional
 1-198 8.68e-116

fucoxanthin-chlorophyll a/c binding protein; Provisional


:

Pssm-ID: 177710 [Multi-domain]  Cd Length: 209  Bit Score: 327.80  E-value: 8.68e-116
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219123709   1 MKFAILAALCASSALAFTPQKSRVTPSVSTSAAVDDMPGAINFAAKEF---------KFDPLKLAETYEPFLPWFRESEL 71
Cdd:PLN00089   1 MKFAIFAALCASAAAAAPAQKSRTRPATPTAAAEDDCPGAIGFAAKEFmfigktgskKFDPLGLAEKVEEFLPWFRESEL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219123709  72 RHGRTAMLAVVGFIATDFVRIPGEAYSFAAIPKTIDAHDALLKSGPMYQLLLWIGLWDLIVTAPAAVAAAKGERTPGDFG 151
Cdd:PLN00089  81 KHGRAAMLAVAGFIAPDFVRIPGEAYSFAAIPKTIDAHDALLKSGAMIQIFAWIGFVDLAVSAPAAAAAAEFDRTPGDFG 160

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*....
gi 219123709 152 WTLMA--PKDDAKMQKKKDSELLNGRLAMVAVGGIATQSVITGHGFPYI 198
Cdd:PLN00089 161 FDLLAlyPKDAAKMEKKKDKELKNGRLAMVAIGGIATGSAITGHGFPYI 209
 
Name Accession Description Interval E-value
PLN00089 PLN00089
fucoxanthin-chlorophyll a/c binding protein; Provisional
 1-198 8.68e-116

fucoxanthin-chlorophyll a/c binding protein; Provisional


Pssm-ID: 177710 [Multi-domain]  Cd Length: 209  Bit Score: 327.80  E-value: 8.68e-116
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219123709   1 MKFAILAALCASSALAFTPQKSRVTPSVSTSAAVDDMPGAINFAAKEF---------KFDPLKLAETYEPFLPWFRESEL 71
Cdd:PLN00089   1 MKFAIFAALCASAAAAAPAQKSRTRPATPTAAAEDDCPGAIGFAAKEFmfigktgskKFDPLGLAEKVEEFLPWFRESEL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219123709  72 RHGRTAMLAVVGFIATDFVRIPGEAYSFAAIPKTIDAHDALLKSGPMYQLLLWIGLWDLIVTAPAAVAAAKGERTPGDFG 151
Cdd:PLN00089  81 KHGRAAMLAVAGFIAPDFVRIPGEAYSFAAIPKTIDAHDALLKSGAMIQIFAWIGFVDLAVSAPAAAAAAEFDRTPGDFG 160

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*....
gi 219123709 152 WTLMA--PKDDAKMQKKKDSELLNGRLAMVAVGGIATQSVITGHGFPYI 198
Cdd:PLN00089 161 FDLLAlyPKDAAKMEKKKDKELKNGRLAMVAIGGIATGSAITGHGFPYI 209
Chloroa_b-bind pfam00504
Chlorophyll A-B binding protein;
48-187 5.93e-25

Chlorophyll A-B binding protein;


Pssm-ID: 459836 [Multi-domain]  Cd Length: 159  Bit Score: 95.07  E-value: 5.93e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219123709   48 FKFDPLKLAETYEPFlPWFRESELRHGRTAMLAVVGFIATDFV-RIPGEAYSFAAIPKTIDAHDALLKSGPMYQLLLWIG 126
Cdd:pfam00504  13 YGFDPLGLSADPETF-KRYREAELKHGRWAMLAVLGALVPEALgKLGGGNEPVWFEAGAVALHAQSVPTLLALQILLLMG 91

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 219123709  127 ---LWDLIVTAPAAVAAAKGERTPGDFGWTLM--APKDDAKMQKKKDSELLNGRLAMVAVGGIATQ 187
Cdd:pfam00504  92 fleLARWQGGKAPGLGGGGDRGYPGGFGFDPLglAKKDPETLAELKLKELKNGRLAMIAFLGFFVQ 157
LHCA5 COG5743
Photosystem I light harvesting complex protein, LHCA5/LHCA6/HLI5/Ycf17 family [Energy ...
 150-195 2.92e-04

Photosystem I light harvesting complex protein, LHCA5/LHCA6/HLI5/Ycf17 family [Energy production and conversion]; Photosystem I light harvesting complex protein, LHCA5/LHCA6/HLI5/Ycf17 family is part of the Pathway/BioSystem: Photosystem I


Pssm-ID: 444453 [Multi-domain]  Cd Length: 62  Bit Score: 37.61  E-value: 2.92e-04
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*..
gi 219123709 150 FGWTlmapkddakmqkkKDSELLNGRLAMVA-VGGIATQsVITGHGF 195
Cdd:COG5743   23 FGFT-------------PYAERLNGRLAMIGfVALLLIE-LLTGQGF 55
 
Name Accession Description Interval E-value
PLN00089 PLN00089
fucoxanthin-chlorophyll a/c binding protein; Provisional
 1-198 8.68e-116

fucoxanthin-chlorophyll a/c binding protein; Provisional


Pssm-ID: 177710 [Multi-domain]  Cd Length: 209  Bit Score: 327.80  E-value: 8.68e-116
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219123709   1 MKFAILAALCASSALAFTPQKSRVTPSVSTSAAVDDMPGAINFAAKEF---------KFDPLKLAETYEPFLPWFRESEL 71
Cdd:PLN00089   1 MKFAIFAALCASAAAAAPAQKSRTRPATPTAAAEDDCPGAIGFAAKEFmfigktgskKFDPLGLAEKVEEFLPWFRESEL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219123709  72 RHGRTAMLAVVGFIATDFVRIPGEAYSFAAIPKTIDAHDALLKSGPMYQLLLWIGLWDLIVTAPAAVAAAKGERTPGDFG 151
Cdd:PLN00089  81 KHGRAAMLAVAGFIAPDFVRIPGEAYSFAAIPKTIDAHDALLKSGAMIQIFAWIGFVDLAVSAPAAAAAAEFDRTPGDFG 160

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*....
gi 219123709 152 WTLMA--PKDDAKMQKKKDSELLNGRLAMVAVGGIATQSVITGHGFPYI 198
Cdd:PLN00089 161 FDLLAlyPKDAAKMEKKKDKELKNGRLAMVAIGGIATGSAITGHGFPYI 209
Chloroa_b-bind pfam00504
Chlorophyll A-B binding protein;
48-187 5.93e-25

Chlorophyll A-B binding protein;


Pssm-ID: 459836 [Multi-domain]  Cd Length: 159  Bit Score: 95.07  E-value: 5.93e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219123709   48 FKFDPLKLAETYEPFlPWFRESELRHGRTAMLAVVGFIATDFV-RIPGEAYSFAAIPKTIDAHDALLKSGPMYQLLLWIG 126
Cdd:pfam00504  13 YGFDPLGLSADPETF-KRYREAELKHGRWAMLAVLGALVPEALgKLGGGNEPVWFEAGAVALHAQSVPTLLALQILLLMG 91

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 219123709  127 ---LWDLIVTAPAAVAAAKGERTPGDFGWTLM--APKDDAKMQKKKDSELLNGRLAMVAVGGIATQ 187
Cdd:pfam00504  92 fleLARWQGGKAPGLGGGGDRGYPGGFGFDPLglAKKDPETLAELKLKELKNGRLAMIAFLGFFVQ 157
PLN00100 PLN00100
light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional
 22-194 1.20e-14

light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional


Pssm-ID: 215054  Cd Length: 246  Bit Score: 69.90  E-value: 1.20e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219123709  22 SRVTPSVSTSAAVDDMPGAINFA------AKEFKFDPLKLAETYEPfLPWFRESELRHGRTAMLAVVGFIATDFVripge 95
Cdd:PLN00100  24 RRPRVRVAARARPMWYPGATAPKyldgtmAGDYGFDPLRLGANPET-LPYLQEAELMNGRWAMAATAGILFTDAV----- 97

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219123709  96 aysfaAIPKTIDAHDAllKSGPMYQLLLWIglwDLIVTAPAAVAAAKGERTPGDFGWTLMAPKDDAKMQ--KKKDSELLN 173
Cdd:PLN00100  98 -----GLPKFWEAGAE--KYGLDLQTLVLI---QVVVMAVLEAARYRGFMKTGESGVLSFFPFDPTGMDspEMKVKEVKN 167

                        170       180
                 ....*....|....*....|.
gi 219123709 174 GRLAMVAVGGIATQSVITGHG 194
Cdd:PLN00100 168 GRLAMLAFLGMVSQYAVTGKS 188
PLN00120 PLN00120
fucoxanthin-chlorophyll a-c binding protein; Provisional
 1-181 2.86e-14

fucoxanthin-chlorophyll a-c binding protein; Provisional


Pssm-ID: 215063  Cd Length: 202  Bit Score: 68.23  E-value: 2.86e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219123709   1 MKFAILAALCASSALAFTPQKSRVTPSVSTSAAVDDMPGA---INFaakefkFDPLKL-AETYEPFLPWFRESELRHGRT 76
Cdd:PLN00120   1 MKSALFASLIASAAAFAPAQVAKARTSVATNMAFENELGAqapLGF------FDPLGLvDDGDQEKFDRLRYVEIKHGRI 74

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219123709  77 AMLAVVGFIATDF-VRIPGE----AYSFAAIPKTIDAHDALLKSGpMYQLLLWIGLWDLIVtapAAVAAAKGErTPGD-- 149
Cdd:PLN00120  75 SMLAVVGYLVTEAgIRLPGDidysGTSFSDIPNGFAALDAIPTAG-LLQILAFIGFLELAV---MKDITGEGE-FVGDfr 149

                        170       180       190
                 ....*....|....*....|....*....|....*..
gi 219123709 150 -----FGWTLMapkDDAKMQKKKDSELLNGRLAMVAV 181
Cdd:PLN00120 150 ngyidFGWDSF---DEETKLKKRAIELNQGRAAQMGI 183
PLN00097 PLN00097
photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional
 47-194 7.76e-11

photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional


Pssm-ID: 165670 [Multi-domain]  Cd Length: 244  Bit Score: 59.25  E-value: 7.76e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219123709  47 EFKFDPLKLAETYEpFLPWFRESELRHGRTAMLAVVGFIATDFVRIPGeaysFAAIPKTIDA---HDALLKSGPMYQLLL 123
Cdd:PLN00097  64 DYGFDPLNLGADPE-MLKWFVQAELMHARWAMLGLAGCVAPELLTKIG----MADLPNWIDAakwDGYWAGAGPLFFIQM 138

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219123709 124 WIGLWDLI-----------VTAPAAVAAAKGErTPGDFGWT--LMAP----KDDAKMQKKKDSELLNGRLAMVAVGGIAT 186
Cdd:PLN00097 139 AMFNWAEIrrwqdmkapgsMNEDPLFGANKGD-TNTDVGYPkgLFDKfgwaKDEKKAAELKLKEIANGRLAMLAFLGCCA 217


                 ....*...
gi 219123709 187 QSVITGHG 194
Cdd:PLN00097 218 QAIQTGTG 225
PLN00147 PLN00147
light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional
 45-194 6.25e-10

light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional


Pssm-ID: 215076 [Multi-domain]  Cd Length: 252  Bit Score: 56.81  E-value: 6.25e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219123709  45 AKEFKFDPLKLAETYEPfLPWFRESELRHGRTAMLAVVGFIATDFVRIPGEA-----YSFAAIPKTIDAHDALLksgpMY 119
Cdd:PLN00147  63 AGDFGFDPLGLGEDPES-LKWYVQAELVHSRFAMAGVAGILFTDLLRVTGIRnlpvwYEAGAVKFEFASTRTLF----VV 137

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219123709 120 QlLLWIGLWDlivTAPAAVAAAKGERT----------------PGDFGWTLMAP----KDDAKMQKKKDSELLNGRLAMV 179
Cdd:PLN00147 138 Q-LLLMGFAE---TKRYMDFVSPGSQAkegsffgleaaleglePGYPGGPLFNPlglaKDIENAHDWKLKEIKNGRLAMV 213

                        170
                 ....*....|....*
gi 219123709 180 AVGGIATQSVITGHG 194
Cdd:PLN00147 214 AMLGFFVQASVTHTG 228
PLN00099 PLN00099
light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional
 26-194 1.93e-09

light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional


Pssm-ID: 177717  Cd Length: 243  Bit Score: 55.42  E-value: 1.93e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219123709  26 PSVSTSAAV----DDMPGAIN------FAAKEFKFDPLKLAETYEPfLPWFRESELRHGRTAMLAVVGFIATDFVRIPG- 94
Cdd:PLN00099  33 PNANGSSRVtmsaDWMPGQPRppyldgSAPGDFGFDPLRLGEVPEN-LERYKESELIHCRWAMLAVPGILVPEALGLGNw 111

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219123709  95 -EAYSFAAIPKTidahdallKSGPMYQLLLWIGLWDLIVTAPAAVAAAKGERT----------PGDFGWTLMAPKDDAKM 163
Cdd:PLN00099 112 vKAQEWAAIPGG--------QATYLGNPVPWGTLPTILAIEFLAIAFVEHQRSmekdpekkkyPGGAFDPLGYSKDPKKF 183

                        170       180       190
                 ....*....|....*....|....*....|..
gi 219123709 164 QKKKDSELLNGRLAMVA-VGGIATQSVITGHG 194
Cdd:PLN00099 184 EEYKVKEIKNGRLALLAfVGFCVQQSAYPGTG 215
PLN00048 PLN00048
photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional
 47-197 1.78e-08

photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional


Pssm-ID: 177680 [Multi-domain]  Cd Length: 262  Bit Score: 52.93  E-value: 1.78e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219123709  47 EFKFDPLKLAET------YEPflPWFRESELRHGRTAMLAVVGFIATDFV----RIPGE---------------AYSFAA 101
Cdd:PLN00048  62 DFGFDPLGLSDPegaggfIEP--QWLAYGEVINGRFAMLGAAGAIAPEILgkagLIPQEtalpwfqsgvippagTYDYWA 139

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219123709 102 IPKTIDAHDALL-------------KSGPMYQLLLwIGLwdlivtapaaVAAAKGERTPGDFGWTLMAP----KDDAKMQ 164
Cdd:PLN00048 140 DPYTLFVLEMALmgfaehrraqdyyKPGSMGKQYF-LGL----------EKGLGGSGNPAYPGGPFFNPlgfgKDEKSMK 208

                        170       180       190
                 ....*....|....*....|....*....|...
gi 219123709 165 KKKDSELLNGRLAMVAVGGIATQSVITGHGfPY 197
Cdd:PLN00048 209 ELKLKEVKNGRLAMLAILGYFIQALVTGVG-PF 240
Chloroa_b-bind pfam00504
Chlorophyll A-B binding protein;
48-89 1.94e-06

Chlorophyll A-B binding protein;


Pssm-ID: 459836 [Multi-domain]  Cd Length: 159  Bit Score: 45.76  E-value: 1.94e-06
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 219123709   48 FKFDPLKLAETYEPFLPWFRESELRHGRTAMLAVVGFIATDF 89
Cdd:pfam00504 118 FGFDPLGLAKKDPETLAELKLKELKNGRLAMIAFLGFFVQEL 159
PLN00101 PLN00101
Photosystem I light-harvesting complex type 4 protein; Provisional
 50-194 2.24e-06

Photosystem I light-harvesting complex type 4 protein; Provisional


Pssm-ID: 215055 [Multi-domain]  Cd Length: 250  Bit Score: 46.45  E-value: 2.24e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219123709  50 FDPLKLAETYEPfLPWFRESELRHGRTAMLAVVGFIATD-FVRIpgeaySFAAIPKTIDAHDA--LLKSGPMY--QLLLW 124
Cdd:PLN00101  76 FDPLGLAEDPEN-LKWFVQAELVNGRWAMLGVAGMLLPEvFTKI-----GIINAPQWYDAGKAeyFASSSTLFviEFILF 149

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 219123709 125 ----IGLWDLIV---TAPAAVAAAKGERTPGDFGW--TLMAPKDDAKMQKKKDSELLNGRLAMVAVGGIATQSVITGHG 194
Cdd:PLN00101 150 hyveIRRWQDIKnpgSVNQDPIFKQYSLPPNEVGYpgGIFNPLNFAPTEEAKEKELANGRLAMLAFLGFVVQHNVTGKG 228
PLN00098 PLN00098
light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional
 47-194 5.06e-06

light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional


Pssm-ID: 177716  Cd Length: 267  Bit Score: 45.67  E-value: 5.06e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219123709  47 EFKFDPLKLAETYEpFLPWFRESELRHGRTAMLAVVGFIA----------TDFVRIPGEAYSFAAIPKTIDAHDALLK-- 114
Cdd:PLN00098  82 DFGFDPLGLGSDPE-LLKWFAQAELMHSRWAMLAVAGILIpeclerlgfiENFSWYDAGAREYFADPTTLFVVQMVLMgw 160

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219123709 115 -SGPMYQLLLWIGLWDLIVTAPAAVAAAKGERTPG----DFG-WTLMAPKDDAKMQKKkdsELLNGRLAMVAVGGIATQS 188
Cdd:PLN00098 161 aEGRRWADLIKPGCVDIEPKLPNKTNPKPDVGYPGglwfDPMmWGRGSPEPVMVLRTK---EIKNGRLAMLAFVGFCFQA 237


                 ....*.
gi 219123709 189 VITGHG 194
Cdd:PLN00098 238 VYTGEG 243
PLN00170 PLN00170
photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional
 19-93 6.72e-06

photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional


Pssm-ID: 215087 [Multi-domain]  Cd Length: 255  Bit Score: 45.31  E-value: 6.72e-06
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 219123709  19 PQKSRVtPSVSTSAAVDDMPGAINFAAKEFKFDPLKLAETyEPFLPWFRESELRHGRTAMLAVVG-FIATDFVRIP 93
Cdd:PLN00170  50 PKKSWI-PAVKGGGNLVDPEWLDGSLPGDYGFDPLGLGKD-PAFLKWYREAELIHGRWAMAAVVGiFVGQAWSGIP 123
PLN00187 PLN00187
photosystem II light-harvesting complex II protein Lhcb4; Provisional
 61-194 1.43e-04

photosystem II light-harvesting complex II protein Lhcb4; Provisional


Pssm-ID: 177781  Cd Length: 286  Bit Score: 41.31  E-value: 1.43e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219123709  61 PFLPW--------FRESELRHGRTAMLAVVGFIATDFvrIPGEAYSFAAIPKTIDAHDALLKSGPM-YQLLLWIGlwdlI 131
Cdd:PLN00187 120 PFQPYsevfglqrFRECELIHGRWAMLATLGALSVEA--LTGVTWQDAGKVELVDGSSYLGQPLPFsITTLIWIE----V 193

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219123709 132 VTAPAAVAAAKGERTP-------GDFGWTLMAPKDDAKMQKKKDSELLNGRLAMVAVGGIATQSVITGHG 194
Cdd:PLN00187 194 LVIGYIEFQRNAELDPekrlypgGKFFDPLGLAADPEKKETLQLAEIKHARLAMVAFLGFAVQAAATGKG 263
LHCA5 COG5743
Photosystem I light harvesting complex protein, LHCA5/LHCA6/HLI5/Ycf17 family [Energy ...
 150-195 2.92e-04

Photosystem I light harvesting complex protein, LHCA5/LHCA6/HLI5/Ycf17 family [Energy production and conversion]; Photosystem I light harvesting complex protein, LHCA5/LHCA6/HLI5/Ycf17 family is part of the Pathway/BioSystem: Photosystem I


Pssm-ID: 444453 [Multi-domain]  Cd Length: 62  Bit Score: 37.61  E-value: 2.92e-04
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*..
gi 219123709 150 FGWTlmapkddakmqkkKDSELLNGRLAMVA-VGGIATQsVITGHGF 195
Cdd:COG5743   23 FGFT-------------PYAERLNGRLAMIGfVALLLIE-LLTGQGF 55
Chloroa_b-bind pfam00504
Chlorophyll A-B binding protein;
147-196 2.27e-03

Chlorophyll A-B binding protein;


Pssm-ID: 459836 [Multi-domain]  Cd Length: 159  Bit Score: 37.29  E-value: 2.27e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 219123709  147 PGDFGW-TLMAPKDDAKMQKKKDSELLNGRLAMVAVGGIATQSVITGHGFP 196
Cdd:pfam00504  10 PGDYGFdPLGLSADPETFKRYREAELKHGRWAMLAVLGALVPEALGKLGGG 60
PLN00171 PLN00171
photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional
 147-194 4.49e-03

photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional


Pssm-ID: 215088  Cd Length: 324  Bit Score: 37.09  E-value: 4.49e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 219123709 147 PGDF---GWTLMAP----KDDAKMQKKKDSELLNGRLAMVAVGGIATQSVITGHG 194
Cdd:PLN00171 247 PGDInypGGALFDPlglsKDPVAFEDLKVKEIKNGRLAMVAWLGFYIQAAVTGKG 301
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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