NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|218527901|sp|A8SEA7|]
View 

RecName: Full=NAD(P)H-quinone oxidoreductase subunit K, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit K; AltName: Full=NADH-plastoquinone oxidoreductase subunit K

Protein Classification

NADH dehydrogenase subunit K( domain architecture ID 10784660)

NADH dehydrogenase subunit K is a component of NDH-1, which shuttles electrons from an unknown electron donor, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory and/or the photosynthetic chain

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
ndhK CHL00023
NADH dehydrogenase subunit K
 1-228 0e+00

NADH dehydrogenase subunit K


:

Pssm-ID: 214337  Cd Length: 225  Bit Score: 526.97  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 218527901   1 MNSIEFPLFDRTTKNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGT 80
Cdd:CHL00023   1 MNSIEFPLLDRTTSNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGT 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 218527901  81 ITMKMAPSLVRLYEQMPKPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPEAVIDAITKLRKKVSRE 160
Cdd:CHL00023  81 VTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 160

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 218527901 161 IYEDRISSQQENRCFTINHKFRIRRSTHTGNYDQGLLDQSPSTSTSrirPSENFFKYKSTVFSHELVN 228
Cdd:CHL00023 161 IYEDRIRSQQENRCFTTNHKFHVVRSTHTGNYDQELLYQSPSTSEI---PSETFFKYKSSVSSHELVN 225
 
Name Accession Description Interval E-value
ndhK CHL00023
NADH dehydrogenase subunit K
 1-228 0e+00

NADH dehydrogenase subunit K


Pssm-ID: 214337  Cd Length: 225  Bit Score: 526.97  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 218527901   1 MNSIEFPLFDRTTKNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGT 80
Cdd:CHL00023   1 MNSIEFPLLDRTTSNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGT 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 218527901  81 ITMKMAPSLVRLYEQMPKPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPEAVIDAITKLRKKVSRE 160
Cdd:CHL00023  81 VTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 160

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 218527901 161 IYEDRISSQQENRCFTINHKFRIRRSTHTGNYDQGLLDQSPSTSTSrirPSENFFKYKSTVFSHELVN 228
Cdd:CHL00023 161 IYEDRIRSQQENRCFTTNHKFHVVRSTHTGNYDQELLYQSPSTSEI---PSETFFKYKSSVSSHELVN 225
NuoB COG0377
NADH:ubiquinone oxidoreductase 20 kD subunit (chain B) or related Fe-S oxidoreductase [Energy ...
 20-160 4.36e-94

NADH:ubiquinone oxidoreductase 20 kD subunit (chain B) or related Fe-S oxidoreductase [Energy production and conversion]; NADH:ubiquinone oxidoreductase 20 kD subunit (chain B) or related Fe-S oxidoreductase is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440146  Cd Length: 152  Bit Score: 272.05  E-value: 4.36e-94
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 218527901  20 TTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGL-VPRSSPRQADLILTAGTITMKMAPSLVRLYEQMPK 98
Cdd:COG0377    2 TTLDKLVNWARKNSLWPLTFGLACCAIEMMAAGASRYDLERFGAeVPRASPRQADLMIVAGTVTKKMAPVLRRLYEQMPE 81

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 218527901  99 PKYVIAMGACTITGGMFStDSYSTVRGVDKLIPVDVYLPGCPPKPEAVIDAITKLRKKVSRE 160
Cdd:COG0377   82 PKWVIAMGACAISGGPYW-DSYSVVQGVDKIIPVDVYVPGCPPRPEALLDGILKLQEKIRRE 142
nuoB_fam TIGR01957
NADH-quinone oxidoreductase, B subunit; This model describes the B chain of complexes that ...
 16-160 4.65e-88

NADH-quinone oxidoreductase, B subunit; This model describes the B chain of complexes that resemble NADH-quinone oxidoreductases. The electron acceptor is a quinone, ubiquinone, in mitochondria and most bacteria, including Escherichia coli, where the recommended gene symbol is nuoB. The quinone is plastoquinone in Synechocystis (where the chain is designated K) and in chloroplast, where NADH may be replaced by NADPH. In the methanogenic archaeal genus Methanosarcina, NADH is replaced by F420H2. [Energy metabolism, Electron transport]


Pssm-ID: 273896  Cd Length: 145  Bit Score: 256.51  E-value: 4.65e-88
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 218527901   16 SVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGL-VPRSSPRQADLILTAGTITMKMAPSLVRLYE 94
Cdd:TIGR01957   1 GVLLTTVDKLLNWGRSNSLWPLTFGLACCAIEMMATGASRYDLDRFGSeVFRASPRQADVMIVAGTVTKKMAPALRRLYD 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 218527901   95 QMPKPKYVIAMGACTITGGMFSTdSYSTVRGVDKLIPVDVYLPGCPPKPEAVIDAITKLRKKVSRE 160
Cdd:TIGR01957  81 QMPEPKWVISMGACANSGGMFHT-SYSVVQGVDRIVPVDVYIPGCPPRPEALIYGLIKLQKKIKRE 145
Oxidored_q6 pfam01058
NADH ubiquinone oxidoreductase, 20 Kd subunit;
42-153 5.35e-40

NADH ubiquinone oxidoreductase, 20 Kd subunit;


Pssm-ID: 426021 [Multi-domain]  Cd Length: 124  Bit Score: 133.48  E-value: 5.35e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 218527901   42 SCCFIEFASLIGSRFDF-----DRYGLVPRSSPR----QADLILTAGTITMKMAPSLVRLYEQMPKPKYVIAMGACTITG 112
Cdd:pfam01058   2 TGCTISLLALHPPLLDLldlisLRYGIPLMASPReipeGADVLLVEGAVTRKPKEALERLYEAAPKAKYVIAVGTCAAFG 81

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 218527901  113 GMFST-DSYST-VRGVDKLIPVDVYLPGCPPKPEAVIDAITKL 153
Cdd:pfam01058  82 GIPAAgNNPSYgVRPVLEVVPVDINIPGCPPHPEAILGTLLAL 124
 
Name Accession Description Interval E-value
ndhK CHL00023
NADH dehydrogenase subunit K
 1-228 0e+00

NADH dehydrogenase subunit K


Pssm-ID: 214337  Cd Length: 225  Bit Score: 526.97  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 218527901   1 MNSIEFPLFDRTTKNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGT 80
Cdd:CHL00023   1 MNSIEFPLLDRTTSNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGT 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 218527901  81 ITMKMAPSLVRLYEQMPKPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPEAVIDAITKLRKKVSRE 160
Cdd:CHL00023  81 VTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 160

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 218527901 161 IYEDRISSQQENRCFTINHKFRIRRSTHTGNYDQGLLDQSPSTSTSrirPSENFFKYKSTVFSHELVN 228
Cdd:CHL00023 161 IYEDRIRSQQENRCFTTNHKFHVVRSTHTGNYDQELLYQSPSTSEI---PSETFFKYKSSVSSHELVN 225
PRK06411 PRK06411
NADH-quinone oxidoreductase subunit NuoB;
1-160 8.53e-98

NADH-quinone oxidoreductase subunit NuoB;


Pssm-ID: 235797  Cd Length: 183  Bit Score: 282.64  E-value: 8.53e-98
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 218527901   1 MNSIEFPLFDRTTKNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGT 80
Cdd:PRK06411   4 KDEIVTMGLEEELNKGVVLTTLDDLVNWARKNSLWPLTFGLACCAIEMMAAGTSRYDLDRFGMVFRASPRQADLMIVAGT 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 218527901  81 ITMKMAPSLVRLYEQMPKPKYVIAMGACTITGGMFStDSYSTVRGVDKLIPVDVYLPGCPPKPEAVIDAITKLRKKVSRE 160
Cdd:PRK06411  84 LTNKMAPALRRLYDQMPEPKWVISMGSCANSGGMYH-YSYSVVQGVDRIVPVDVYVPGCPPRPEALLYGILKLQKKIRQS 162
NuoB COG0377
NADH:ubiquinone oxidoreductase 20 kD subunit (chain B) or related Fe-S oxidoreductase [Energy ...
 20-160 4.36e-94

NADH:ubiquinone oxidoreductase 20 kD subunit (chain B) or related Fe-S oxidoreductase [Energy production and conversion]; NADH:ubiquinone oxidoreductase 20 kD subunit (chain B) or related Fe-S oxidoreductase is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440146  Cd Length: 152  Bit Score: 272.05  E-value: 4.36e-94
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 218527901  20 TTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGL-VPRSSPRQADLILTAGTITMKMAPSLVRLYEQMPK 98
Cdd:COG0377    2 TTLDKLVNWARKNSLWPLTFGLACCAIEMMAAGASRYDLERFGAeVPRASPRQADLMIVAGTVTKKMAPVLRRLYEQMPE 81

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 218527901  99 PKYVIAMGACTITGGMFStDSYSTVRGVDKLIPVDVYLPGCPPKPEAVIDAITKLRKKVSRE 160
Cdd:COG0377   82 PKWVIAMGACAISGGPYW-DSYSVVQGVDKIIPVDVYVPGCPPRPEALLDGILKLQEKIRRE 142
nuoB_fam TIGR01957
NADH-quinone oxidoreductase, B subunit; This model describes the B chain of complexes that ...
 16-160 4.65e-88

NADH-quinone oxidoreductase, B subunit; This model describes the B chain of complexes that resemble NADH-quinone oxidoreductases. The electron acceptor is a quinone, ubiquinone, in mitochondria and most bacteria, including Escherichia coli, where the recommended gene symbol is nuoB. The quinone is plastoquinone in Synechocystis (where the chain is designated K) and in chloroplast, where NADH may be replaced by NADPH. In the methanogenic archaeal genus Methanosarcina, NADH is replaced by F420H2. [Energy metabolism, Electron transport]


Pssm-ID: 273896  Cd Length: 145  Bit Score: 256.51  E-value: 4.65e-88
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 218527901   16 SVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGL-VPRSSPRQADLILTAGTITMKMAPSLVRLYE 94
Cdd:TIGR01957   1 GVLLTTVDKLLNWGRSNSLWPLTFGLACCAIEMMATGASRYDLDRFGSeVFRASPRQADVMIVAGTVTKKMAPALRRLYD 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 218527901   95 QMPKPKYVIAMGACTITGGMFSTdSYSTVRGVDKLIPVDVYLPGCPPKPEAVIDAITKLRKKVSRE 160
Cdd:TIGR01957  81 QMPEPKWVISMGACANSGGMFHT-SYSVVQGVDRIVPVDVYIPGCPPRPEALIYGLIKLQKKIKRE 145
PRK14819 PRK14819
NADH-quinone oxidoreductase subunit B;
14-160 6.44e-66

NADH-quinone oxidoreductase subunit B;


Pssm-ID: 237822  Cd Length: 264  Bit Score: 204.45  E-value: 6.44e-66
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 218527901  14 KNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGL-VPRSSPRQADLILTAGTITMKMAPSLVRL 92
Cdd:PRK14819  13 KQGVLLTTVNRFYNWGRRSSVWPMAFGLACCAIEMMATGLSRYDLARFGAeLFRASPRQADLMIVAGTVTKKMAPQVVRL 92

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 218527901  93 YEQMPKPKYVIAMGACTITGGMFStDSYSTVRGVDKLIPVDVYLPGCPPKPEAVIDAITKLRKKVSRE 160
Cdd:PRK14819  93 YNQMPEPRYVISMGACATSGGPFR-DGYNVLRGIDLLIPVDVYIPGCPPRPEALLHALMTLQKQIDAQ 159
PRK14816 PRK14816
NADH-quinone oxidoreductase subunit B;
23-160 1.08e-63

NADH-quinone oxidoreductase subunit B;


Pssm-ID: 173277  Cd Length: 182  Bit Score: 195.90  E-value: 1.08e-63
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 218527901  23 NDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGL-VPRSSPRQADLILTAGTITMKMAPSLVRLYEQMPKPKY 101
Cdd:PRK14816  32 DDLINWGRSNSLWPLTFATSCCGIEFMALGAARYDMARFGFeVARASPRQADMIMVCGTITNKMAPVLKRLYDQMADPKY 111

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 218527901 102 VIAMGACTITGGMFSTdSYSTVRGVDKLIPVDVYLPGCPPKPEAVIDAITKLRKKVSRE 160
Cdd:PRK14816 112 VIAVGGCAVSGGPFKK-SYHVLNGVDKILPVDVYIPGCPPRPEAFYYGMMQLQRKVKIE 169
PRK14815 PRK14815
NADH dehydrogenase subunit B; Provisional
 1-160 1.98e-63

NADH dehydrogenase subunit B; Provisional


Pssm-ID: 237821  Cd Length: 183  Bit Score: 195.51  E-value: 1.98e-63
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 218527901   1 MNSIEFPL-FDRTTKNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGL-VPRSSPRQADLILTA 78
Cdd:PRK14815   1 MVTTNTTLtYESGVEGNVVVTTLDAAINWIRKNSLWPMPMGLACCAIELMAVACSRFDISRFGAeVMRFSPRQADVMIVA 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 218527901  79 GTITMKMAPSLVRLYEQMPKPKYVIAMGACTITGGMFStdSYSTVRGVDKLIPVDVYLPGCPPKPEAVIDAITKLRKKVS 158
Cdd:PRK14815  81 GTVTYKMALAVRRIYDQMPEPKWVIAMGACASSGGMYR--SYSVLQGVDRILPVDVYISGCPPRPEAILDALIKLQKKID 158


                 ..
gi 218527901 159 RE 160
Cdd:PRK14815 159 TE 160
PRK14813 PRK14813
NADH dehydrogenase subunit B; Provisional
 11-160 2.14e-63

NADH dehydrogenase subunit B; Provisional


Pssm-ID: 173274  Cd Length: 189  Bit Score: 195.49  E-value: 2.14e-63
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 218527901  11 RTTKNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTITMKMAPSLV 90
Cdd:PRK14813   7 GISNHNVLVTSVDNVLNWARLSSLWPMGFGLACCAIEMMATNASNYDLERFGIFPRSSPRQSDLMIVAGTVTMKMAERVV 86

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 218527901  91 RLYEQMPKPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPEAVIDAITKLRKKVSRE 160
Cdd:PRK14813  87 RLYEQMPEPRYVLSMGSCSNCGGPYWEHGYHVLKGVDRIIPVDVYVPGCPPRPEALIGGLMKVQELIRME 156
PRK13292 PRK13292
NADH-quinone oxidoreductase subunit B/C/D;
12-160 1.56e-59

NADH-quinone oxidoreductase subunit B/C/D;


Pssm-ID: 183955 [Multi-domain]  Cd Length: 788  Bit Score: 200.00  E-value: 1.56e-59
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 218527901  12 TTKNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGL-VPRSSPRQADLILTAGTITMKMAPSLV 90
Cdd:PRK13292   2 TIPENILLASLDDLINWGRANSLWPMFFGLSCCFVEMMTSFTSRYDISRFGAeVLRGTPREADLMVIAGTVFKKMAPSIL 81

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 218527901  91 RLYEQMPKPKYVIAMGACTITGGMFstDSYSTVRGVDKLIPVDVYLPGCPPKPEAVIDAITKLRKKVSRE 160
Cdd:PRK13292  82 RLYEQMAEPKWVISMGSCANSGGMY--DVYSVVQGVNQILPVDVYIPGCPPRPEAFLQGLMLLQEKIRRE 149
PRK14818 PRK14818
NADH dehydrogenase subunit B; Provisional
 19-160 8.92e-58

NADH dehydrogenase subunit B; Provisional


Pssm-ID: 173279  Cd Length: 173  Bit Score: 180.53  E-value: 8.92e-58
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 218527901  19 STTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTITMKMAPSLVRLYEQMPK 98
Cdd:PRK14818  18 TSQLDNLINLARASSLYYLTFGLACCGIELMQTGGPRADVMRFGAIPRASPRQADFMIVAGTLTYKMAERARLLYDQMPE 97

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 218527901  99 PKYVIAMGACTITGGMFSTdSYSTVRGVDKLIPVDVYLPGCPPKPEAVIDAITKLRKKVSRE 160
Cdd:PRK14818  98 PKYVISMGSCSNCGGLFQL-GYSVCKGVDKVIPVDVYVPGCPPRPEALTEGLLRLQEIVRSE 158
PRK14820 PRK14820
NADH-quinone oxidoreductase subunit B;
19-172 9.75e-56

NADH-quinone oxidoreductase subunit B;


Pssm-ID: 184833  Cd Length: 180  Bit Score: 175.79  E-value: 9.75e-56
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 218527901  19 STTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLV-PRSSPRQADLILTAGTITMKMAPSLVRLYEQMP 97
Cdd:PRK14820  20 ATSLDSVIGLARKNSLWPLPFATSCCGIEFMATMASHYDLARFGSErPSFSPRQADMLMVMGTIAKKMAPVLKQVYLQMA 99

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 218527901  98 KPKYVIAMGACTITGGMFstDSYSTVRGVDKLIPVDVYLPGCPPKPEAVIDAITKLRKKVSREIYEDRISSQQEN 172
Cdd:PRK14820 100 EPRWVVAVGACASSGGIF--DTYSVLQGIDRIIPVDVYVPGCPPRPEQIIDGVMRVQELVKNESLRRRNSPEYQE 172
PRK14814 PRK14814
NADH dehydrogenase subunit B; Provisional
 21-165 4.92e-54

NADH dehydrogenase subunit B; Provisional


Pssm-ID: 173275  Cd Length: 186  Bit Score: 171.75  E-value: 4.92e-54
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 218527901  21 TSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLV-PRSSPRQADLILTAGTITMKMAPSLVRLYEQMPKP 99
Cdd:PRK14814  22 NLESVIQWGRSFSLWPYPFATACCGIEYMSTACSDYDIARFGAErPSFSPRQADMILVLGTITYKMAPVLRQIYDQMAEP 101

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 218527901 100 KYVIAMGACTITGGMFSTdsYSTVRGVDKLIPVDVYLPGCPPKPEAVIDAITKLRKKVSREIYEDR 165
Cdd:PRK14814 102 KFVISVGACASSGGMFHT--YGVLQGVDRILPVDVYVPGCPPRPEAILDALVKLQTKLKTQGLEAR 165
HycG COG3260
Ni,Fe-hydrogenase III small subunit [Energy production and conversion];
33-161 4.35e-53

Ni,Fe-hydrogenase III small subunit [Energy production and conversion];


Pssm-ID: 442491  Cd Length: 137  Bit Score: 167.27  E-value: 4.35e-53
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 218527901  33 SLWPLLYGT-SC--CFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTITMKMAPSLVRLYEQMPKPKYVIAMGACT 109
Cdd:COG3260    6 SLWIRHVDAgSCngCEIEILALLTPRYDLERFGIKFVASPRHADVLLVTGPVTRNMREALLRTYEAMPEPKVVVAVGDCA 85

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|..
gi 218527901 110 ITGGMFsTDSYSTVRGVDKLIPVDVYLPGCPPKPEAVIDAITKLRKKVSREI 161
Cdd:COG3260   86 CSGGVF-RDSYAVLGGVDKVIPVDVYIPGCPPRPEAILDGLLKALGRLEEKL 136
PRK14817 PRK14817
NADH-quinone oxidoreductase subunit B;
28-163 1.20e-52

NADH-quinone oxidoreductase subunit B;


Pssm-ID: 173278  Cd Length: 181  Bit Score: 167.83  E-value: 1.20e-52
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 218527901  28 WSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGL-VPRSSPRQADLILTAGTITMKMAPSLVRLYEQMPKPKYVIAMG 106
Cdd:PRK14817  31 WARKYSLFTYPFVTACCGMEYMTMASARYDSDRFGAaMPRFSPRQADLLMVVGTVNCKQAPILQRVYEQMADPKWVMAFG 110

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 218527901 107 ACTITGGMFstDSYSTVRGVDKLIPVDVYLPGCPPKPEAVIDAITKLRKKVSREIYE 163
Cdd:PRK14817 111 VCASSGGFY--DNYATVQGIDRIIPVDVYVPGCPPRPEQVLDGIMLLQKKIQNQSHK 165
Oxidored_q6 pfam01058
NADH ubiquinone oxidoreductase, 20 Kd subunit;
42-153 5.35e-40

NADH ubiquinone oxidoreductase, 20 Kd subunit;


Pssm-ID: 426021 [Multi-domain]  Cd Length: 124  Bit Score: 133.48  E-value: 5.35e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 218527901   42 SCCFIEFASLIGSRFDF-----DRYGLVPRSSPR----QADLILTAGTITMKMAPSLVRLYEQMPKPKYVIAMGACTITG 112
Cdd:pfam01058   2 TGCTISLLALHPPLLDLldlisLRYGIPLMASPReipeGADVLLVEGAVTRKPKEALERLYEAAPKAKYVIAVGTCAAFG 81

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 218527901  113 GMFST-DSYST-VRGVDKLIPVDVYLPGCPPKPEAVIDAITKL 153
Cdd:pfam01058  82 GIPAAgNNPSYgVRPVLEVVPVDINIPGCPPHPEAILGTLLAL 124
FrhG COG1941
Coenzyme F420-reducing hydrogenase, gamma subunit [Energy production and conversion];
100-153 1.38e-10

Coenzyme F420-reducing hydrogenase, gamma subunit [Energy production and conversion];


Pssm-ID: 441544 [Multi-domain]  Cd Length: 262  Bit Score: 59.56  E-value: 1.38e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 218527901 100 KYVIAMGACTITGG------MFSTD------------------------SYSTVRGVDKLIPVDVYLPGCPPKPEAVIDA 149
Cdd:COG1941   79 KILVALGACAVTGGipalrnLYDLEellervygetpstnpqipgeelpeLLDRVRPLSEVVKVDYELPGCPPDPDQILEV 158


                 ....
gi 218527901 150 ITKL 153
Cdd:COG1941  159 LTAL 162
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH