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Conserved domains on  [gi|21756489|dbj|BAC04887|]
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unnamed protein product [Homo sapiens]

Protein Classification

Yip1 family protein( domain architecture ID 229405)

Yip1 family protein localizes to the Golgi complex and may function in regulating membrane dynamics in the endomembrane system

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
YIP1 super family cl46908
Rab GTPase interacting factor, Golgi membrane protein [Intracellular trafficking and secretion] ...
 73-166 1.19e-12

Rab GTPase interacting factor, Golgi membrane protein [Intracellular trafficking and secretion];


The actual alignment was detected with superfamily member COG5080:

Pssm-ID: 481248  Cd Length: 227  Bit Score: 64.41  E-value: 1.19e-12
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21756489  73 ASFVPSEMLMSSGYAGQFFQPASNSDYYSQspyidsfdeEPPLLEELGIHFDHIWQKTLTVLNPMEPVDGSIMNETDLTG 152
Cdd:COG5080  28 ADFEGDQNLGPDPLLDETLLATSTRGVYPG---------DPPLLEELGINFGHIKSKSDDVLGPFDNKAFDILADCDLWG 98

                        90
                ....*....|....
gi 21756489 153 PILFCVALGATLLL 166
Cdd:COG5080  99 PLIFILLYSLFLSL 112
 
Name Accession Description Interval E-value
YIP1 COG5080
Rab GTPase interacting factor, Golgi membrane protein [Intracellular trafficking and secretion] ...
 73-166 1.19e-12

Rab GTPase interacting factor, Golgi membrane protein [Intracellular trafficking and secretion];


Pssm-ID: 227412  Cd Length: 227  Bit Score: 64.41  E-value: 1.19e-12
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21756489  73 ASFVPSEMLMSSGYAGQFFQPASNSDYYSQspyidsfdeEPPLLEELGIHFDHIWQKTLTVLNPMEPVDGSIMNETDLTG 152
Cdd:COG5080  28 ADFEGDQNLGPDPLLDETLLATSTRGVYPG---------DPPLLEELGINFGHIKSKSDDVLGPFDNKAFDILADCDLWG 98

                        90
                ....*....|....
gi 21756489 153 PILFCVALGATLLL 166
Cdd:COG5080  99 PLIFILLYSLFLSL 112
 
Name Accession Description Interval E-value
YIP1 COG5080
Rab GTPase interacting factor, Golgi membrane protein [Intracellular trafficking and secretion] ...
 73-166 1.19e-12

Rab GTPase interacting factor, Golgi membrane protein [Intracellular trafficking and secretion];


Pssm-ID: 227412  Cd Length: 227  Bit Score: 64.41  E-value: 1.19e-12
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21756489  73 ASFVPSEMLMSSGYAGQFFQPASNSDYYSQspyidsfdeEPPLLEELGIHFDHIWQKTLTVLNPMEPVDGSIMNETDLTG 152
Cdd:COG5080  28 ADFEGDQNLGPDPLLDETLLATSTRGVYPG---------DPPLLEELGINFGHIKSKSDDVLGPFDNKAFDILADCDLWG 98

                        90
                ....*....|....
gi 21756489 153 PILFCVALGATLLL 166
Cdd:COG5080  99 PLIFILLYSLFLSL 112
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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