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Conserved domains on  [gi|21666649|gb|AAM73787|]
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cytochrome b, partial (mitochondrion) [Mesoplodon perrini]

Protein Classification

cytochrome b( domain architecture ID 999999)

cytochrome b is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex) that is part of the mitochondrial respiratory chain; contributes to the generation of a proton gradient across the mitochondrial membrane that is then used for ATP synthesis

CATH:  1.20.810.10
Gene Ontology:  GO:0009055|GO:0046872|GO:0022904|GO:0005743|GO:0020037
PubMed:  2509716|8329437
SCOP:  4002208

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
CYTB super family cl31797
cytochrome b; Provisional
 1-87 1.30e-61

cytochrome b; Provisional


The actual alignment was detected with superfamily member MTH00100:

Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 191.00  E-value: 1.30e-61
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21666649    1 IMQILTGLFLAMHYTPDTTMAFSSVAHICRDVNYGWIIRYLHANGASMFFICLYAHIGRGLYYGSYIFQETWNIGVILLF 80
Cdd:MTH00100  42 ILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLF 121


                 ....*..
gi 21666649   81 MVMATAF 87
Cdd:MTH00100 122 TVMATAF 128
 
Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
 1-87 1.30e-61

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 191.00  E-value: 1.30e-61
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21666649    1 IMQILTGLFLAMHYTPDTTMAFSSVAHICRDVNYGWIIRYLHANGASMFFICLYAHIGRGLYYGSYIFQETWNIGVILLF 80
Cdd:MTH00100  42 ILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLF 121


                 ....*..
gi 21666649   81 MVMATAF 87
Cdd:MTH00100 122 TVMATAF 128
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-87 2.03e-34

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 116.31  E-value: 2.03e-34
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21666649   1 IMQILTGLFLAMHYTPDTTMAFSSVAHICRDVNYGWIIRYLHANGASMFFICLYAHIGRGLYYGSYI--FQETWNIGVIL 78
Cdd:cd00284  34 VIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYYGSYKkpRELTWVIGVIL 113


                ....*....
gi 21666649  79 LFMVMATAF 87
Cdd:cd00284 114 LLLTMATAF 122
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
1-87 1.49e-33

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 113.63  E-value: 1.49e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21666649     1 IMQILTGLFLAMHYTPDTTMAFSSVAHICRDVNYGWIIRYLHANGASMFFICLYAHIGRGLYYG--SYIFQETWNIGVIL 78
Cdd:pfam00033  25 AVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIFRGLYYGgfSYPRELTWVIGVIL 104


                  ....*....
gi 21666649    79 LFMVMATAF 87
Cdd:pfam00033 105 LVLTMSTAF 113
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-87 2.09e-33

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 117.97  E-value: 2.09e-33
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21666649   1 IMQILTGLFLAMHYTPDTTMAFSSVAHICRDVNYGWIIRYLHANGASMFFICLYAHIGRGLYYGSYIF--QETWNIGVIL 78
Cdd:COG1290  51 VIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGAYKKprELNWIIGVLL 130


                ....*....
gi 21666649  79 LFMVMATAF 87
Cdd:COG1290 131 LLLTMAEAF 139
 
Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
 1-87 1.30e-61

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 191.00  E-value: 1.30e-61
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21666649    1 IMQILTGLFLAMHYTPDTTMAFSSVAHICRDVNYGWIIRYLHANGASMFFICLYAHIGRGLYYGSYIFQETWNIGVILLF 80
Cdd:MTH00100  42 ILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLF 121


                 ....*..
gi 21666649   81 MVMATAF 87
Cdd:MTH00100 122 TVMATAF 128
CYTB MTH00074
cytochrome b; Provisional
 1-87 3.26e-57

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 179.88  E-value: 3.26e-57
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21666649    1 IMQILTGLFLAMHYTPDTTMAFSSVAHICRDVNYGWIIRYLHANGASMFFICLYAHIGRGLYYGSYIFQETWNIGVILLF 80
Cdd:MTH00074  43 IAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMRNIHANGASFFFICIYLHIGRGLYYGSYMYKETWNIGVILLF 122


                 ....*..
gi 21666649   81 MVMATAF 87
Cdd:MTH00074 123 LVMATAF 129
CYTB MTH00119
cytochrome b; Provisional
 1-87 5.26e-57

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 179.33  E-value: 5.26e-57
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21666649    1 IMQILTGLFLAMHYTPDTTMAFSSVAHICRDVNYGWIIRYLHANGASMFFICLYAHIGRGLYYGSYIFQETWNIGVILLF 80
Cdd:MTH00119  43 ITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLL 122


                 ....*..
gi 21666649   81 MVMATAF 87
Cdd:MTH00119 123 LLMATAF 129
CYTB MTH00131
cytochrome b; Provisional
 1-87 4.70e-56

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 176.77  E-value: 4.70e-56
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21666649    1 IMQILTGLFLAMHYTPDTTMAFSSVAHICRDVNYGWIIRYLHANGASMFFICLYAHIGRGLYYGSYIFQETWNIGVILLF 80
Cdd:MTH00131  42 ITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLL 121


                 ....*..
gi 21666649   81 MVMATAF 87
Cdd:MTH00131 122 LVMMTAF 128
CYTB MTH00191
cytochrome b; Provisional
 1-87 5.96e-54

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 170.87  E-value: 5.96e-54
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21666649    1 IMQILTGLFLAMHYTPDTTMAFSSVAHICRDVNYGWIIRYLHANGASMFFICLYAHIGRGLYYGSYIFQETWNIGVILLF 80
Cdd:MTH00191  39 IIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIHANGASFFFICIYLHIGRGLYYGSYLNKETWNVGVILLI 118


                 ....*..
gi 21666649   81 MVMATAF 87
Cdd:MTH00191 119 LSMATAF 125
CYTB MTH00156
cytochrome b; Provisional
 1-87 4.17e-53

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 168.42  E-value: 4.17e-53
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21666649    1 IMQILTGLFLAMHYTPDTTMAFSSVAHICRDVNYGWIIRYLHANGASMFFICLYAHIGRGLYYGSYIFQETWNIGVILLF 80
Cdd:MTH00156  32 MIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFFFICIYLHIGRGIYYGSYKLKHTWMSGVIILF 111


                 ....*..
gi 21666649   81 MVMATAF 87
Cdd:MTH00156 112 LVMATAF 118
CYTB MTH00145
cytochrome b; Provisional
 1-87 1.42e-51

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 165.08  E-value: 1.42e-51
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21666649    1 IMQILTGLFLAMHYTPDTTMAFSSVAHICRDVNYGWIIRYLHANGASMFFICLYAHIGRGLYYGSYIFQETWNIGVILLF 80
Cdd:MTH00145  43 GIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLLRSLHANGASFFFICIYLHIGRGLYYGSYLMQHTWNIGVTLLL 122


                 ....*..
gi 21666649   81 MVMATAF 87
Cdd:MTH00145 123 LSMGTAF 129
CYTB MTH00034
cytochrome b; Validated
 1-87 6.06e-51

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 163.72  E-value: 6.06e-51
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21666649    1 IMQILTGLFLAMHYTPDTTMAFSSVAHICRDVNYGWIIRYLHANGASMFFICLYAHIGRGLYYGSYIFQETWNIGVILLF 80
Cdd:MTH00034  42 IIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIHANGASLFFICLYFHIGRGLYYGSYVNIETWNIGVILFL 121


                 ....*..
gi 21666649   81 MVMATAF 87
Cdd:MTH00034 122 LTMLTAF 128
CYTB MTH00016
cytochrome b; Validated
 1-87 9.44e-48

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 155.22  E-value: 9.44e-48
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21666649    1 IMQILTGLFLAMHYTPDTTMAFSSVAHICRDVNYGWIIRYLHANGASMFFICLYAHIGRGLYYGSYIFQETWNIGVILLF 80
Cdd:MTH00016  43 VIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLLRNLHANGASFFFICLYLHIGRGIYYGSYFLMETWNIGVILLL 122


                 ....*..
gi 21666649   81 MVMATAF 87
Cdd:MTH00016 123 LTMATAF 129
CYTB MTH00224
cytochrome b; Provisional
 1-87 5.55e-41

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 137.75  E-value: 5.55e-41
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21666649    1 IMQILTGLFLAMHYTPDTTMAFSSVAHICRDVNYGWIIRYLHANGASMFFICLYAHIGRGLYYGSYIFQETWNIGVILLF 80
Cdd:MTH00224  43 VIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLLRSIHANGASMFFLFIYLHVGRGLYYGSFNLSETWNIGVILFI 122


                 ....*..
gi 21666649   81 MVMATAF 87
Cdd:MTH00224 123 LTMATAF 129
CYTB MTH00022
cytochrome b; Validated
 1-87 1.81e-39

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 133.67  E-value: 1.81e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21666649    1 IMQILTGLFLAMHYTPDTTMAFSSVAHICRDVNYGWIIRYLHANGASMFFICLYAHIGRGLYYGSYIFQETWNIGVILLF 80
Cdd:MTH00022  41 VIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYLHANGASLFFLCLYIHIGRGLYYGGYLKFHVWNVGVVIFL 120


                 ....*..
gi 21666649   81 MVMATAF 87
Cdd:MTH00022 121 LTMATAF 127
CYTB MTH00053
cytochrome b; Provisional
 1-87 3.11e-39

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 133.29  E-value: 3.11e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21666649    1 IMQILTGLFLAMHYTPDTTMAFSSVAHICRDVNYGWIIRYLHANGASMFFICLYAHIGRGLYYGSYIFQETWNIGVILLF 80
Cdd:MTH00053  43 IIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFILRYLHANGASMFFLCVYFHIGRGIYYGSYTKIIVWNVGVLIFL 122


                 ....*..
gi 21666649   81 MVMATAF 87
Cdd:MTH00053 123 LMILTAF 129
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-87 2.03e-34

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 116.31  E-value: 2.03e-34
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21666649   1 IMQILTGLFLAMHYTPDTTMAFSSVAHICRDVNYGWIIRYLHANGASMFFICLYAHIGRGLYYGSYI--FQETWNIGVIL 78
Cdd:cd00284  34 VIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYYGSYKkpRELTWVIGVIL 113


                ....*....
gi 21666649  79 LFMVMATAF 87
Cdd:cd00284 114 LLLTMATAF 122
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
1-87 1.49e-33

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 113.63  E-value: 1.49e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21666649     1 IMQILTGLFLAMHYTPDTTMAFSSVAHICRDVNYGWIIRYLHANGASMFFICLYAHIGRGLYYG--SYIFQETWNIGVIL 78
Cdd:pfam00033  25 AVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIFRGLYYGgfSYPRELTWVIGVIL 104


                  ....*....
gi 21666649    79 LFMVMATAF 87
Cdd:pfam00033 105 LVLTMSTAF 113
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-87 2.09e-33

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 117.97  E-value: 2.09e-33
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21666649   1 IMQILTGLFLAMHYTPDTTMAFSSVAHICRDVNYGWIIRYLHANGASMFFICLYAHIGRGLYYGSYIF--QETWNIGVIL 78
Cdd:COG1290  51 VIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGAYKKprELNWIIGVLL 130


                ....*....
gi 21666649  79 LFMVMATAF 87
Cdd:COG1290 131 LLLTMAEAF 139
CYTB MTH00033
cytochrome b; Provisional
 2-87 3.64e-32

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 114.65  E-value: 3.64e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21666649    2 MQILTGLFLAMHYTPDTTMAFSSVAHICRDVNYGWIIRYLHANGASMFFICLYAHIGRGLYYGSYIFQETWNIGVILLFM 81
Cdd:MTH00033  40 IQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASLFFICVYCHIGRGLYYGGYSRVLTWIVGVLIFFI 119


                 ....*.
gi 21666649   82 VMATAF 87
Cdd:MTH00033 120 MMLTAF 125
CYTB MTH00086
cytochrome b; Provisional
 1-87 8.94e-25

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 94.62  E-value: 8.94e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21666649    1 IMQILTGLFLAMHYTPDTTMAFSSVAHICRDVNYGWIIRYLHANGASMFFICLYAHIGRGLYYGSYIFQETWNIGVILLF 80
Cdd:MTH00086  31 VFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFFIFLYLHIFKGLFMMSYRLKKVWISGLTIYL 110


                 ....*..
gi 21666649   81 MVMATAF 87
Cdd:MTH00086 111 LVMMEAF 117
CYTB MTH00046
cytochrome b; Validated
 1-87 1.04e-18

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 78.10  E-value: 1.04e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21666649    1 IMQILTGLFLAMHYTPDTTMAFSSVAHICRDVNYGWIIRYLHANGASMFFICLYAHIGRGLYYGSYIFQETWNIGVILLF 80
Cdd:MTH00046  33 VIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNVLFILLFIHMGRALYYSSYSKKGVWNVGFILYL 112


                 ....*..
gi 21666649   81 MVMATAF 87
Cdd:MTH00046 113 LVMVEAF 119
PRK03735 PRK03735
cytochrome b6; Provisional
 1-87 4.16e-16

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 69.36  E-value: 4.16e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21666649    1 IMQILTGLFLAMHYTPDTTMAFSSVAHICRDVNYGWIIRYLHANGASMFFICLYAHIGRGLYYGSYI--FQETWNIGVIL 78
Cdd:PRK03735  53 VIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKkpRELNWVVGVLI 132


                 ....*....
gi 21666649   79 LFMVMATAF 87
Cdd:PRK03735 133 FFVTVGLGF 141
petB CHL00070
cytochrome b6
 1-78 3.33e-11

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 56.27  E-value: 3.33e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21666649    1 IMQILTGLFLAMHYTPDTTMAFSSVAHICRDVNYGWIIRYLHANGASMFFICLYAHIGRGLYYGSYI--FQETWNIGVIL 78
Cdd:CHL00070  45 LVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKkpRELTWVTGVVL 124
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
47-87 2.31e-05

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 40.30  E-value: 2.31e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|...
gi 21666649    47 SMFFICLYAHIGRGLYYGSYIF--QETWNIGVILLFMVMATAF 87
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKprELNWIIGVLLLLLTLGEGF 43
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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