NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|21666647|gb|AAM73786|]
View 

cytochrome b, partial (mitochondrion) [Mesoplodon perrini]

Protein Classification

cytochrome b( domain architecture ID 999999)

cytochrome b is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex) that is part of the mitochondrial respiratory chain; contributes to the generation of a proton gradient across the mitochondrial membrane that is then used for ATP synthesis

CATH:  1.20.810.10
Gene Ontology:  GO:0009055|GO:0046872|GO:0022904|GO:0005743|GO:0020037
PubMed:  2509716|8329437
SCOP:  4002208

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
CYTB super family cl31797
cytochrome b; Provisional
 1-96 1.49e-67

cytochrome b; Provisional


The actual alignment was detected with superfamily member MTH00100:

Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 206.80  E-value: 1.49e-67
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21666647    1 FGSLLGLCLIMQILTGLFLAMHYTPDTTMAFSSVAHICRDVNYGWIIRYLHANGASMFFICLYAHIGRGLYYGSYIFQKT 80
Cdd:MTH00100  33 FGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGASMFFICLFLHVGRGLYYGSYLFLET 112

                         90
                 ....*....|....*.
gi 21666647   81 WNIGVILLFMVMATAF 96
Cdd:MTH00100 113 WNIGIILLFTVMATAF 128
 
Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
 1-96 1.49e-67

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 206.80  E-value: 1.49e-67
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21666647    1 FGSLLGLCLIMQILTGLFLAMHYTPDTTMAFSSVAHICRDVNYGWIIRYLHANGASMFFICLYAHIGRGLYYGSYIFQKT 80
Cdd:MTH00100  33 FGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGASMFFICLFLHVGRGLYYGSYLFLET 112

                         90
                 ....*....|....*.
gi 21666647   81 WNIGVILLFMVMATAF 96
Cdd:MTH00100 113 WNIGIILLFTVMATAF 128
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-96 9.54e-39

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 127.87  E-value: 9.54e-39
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21666647   1 FGSLLGLCLIMQILTGLFLAMHYTPDTTMAFSSVAHICRDVNYGWIIRYLHANGASMFFICLYAHIGRGLYYGSYI--FQ 78
Cdd:cd00284  25 FGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYYGSYKkpRE 104

                        90
                ....*....|....*...
gi 21666647  79 KTWNIGVILLFMVMATAF 96
Cdd:cd00284 105 LTWVIGVILLLLTMATAF 122
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-96 9.99e-38

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 129.91  E-value: 9.99e-38
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21666647   1 FGSLLGLCLIMQILTGLFLAMHYTPDTTMAFSSVAHICRDVNYGWIIRYLHANGASMFFICLYAHIGRGLYYGSYifQK- 79
Cdd:COG1290  42 FGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGAY--KKp 119

                        90       100
                ....*....|....*....|
gi 21666647  80 ---TWNIGVILLFMVMATAF 96
Cdd:COG1290 120 relNWIIGVLLLLLTMAEAF 139
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
1-96 2.62e-37

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 123.65  E-value: 2.62e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21666647     1 FGSLLGLCLIMQILTGLFLAMHYTPDTTMAFSSVAHICRDVNYGWIIRYLHANGASMFFICLYAHIGRGLYYG--SYIFQ 78
Cdd:pfam00033  16 FGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIFRGLYYGgfSYPRE 95

                          90
                  ....*....|....*...
gi 21666647    79 KTWNIGVILLFMVMATAF 96
Cdd:pfam00033  96 LTWVIGVILLVLTMSTAF 113
 
Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
 1-96 1.49e-67

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 206.80  E-value: 1.49e-67
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21666647    1 FGSLLGLCLIMQILTGLFLAMHYTPDTTMAFSSVAHICRDVNYGWIIRYLHANGASMFFICLYAHIGRGLYYGSYIFQKT 80
Cdd:MTH00100  33 FGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGASMFFICLFLHVGRGLYYGSYLFLET 112

                         90
                 ....*....|....*.
gi 21666647   81 WNIGVILLFMVMATAF 96
Cdd:MTH00100 113 WNIGIILLFTVMATAF 128
CYTB MTH00119
cytochrome b; Provisional
 1-96 1.50e-63

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 196.28  E-value: 1.50e-63
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21666647    1 FGSLLGLCLIMQILTGLFLAMHYTPDTTMAFSSVAHICRDVNYGWIIRYLHANGASMFFICLYAHIGRGLYYGSYIFQKT 80
Cdd:MTH00119  34 FGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLYKET 113

                         90
                 ....*....|....*.
gi 21666647   81 WNIGVILLFMVMATAF 96
Cdd:MTH00119 114 WNTGVILLLLLMATAF 129
CYTB MTH00074
cytochrome b; Provisional
 1-96 5.01e-63

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 194.90  E-value: 5.01e-63
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21666647    1 FGSLLGLCLIMQILTGLFLAMHYTPDTTMAFSSVAHICRDVNYGWIIRYLHANGASMFFICLYAHIGRGLYYGSYIFQKT 80
Cdd:MTH00074  34 FGSLLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMRNIHANGASFFFICIYLHIGRGLYYGSYMYKET 113

                         90
                 ....*....|....*.
gi 21666647   81 WNIGVILLFMVMATAF 96
Cdd:MTH00074 114 WNIGVILLFLVMATAF 129
CYTB MTH00131
cytochrome b; Provisional
 1-96 2.70e-62

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 193.33  E-value: 2.70e-62
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21666647    1 FGSLLGLCLIMQILTGLFLAMHYTPDTTMAFSSVAHICRDVNYGWIIRYLHANGASMFFICLYAHIGRGLYYGSYIFQKT 80
Cdd:MTH00131  33 FGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLYKET 112

                         90
                 ....*....|....*.
gi 21666647   81 WNIGVILLFMVMATAF 96
Cdd:MTH00131 113 WNIGVVLLLLVMMTAF 128
CYTB MTH00156
cytochrome b; Provisional
 1-96 1.65e-60

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 187.68  E-value: 1.65e-60
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21666647    1 FGSLLGLCLIMQILTGLFLAMHYTPDTTMAFSSVAHICRDVNYGWIIRYLHANGASMFFICLYAHIGRGLYYGSYIFQKT 80
Cdd:MTH00156  23 FGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFFFICIYLHIGRGIYYGSYKLKHT 102

                         90
                 ....*....|....*.
gi 21666647   81 WNIGVILLFMVMATAF 96
Cdd:MTH00156 103 WMSGVIILFLVMATAF 118
CYTB MTH00191
cytochrome b; Provisional
 1-96 7.17e-60

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 186.66  E-value: 7.17e-60
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21666647    1 FGSLLGLCLIMQILTGLFLAMHYTPDTTMAFSSVAHICRDVNYGWIIRYLHANGASMFFICLYAHIGRGLYYGSYIFQKT 80
Cdd:MTH00191  30 FGSLLGLCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIHANGASFFFICIYLHIGRGLYYGSYLNKET 109

                         90
                 ....*....|....*.
gi 21666647   81 WNIGVILLFMVMATAF 96
Cdd:MTH00191 110 WNVGVILLILSMATAF 125
CYTB MTH00145
cytochrome b; Provisional
 1-96 6.12e-58

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 182.03  E-value: 6.12e-58
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21666647    1 FGSLLGLCLIMQILTGLFLAMHYTPDTTMAFSSVAHICRDVNYGWIIRYLHANGASMFFICLYAHIGRGLYYGSYIFQKT 80
Cdd:MTH00145  34 FGSLLGLCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLLRSLHANGASFFFICIYLHIGRGLYYGSYLMQHT 113

                         90
                 ....*....|....*.
gi 21666647   81 WNIGVILLFMVMATAF 96
Cdd:MTH00145 114 WNIGVTLLLLSMGTAF 129
CYTB MTH00034
cytochrome b; Validated
 1-96 8.05e-57

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 179.13  E-value: 8.05e-57
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21666647    1 FGSLLGLCLIMQILTGLFLAMHYTPDTTMAFSSVAHICRDVNYGWIIRYLHANGASMFFICLYAHIGRGLYYGSYIFQKT 80
Cdd:MTH00034  33 FGSLLGLCLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIHANGASLFFICLYFHIGRGLYYGSYVNIET 112

                         90
                 ....*....|....*.
gi 21666647   81 WNIGVILLFMVMATAF 96
Cdd:MTH00034 113 WNIGVILFLLTMLTAF 128
CYTB MTH00016
cytochrome b; Validated
 1-96 1.74e-53

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 170.63  E-value: 1.74e-53
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21666647    1 FGSLLGLCLIMQILTGLFLAMHYTPDTTMAFSSVAHICRDVNYGWIIRYLHANGASMFFICLYAHIGRGLYYGSYIFQKT 80
Cdd:MTH00016  34 FGSLLGLCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLLRNLHANGASFFFICLYLHIGRGIYYGSYFLMET 113

                         90
                 ....*....|....*.
gi 21666647   81 WNIGVILLFMVMATAF 96
Cdd:MTH00016 114 WNIGVILLLLTMATAF 129
CYTB MTH00224
cytochrome b; Provisional
 1-96 1.66e-46

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 152.38  E-value: 1.66e-46
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21666647    1 FGSLLGLCLIMQILTGLFLAMHYTPDTTMAFSSVAHICRDVNYGWIIRYLHANGASMFFICLYAHIGRGLYYGSYIFQKT 80
Cdd:MTH00224  34 YGSLLGLCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLLRSIHANGASMFFLFIYLHVGRGLYYGSFNLSET 113

                         90
                 ....*....|....*.
gi 21666647   81 WNIGVILLFMVMATAF 96
Cdd:MTH00224 114 WNIGVILFILTMATAF 129
CYTB MTH00022
cytochrome b; Validated
 1-96 3.49e-45

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 149.08  E-value: 3.49e-45
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21666647    1 FGSLLGLCLIMQILTGLFLAMHYTPDTTMAFSSVAHICRDVNYGWIIRYLHANGASMFFICLYAHIGRGLYYGSYIFQKT 80
Cdd:MTH00022  32 FGSLLGLCLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYLHANGASLFFLCLYIHIGRGLYYGGYLKFHV 111

                         90
                 ....*....|....*.
gi 21666647   81 WNIGVILLFMVMATAF 96
Cdd:MTH00022 112 WNVGVVIFLLTMATAF 127
CYTB MTH00053
cytochrome b; Provisional
 1-96 3.62e-45

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 149.09  E-value: 3.62e-45
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21666647    1 FGSLLGLCLIMQILTGLFLAMHYTPDTTMAFSSVAHICRDVNYGWIIRYLHANGASMFFICLYAHIGRGLYYGSYIFQKT 80
Cdd:MTH00053  34 FGSLLGFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFILRYLHANGASMFFLCVYFHIGRGIYYGSYTKIIV 113

                         90
                 ....*....|....*.
gi 21666647   81 WNIGVILLFMVMATAF 96
Cdd:MTH00053 114 WNVGVLIFLLMILTAF 129
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-96 9.54e-39

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 127.87  E-value: 9.54e-39
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21666647   1 FGSLLGLCLIMQILTGLFLAMHYTPDTTMAFSSVAHICRDVNYGWIIRYLHANGASMFFICLYAHIGRGLYYGSYI--FQ 78
Cdd:cd00284  25 FGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYYGSYKkpRE 104

                        90
                ....*....|....*...
gi 21666647  79 KTWNIGVILLFMVMATAF 96
Cdd:cd00284 105 LTWVIGVILLLLTMATAF 122
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-96 9.99e-38

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 129.91  E-value: 9.99e-38
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21666647   1 FGSLLGLCLIMQILTGLFLAMHYTPDTTMAFSSVAHICRDVNYGWIIRYLHANGASMFFICLYAHIGRGLYYGSYifQK- 79
Cdd:COG1290  42 FGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGAY--KKp 119

                        90       100
                ....*....|....*....|
gi 21666647  80 ---TWNIGVILLFMVMATAF 96
Cdd:COG1290 120 relNWIIGVLLLLLTMAEAF 139
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
1-96 2.62e-37

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 123.65  E-value: 2.62e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21666647     1 FGSLLGLCLIMQILTGLFLAMHYTPDTTMAFSSVAHICRDVNYGWIIRYLHANGASMFFICLYAHIGRGLYYG--SYIFQ 78
Cdd:pfam00033  16 FGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIFRGLYYGgfSYPRE 95

                          90
                  ....*....|....*...
gi 21666647    79 KTWNIGVILLFMVMATAF 96
Cdd:pfam00033  96 LTWVIGVILLVLTMSTAF 113
CYTB MTH00033
cytochrome b; Provisional
 1-96 4.28e-36

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 125.44  E-value: 4.28e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21666647    1 FGSLLGLCLIMQILTGLFLAMHYTPDTTMAFSSVAHICRDVNYGWIIRYLHANGASMFFICLYAHIGRGLYYGSYIFQKT 80
Cdd:MTH00033  30 FGSLLCLCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASLFFICVYCHIGRGLYYGGYSRVLT 109

                         90
                 ....*....|....*.
gi 21666647   81 WNIGVILLFMVMATAF 96
Cdd:MTH00033 110 WIVGVLIFFIMMLTAF 125
CYTB MTH00086
cytochrome b; Provisional
 1-96 6.92e-29

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 105.79  E-value: 6.92e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21666647    1 FGSLLGLCLIMQILTGLFLAMHYTPDTTMAFSSVAHICRDVNYGWIIRYLHANGASMFFICLYAHIGRGLYYGSYIFQKT 80
Cdd:MTH00086  22 FGSMLGMVLVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFFIFLYLHIFKGLFMMSYRLKKV 101

                         90
                 ....*....|....*.
gi 21666647   81 WNIGVILLFMVMATAF 96
Cdd:MTH00086 102 WISGLTIYLLVMMEAF 117
CYTB MTH00046
cytochrome b; Validated
 2-96 3.83e-19

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 79.64  E-value: 3.83e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21666647    2 GSLLGLCLIMQILTGLFLAMHYTPDTTMAFSSVAHICRDVNYGWIIRYLHANGASMFFICLYAHIGRGLYYGSYIFQKTW 81
Cdd:MTH00046  25 GFVLSVFMVIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNVLFILLFIHMGRALYYSSYSKKGVW 104

                         90
                 ....*....|....*
gi 21666647   82 NIGVILLFMVMATAF 96
Cdd:MTH00046 105 NVGFILYLLVMVEAF 119
PRK03735 PRK03735
cytochrome b6; Provisional
 1-96 2.21e-18

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 75.90  E-value: 2.21e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21666647    1 FGSLLGLCLIMQILTGLFLAMHYTPDTTMAFSSVAHICRDVNYGWIIRYLHANGASMFFICLYAHIGRGLYYGSYIFQK- 79
Cdd:PRK03735  44 FGGLTFFCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKPRe 123

                         90
                 ....*....|....*...
gi 21666647   80 -TWNIGVILLFMVMATAF 96
Cdd:PRK03735 124 lNWVVGVLIFFVTVGLGF 141
petB CHL00070
cytochrome b6
 1-87 2.26e-13

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 62.43  E-value: 2.26e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21666647    1 FGSLLGLCLIMQILTGLFLAMHYTPDTTMAFSSVAHICRDVNYGWIIRYLHANGASMFFICLYAHIGRGLYYGSyiFQK- 79
Cdd:CHL00070  36 LGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYLTGG--FKKp 113

                         90
                 ....*....|.
gi 21666647   80 ---TWNIGVIL 87
Cdd:CHL00070 114 relTWVTGVVL 124
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
56-96 4.35e-05

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 39.53  E-value: 4.35e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|...
gi 21666647    56 SMFFICLYAHIGRGLYYGSYIF--QKTWNIGVILLFMVMATAF 96
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKprELNWIIGVLLLLLTLGEGF 43
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH