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Conserved domains on  [gi|215765736|dbj|BAG87433|]
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unnamed protein product [Oryza sativa Japonica Group]

Protein Classification

ATP synthase subunit e( domain architecture ID 10650)

ATP synthase subunit e is a component of the Fo complex in the mitochondrial membrane ATP synthase (F1Fo ATP synthase or Complex V), located with subunit a in the membrane

Gene Ontology:  GO:0015078|GO:0015986|GO:0000276|GO:0005743
PubMed:  25667968|30888962|15701797
SCOP:  4001544

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ATP-synt_E super family cl05315
ATP synthase E chain; This family consists of several ATP synthase E chain sequences which are ...
 11-52 5.14e-03

ATP synthase E chain; This family consists of several ATP synthase E chain sequences which are components of the CF(0) subunit.


The actual alignment was detected with superfamily member pfam05680:

Pssm-ID: 368558  Cd Length: 83  Bit Score: 31.31  E-value: 5.14e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|..
gi 215765736  11 VSTLALVARASALGVGVVYGAVKLSILkatKPNKKEAANAHH 52
Cdd:pfam05680  6 VSPLINVLRWSALAAGVVYGAKHQRSL---KKKEEKIREYEA 44
 
Name Accession Description Interval E-value
ATP-synt_E pfam05680
ATP synthase E chain; This family consists of several ATP synthase E chain sequences which are ...
 11-52 5.14e-03

ATP synthase E chain; This family consists of several ATP synthase E chain sequences which are components of the CF(0) subunit.


Pssm-ID: 368558  Cd Length: 83  Bit Score: 31.31  E-value: 5.14e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|..
gi 215765736  11 VSTLALVARASALGVGVVYGAVKLSILkatKPNKKEAANAHH 52
Cdd:pfam05680  6 VSPLINVLRWSALAAGVVYGAKHQRSL---KKKEEKIREYEA 44
 
Name Accession Description Interval E-value
ATP-synt_E pfam05680
ATP synthase E chain; This family consists of several ATP synthase E chain sequences which are ...
 11-52 5.14e-03

ATP synthase E chain; This family consists of several ATP synthase E chain sequences which are components of the CF(0) subunit.


Pssm-ID: 368558  Cd Length: 83  Bit Score: 31.31  E-value: 5.14e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|..
gi 215765736  11 VSTLALVARASALGVGVVYGAVKLSILkatKPNKKEAANAHH 52
Cdd:pfam05680  6 VSPLINVLRWSALAAGVVYGAKHQRSL---KKKEEKIREYEA 44
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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