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Conserved domains on  [gi|215740423|dbj|BAG97079|]
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unnamed protein product [Oryza sativa Japonica Group]

Protein Classification

zf-RanBP and ZnF_RBZ domain-containing protein( domain architecture ID 10457893)

zf-RanBP and ZnF_RBZ domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
zf-RanBP pfam00641
Zn-finger in Ran binding protein and others;
242-272 8.59e-06

Zn-finger in Ran binding protein and others;


:

Pssm-ID: 395516 [Multi-domain]  Cd Length: 30  Bit Score: 41.95  E-value: 8.59e-06
                          10        20        30
                  ....*....|....*....|....*....|.
gi 215740423  242 PEGSWKCEKCNNINYPFRTKCNRpsCEAEKP 272
Cdd:pfam00641   1 REGDWDCSKCLVQNFATSTKCVA--CQAPKP 29
ZnF_RBZ smart00547
Zinc finger domain; Zinc finger domain in Ran-binding proteins (RanBPs), and other proteins. ...
 196-222 2.08e-04

Zinc finger domain; Zinc finger domain in Ran-binding proteins (RanBPs), and other proteins. In RanBPs, this domain binds RanGDP.


:

Pssm-ID: 197784 [Multi-domain]  Cd Length: 25  Bit Score: 38.07  E-value: 2.08e-04
                           10        20
                   ....*....|....*....|....*..
gi 215740423   196 NDWKCPNCNNINFAFRTVCNMrkCNTP 222
Cdd:smart00547   1 GDWECPACTFLNFASRSKCFA--CGAP 25
zf-RanBP pfam00641
Zn-finger in Ran binding protein and others;
23-45 2.87e-03

Zn-finger in Ran binding protein and others;


:

Pssm-ID: 395516 [Multi-domain]  Cd Length: 30  Bit Score: 35.02  E-value: 2.87e-03
                          10        20
                  ....*....|....*....|...
gi 215740423   23 REDDWVCPSCQNVNFAFRTTCNM 45
Cdd:pfam00641   1 REGDWDCSKCLVQNFATSTKCVA 23
 
Name Accession Description Interval E-value
zf-RanBP pfam00641
Zn-finger in Ran binding protein and others;
242-272 8.59e-06

Zn-finger in Ran binding protein and others;


Pssm-ID: 395516 [Multi-domain]  Cd Length: 30  Bit Score: 41.95  E-value: 8.59e-06
                          10        20        30
                  ....*....|....*....|....*....|.
gi 215740423  242 PEGSWKCEKCNNINYPFRTKCNRpsCEAEKP 272
Cdd:pfam00641   1 REGDWDCSKCLVQNFATSTKCVA--CQAPKP 29
ZnF_RBZ smart00547
Zinc finger domain; Zinc finger domain in Ran-binding proteins (RanBPs), and other proteins. ...
 196-222 2.08e-04

Zinc finger domain; Zinc finger domain in Ran-binding proteins (RanBPs), and other proteins. In RanBPs, this domain binds RanGDP.


Pssm-ID: 197784 [Multi-domain]  Cd Length: 25  Bit Score: 38.07  E-value: 2.08e-04
                           10        20
                   ....*....|....*....|....*..
gi 215740423   196 NDWKCPNCNNINFAFRTVCNMrkCNTP 222
Cdd:smart00547   1 GDWECPACTFLNFASRSKCFA--CGAP 25
zf-RanBP pfam00641
Zn-finger in Ran binding protein and others;
194-224 4.66e-04

Zn-finger in Ran binding protein and others;


Pssm-ID: 395516 [Multi-domain]  Cd Length: 30  Bit Score: 36.95  E-value: 4.66e-04
                          10        20        30
                  ....*....|....*....|....*....|.
gi 215740423  194 RDNDWKCPNCNNINFAFRTVCNMrkCNTPRP 224
Cdd:pfam00641   1 REGDWDCSKCLVQNFATSTKCVA--CQAPKP 29
ZnF_RBZ smart00547
Zinc finger domain; Zinc finger domain in Ran-binding proteins (RanBPs), and other proteins. ...
 244-269 1.03e-03

Zinc finger domain; Zinc finger domain in Ran-binding proteins (RanBPs), and other proteins. In RanBPs, this domain binds RanGDP.


Pssm-ID: 197784 [Multi-domain]  Cd Length: 25  Bit Score: 36.14  E-value: 1.03e-03
                           10        20
                   ....*....|....*....|....*.
gi 215740423   244 GSWKCEKCNNINYPFRTKCNRpsCEA 269
Cdd:smart00547   1 GDWECPACTFLNFASRSKCFA--CGA 24
zf-RanBP pfam00641
Zn-finger in Ran binding protein and others;
23-45 2.87e-03

Zn-finger in Ran binding protein and others;


Pssm-ID: 395516 [Multi-domain]  Cd Length: 30  Bit Score: 35.02  E-value: 2.87e-03
                          10        20
                  ....*....|....*....|...
gi 215740423   23 REDDWVCPSCQNVNFAFRTTCNM 45
Cdd:pfam00641   1 REGDWDCSKCLVQNFATSTKCVA 23
ZnF_RBZ smart00547
Zinc finger domain; Zinc finger domain in Ran-binding proteins (RanBPs), and other proteins. ...
 25-51 3.27e-03

Zinc finger domain; Zinc finger domain in Ran-binding proteins (RanBPs), and other proteins. In RanBPs, this domain binds RanGDP.


Pssm-ID: 197784 [Multi-domain]  Cd Length: 25  Bit Score: 34.60  E-value: 3.27e-03
                           10        20
                   ....*....|....*....|....*..
gi 215740423    25 DDWVCPSCQNVNFAFRTTCNMrnCNQS 51
Cdd:smart00547   1 GDWECPACTFLNFASRSKCFA--CGAP 25
 
Name Accession Description Interval E-value
zf-RanBP pfam00641
Zn-finger in Ran binding protein and others;
242-272 8.59e-06

Zn-finger in Ran binding protein and others;


Pssm-ID: 395516 [Multi-domain]  Cd Length: 30  Bit Score: 41.95  E-value: 8.59e-06
                          10        20        30
                  ....*....|....*....|....*....|.
gi 215740423  242 PEGSWKCEKCNNINYPFRTKCNRpsCEAEKP 272
Cdd:pfam00641   1 REGDWDCSKCLVQNFATSTKCVA--CQAPKP 29
ZnF_RBZ smart00547
Zinc finger domain; Zinc finger domain in Ran-binding proteins (RanBPs), and other proteins. ...
 196-222 2.08e-04

Zinc finger domain; Zinc finger domain in Ran-binding proteins (RanBPs), and other proteins. In RanBPs, this domain binds RanGDP.


Pssm-ID: 197784 [Multi-domain]  Cd Length: 25  Bit Score: 38.07  E-value: 2.08e-04
                           10        20
                   ....*....|....*....|....*..
gi 215740423   196 NDWKCPNCNNINFAFRTVCNMrkCNTP 222
Cdd:smart00547   1 GDWECPACTFLNFASRSKCFA--CGAP 25
zf-RanBP pfam00641
Zn-finger in Ran binding protein and others;
194-224 4.66e-04

Zn-finger in Ran binding protein and others;


Pssm-ID: 395516 [Multi-domain]  Cd Length: 30  Bit Score: 36.95  E-value: 4.66e-04
                          10        20        30
                  ....*....|....*....|....*....|.
gi 215740423  194 RDNDWKCPNCNNINFAFRTVCNMrkCNTPRP 224
Cdd:pfam00641   1 REGDWDCSKCLVQNFATSTKCVA--CQAPKP 29
ZnF_RBZ smart00547
Zinc finger domain; Zinc finger domain in Ran-binding proteins (RanBPs), and other proteins. ...
 244-269 1.03e-03

Zinc finger domain; Zinc finger domain in Ran-binding proteins (RanBPs), and other proteins. In RanBPs, this domain binds RanGDP.


Pssm-ID: 197784 [Multi-domain]  Cd Length: 25  Bit Score: 36.14  E-value: 1.03e-03
                           10        20
                   ....*....|....*....|....*.
gi 215740423   244 GSWKCEKCNNINYPFRTKCNRpsCEA 269
Cdd:smart00547   1 GDWECPACTFLNFASRSKCFA--CGA 24
zf-RanBP pfam00641
Zn-finger in Ran binding protein and others;
23-45 2.87e-03

Zn-finger in Ran binding protein and others;


Pssm-ID: 395516 [Multi-domain]  Cd Length: 30  Bit Score: 35.02  E-value: 2.87e-03
                          10        20
                  ....*....|....*....|...
gi 215740423   23 REDDWVCPSCQNVNFAFRTTCNM 45
Cdd:pfam00641   1 REGDWDCSKCLVQNFATSTKCVA 23
ZnF_RBZ smart00547
Zinc finger domain; Zinc finger domain in Ran-binding proteins (RanBPs), and other proteins. ...
 25-51 3.27e-03

Zinc finger domain; Zinc finger domain in Ran-binding proteins (RanBPs), and other proteins. In RanBPs, this domain binds RanGDP.


Pssm-ID: 197784 [Multi-domain]  Cd Length: 25  Bit Score: 34.60  E-value: 3.27e-03
                           10        20
                   ....*....|....*....|....*..
gi 215740423    25 DDWVCPSCQNVNFAFRTTCNMrnCNQS 51
Cdd:smart00547   1 GDWECPACTFLNFASRSKCFA--CGAP 25
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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