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Conserved domains on  [gi|215697097|dbj|BAG91091|]
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unnamed protein product [Oryza sativa Japonica Group]

Protein Classification

pentatricopeptide repeat-containing protein( domain architecture ID 1003726)

pentatricopeptide repeat (PPR)-containing protein may form anti-parallel alpha helices and bind single-stranded RNA in a sequence-specific and modular manner; similar to Arabidopsis pentatricopeptide repeat proteins that play constitutive, often essential roles in mitochondria and chloroplasts, probably via binding to organellar transcripts

Gene Ontology:  GO:0003723
PubMed:  23635770

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PLN03218 super family cl33664
maturation of RBCL 1; Provisional
 354-675 6.02e-20

maturation of RBCL 1; Provisional


The actual alignment was detected with superfamily member PLN03218:

Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 95.33  E-value: 6.02e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 215697097  354 SAKD---AWEFFQRMERKGVKWSLDICISLIKIfCDNGLKTEALI-IQSAMEKKGIASNTSMYNTLINAYCKANQIEEAE 429
Cdd:PLN03218  449 SSQDidgALRVLRLVQEAGLKADCKLYTTLIST-CAKSGKVDAMFeVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAF 527

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 215697097  430 GVFVEMKEKGLSATAMTYNILMGAYCRRLQPEVVESLLLEM--QDLGLRPNARSYNFLIRVYGQQKKMsEKAEDAFLRMK 507
Cdd:PLN03218  528 GAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMkaETHPIDPDHITVGALMKACANAGQV-DRAKEVYQMIH 606

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 215697097  508 TDGIMPTSSTYTSLLCAYAVNGLHEKAYLTYVDMKREGLKPSLETYTALIDMFRRAGDTEKLMETWRSMINEKVPGTRVI 587
Cdd:PLN03218  607 EYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVS 686

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 215697097  588 FHMVLDGLAKHGLYVQATDVIYEFRRAGLQPTVMTYNILMNAFARGGQHYKLPQLLKEMAAMELKPDSVTYSTMIYAYAR 667
Cdd:PLN03218  687 YSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASER 766


                  ....*...
gi 215697097  668 VRDFSRAF 675
Cdd:PLN03218  767 KDDADVGL 774
PPR_2 super family cl38385
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 304-346 4.69e-06

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


The actual alignment was detected with superfamily member pfam13041:

Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 44.28  E-value: 4.69e-06
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|...
gi 215697097  304 VLYNAAMSGLAYRGRYDDTWKVFKLMEKKNIQPDHMTSLIMLD 346
Cdd:pfam13041   4 VTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILIN 46
PPR_2 super family cl38385
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 653-700 1.70e-05

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


The actual alignment was detected with superfamily member pfam13041:

Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 42.74  E-value: 1.70e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 215697097  653 PDSVTYSTMIYAYARVRDFSRAFYYHKLMVRSGQLPDVSSYKKLLNTL 700
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGL 48
 
Name Accession Description Interval E-value
PLN03218 PLN03218
maturation of RBCL 1; Provisional
 354-675 6.02e-20

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 95.33  E-value: 6.02e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 215697097  354 SAKD---AWEFFQRMERKGVKWSLDICISLIKIfCDNGLKTEALI-IQSAMEKKGIASNTSMYNTLINAYCKANQIEEAE 429
Cdd:PLN03218  449 SSQDidgALRVLRLVQEAGLKADCKLYTTLIST-CAKSGKVDAMFeVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAF 527

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 215697097  430 GVFVEMKEKGLSATAMTYNILMGAYCRRLQPEVVESLLLEM--QDLGLRPNARSYNFLIRVYGQQKKMsEKAEDAFLRMK 507
Cdd:PLN03218  528 GAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMkaETHPIDPDHITVGALMKACANAGQV-DRAKEVYQMIH 606

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 215697097  508 TDGIMPTSSTYTSLLCAYAVNGLHEKAYLTYVDMKREGLKPSLETYTALIDMFRRAGDTEKLMETWRSMINEKVPGTRVI 587
Cdd:PLN03218  607 EYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVS 686

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 215697097  588 FHMVLDGLAKHGLYVQATDVIYEFRRAGLQPTVMTYNILMNAFARGGQHYKLPQLLKEMAAMELKPDSVTYSTMIYAYAR 667
Cdd:PLN03218  687 YSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASER 766


                  ....*...
gi 215697097  668 VRDFSRAF 675
Cdd:PLN03218  767 KDDADVGL 774
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 408-456 5.20e-15

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 69.31  E-value: 5.20e-15
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 215697097  408 NTSMYNTLINAYCKANQIEEAEGVFVEMKEKGLSATAMTYNILMGAYCR 456
Cdd:pfam13041   2 DVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 411-444 2.90e-07

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 47.06  E-value: 2.90e-07
                          10        20        30
                  ....*....|....*....|....*....|....
gi 215697097  411 MYNTLINAYCKANQIEEAEGVFVEMKEKGLSATA 444
Cdd:TIGR00756   2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 304-346 4.69e-06

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 44.28  E-value: 4.69e-06
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|...
gi 215697097  304 VLYNAAMSGLAYRGRYDDTWKVFKLMEKKNIQPDHMTSLIMLD 346
Cdd:pfam13041   4 VTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILIN 46
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 653-700 1.70e-05

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 42.74  E-value: 1.70e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 215697097  653 PDSVTYSTMIYAYARVRDFSRAFYYHKLMVRSGQLPDVSSYKKLLNTL 700
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGL 48
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 304-337 9.65e-05

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 40.13  E-value: 9.65e-05
                          10        20        30
                  ....*....|....*....|....*....|....
gi 215697097  304 VLYNAAMSGLAYRGRYDDTWKVFKLMEKKNIQPD 337
Cdd:TIGR00756   1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
 
Name Accession Description Interval E-value
PLN03218 PLN03218
maturation of RBCL 1; Provisional
 354-675 6.02e-20

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 95.33  E-value: 6.02e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 215697097  354 SAKD---AWEFFQRMERKGVKWSLDICISLIKIfCDNGLKTEALI-IQSAMEKKGIASNTSMYNTLINAYCKANQIEEAE 429
Cdd:PLN03218  449 SSQDidgALRVLRLVQEAGLKADCKLYTTLIST-CAKSGKVDAMFeVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAF 527

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 215697097  430 GVFVEMKEKGLSATAMTYNILMGAYCRRLQPEVVESLLLEM--QDLGLRPNARSYNFLIRVYGQQKKMsEKAEDAFLRMK 507
Cdd:PLN03218  528 GAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMkaETHPIDPDHITVGALMKACANAGQV-DRAKEVYQMIH 606

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 215697097  508 TDGIMPTSSTYTSLLCAYAVNGLHEKAYLTYVDMKREGLKPSLETYTALIDMFRRAGDTEKLMETWRSMINEKVPGTRVI 587
Cdd:PLN03218  607 EYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVS 686

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 215697097  588 FHMVLDGLAKHGLYVQATDVIYEFRRAGLQPTVMTYNILMNAFARGGQHYKLPQLLKEMAAMELKPDSVTYSTMIYAYAR 667
Cdd:PLN03218  687 YSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASER 766


                  ....*...
gi 215697097  668 VRDFSRAF 675
Cdd:PLN03218  767 KDDADVGL 774
PLN03218 PLN03218
maturation of RBCL 1; Provisional
 292-697 4.29e-17

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 86.08  E-value: 4.29e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 215697097  292 ESLPPERRFSEavlYNAAMSGLAYRGRYDDTWKVFKLMEKKNiqpdhmtsliMLDVMN----------KSKTSAKDAWEF 361
Cdd:PLN03218  362 GGVSGKRKSPE---YIDAYNRLLRDGRIKDCIDLLEDMEKRG----------LLDMDKiyhakffkacKKQRAVKEAFRF 428

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 215697097  362 FQRMERKGVK---WSLDICISLIKIfcDNGLKTEALIiqsamEKKGIASNTSMYNTLINAYCKANQIEEAEGVFVEMKEK 438
Cdd:PLN03218  429 AKLIRNPTLStfnMLMSVCASSQDI--DGALRVLRLV-----QEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNA 501

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 215697097  439 GLSATAMTYNILMGAYCRRLQPEVVESLLLEMQDLGLRPNARSYNFLIRVYGQQKKMsEKAEDAFLRMK--TDGIMPTSS 516
Cdd:PLN03218  502 GVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAV-DRAFDVLAEMKaeTHPIDPDHI 580

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 215697097  517 TYTSLLCAYAVNGLHEKAYLTYVDMKREGLKPSLETYTALIDMFRRAGDTEKLMETWRSMINEKVPGTRVIFHMVLDGLA 596
Cdd:PLN03218  581 TVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAG 660

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 215697097  597 KHGLYVQATDVIYEFRRAGLQPTVMTYNILMNAFARGGQHYKLPQLLKEMAAMELKPDSVTYSTMIYAYARVRDFSRAFY 676
Cdd:PLN03218  661 HAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALE 740

                         410       420
                  ....*....|....*....|.
gi 215697097  677 YHKLMVRSGQLPDVSSYKKLL 697
Cdd:PLN03218  741 VLSEMKRLGLCPNTITYSILL 761
PLN03218 PLN03218
maturation of RBCL 1; Provisional
 304-523 4.84e-17

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 86.08  E-value: 4.84e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 215697097  304 VLYNAAMSGLAYRGRYDDTWKVFKLMEKKNIQ--PDHMTSLImldvmnkSKTSAKDAWEF----FQRMERKGVKWSLDIC 377
Cdd:PLN03218  580 ITVGALMKACANAGQVDRAKEVYQMIHEYNIKgtPEVYTIAV-------NSCSQKGDWDFalsiYDDMKKKGVKPDEVFF 652

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 215697097  378 ISLIKIFCDNGLKTEALIIQSAMEKKGIASNTSMYNTLINAYCKANQIEEAEGVFVEMKEKGLSATAMTYNILMGAYCRR 457
Cdd:PLN03218  653 SALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEG 732

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 215697097  458 LQPEVVESLLLEMQDLGLRPNARSYNFLIRVyGQQKKMSEKAEDAFLRMKTDGIMPTSSTYTSL--LC 523
Cdd:PLN03218  733 NQLPKALEVLSEMKRLGLCPNTITYSILLVA-SERKDDADVGLDLLSQAKEDGIKPNLVMCRCItgLC 799
PLN03218 PLN03218
maturation of RBCL 1; Provisional
 296-562 5.96e-16

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 82.23  E-value: 5.96e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 215697097  296 PERrfseaVLYNAAMSGLAYRGRYDDTWKVFKLM--EKKNIQPDHMT--SLImldvmnksKTSAK-----DAWEFFQRME 366
Cdd:PLN03218  540 PDR-----VVFNALISACGQSGAVDRAFDVLAEMkaETHPIDPDHITvgALM--------KACANagqvdRAKEVYQMIH 606

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 215697097  367 RKGVKWSLDiCISLIKIFCD-NGLKTEALIIQSAMEKKGIASNTSMYNTLINAYCKANQIEEAEGVFVEMKEKGLSATAM 445
Cdd:PLN03218  607 EYNIKGTPE-VYTIAVNSCSqKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTV 685

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 215697097  446 TYNILMGAYCRRLQPEVVESLLLEMQDLGLRPNARSYNFLIRVYGQQKKMsEKAEDAFLRMKTDGIMPTSSTYTSLLCAY 525
Cdd:PLN03218  686 SYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQL-PKALEVLSEMKRLGLCPNTITYSILLVAS 764

                         250       260       270
                  ....*....|....*....|....*....|....*..
gi 215697097  526 AVNGLHEKAYLTYVDMKREGLKPSLETYTALIDMFRR 562
Cdd:PLN03218  765 ERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLR 801
PLN03218 PLN03218
maturation of RBCL 1; Provisional
 284-632 1.44e-15

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 81.08  E-value: 1.44e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 215697097  284 ADEVLEIVEslppERRF-SEAVLYNAAMSGLAYRGRYDDTWKVFKLMEKKNIQPDHMTSLIMLDVMNKSKTSAKdAWEFF 362
Cdd:PLN03218  456 ALRVLRLVQ----EAGLkADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAK-AFGAY 530

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 215697097  363 QRMERKGVKWSLDICISLIKIFCDNGLKTEALIIQSAM--EKKGIASNTSMYNTLINAYCKANQIEEAEGVFVEMKEKGL 440
Cdd:PLN03218  531 GIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMkaETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNI 610

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 215697097  441 SATAMTYNILMGAYCRRLQPEVVESLLLEMQDLGLRPNARSYNFLIRVYGQqKKMSEKAEDAFLRMKTDGIMPTSSTYTS 520
Cdd:PLN03218  611 KGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGH-AGDLDKAFEILQDARKQGIKLGTVSYSS 689

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 215697097  521 LLCAYAVNGLHEKAYLTYVDMKREGLKPSLETYTALIDMFRRAGDTEKLMEtwrsminekvpgtrvifhmVLDglakhgl 600
Cdd:PLN03218  690 LMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALE-------------------VLS------- 743

                         330       340       350
                  ....*....|....*....|....*....|..
gi 215697097  601 yvqatdviyEFRRAGLQPTVMTYNILMNAFAR 632
Cdd:PLN03218  744 ---------EMKRLGLCPNTITYSILLVASER 766
PLN03218 PLN03218
maturation of RBCL 1; Provisional
 410-700 4.86e-15

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 79.54  E-value: 4.86e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 215697097  410 SMYNTLINAYCKANQIEEAEGVFVEMKEKGLSATAMTYNILMGAYCRRLQPEVVESLLLEMQDLGLRPNARSYNFLIRVY 489
Cdd:PLN03218  438 STFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGC 517

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 215697097  490 GQQKKMSeKAEDAFLRMKTDGIMPTSSTYTSLLCAYAVNGLHEKAYLTYVDMKREG--LKPSLETYTALIDMFRRAGDTE 567
Cdd:PLN03218  518 ARAGQVA-KAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAEThpIDPDHITVGALMKACANAGQVD 596

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 215697097  568 KLMETWRSMINEKVPGTRVIFHMVLDGLAKHGLYVQATDVIYEFRRAGLQPTVMTYNILMNAFARGGQHYKLPQLLKEMA 647
Cdd:PLN03218  597 RAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDAR 676

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 215697097  648 AMELKPDSVTYSTMIYAYARVRDFSRAF-YYHKlmVRSGQL-PDVSSYKKLLNTL 700
Cdd:PLN03218  677 KQGIKLGTVSYSSLMGACSNAKNWKKALeLYED--IKSIKLrPTVSTMNALITAL 729
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 408-456 5.20e-15

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 69.31  E-value: 5.20e-15
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 215697097  408 NTSMYNTLINAYCKANQIEEAEGVFVEMKEKGLSATAMTYNILMGAYCR 456
Cdd:pfam13041   2 DVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
PLN03077 PLN03077
Protein ECB2; Provisional
 306-700 6.39e-11

Protein ECB2; Provisional


Pssm-ID: 215561 [Multi-domain]  Cd Length: 857  Bit Score: 66.03  E-value: 6.39e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 215697097 306 YNAAMSGLAYRGRYDDTWKVFKLMEKKNIQPDHMT--SLIMLDVMNKSKTSAKDAWEFfqrMERKGVKWSLDICISLIKI 383
Cdd:PLN03077 256 WNAMISGYFENGECLEGLELFFTMRELSVDPDLMTitSVISACELLGDERLGREMHGY---VVKTGFAVDVSVCNSLIQM 332

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 215697097 384 FCDNGLKTEALIIQSAMEKKGIASNTSMyntlINAYCKANQIEEAEGVFVEMKEKGLSATAMTYNILMGAyCRRLQPEVV 463
Cdd:PLN03077 333 YLSLGSWGEAEKVFSRMETKDAVSWTAM----ISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSA-CACLGDLDV 407

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 215697097 464 EsllLEMQDLGLRPNARSY----NFLIRVYGQQKKMsEKAEDAFLRMKTDGIMptssTYTSLLCAYAVNGLHEKAYLTYV 539
Cdd:PLN03077 408 G---VKLHELAERKGLISYvvvaNALIEMYSKCKCI-DKALEVFHNIPEKDVI----SWTSIIAGLRLNNRCFEALIFFR 479

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 215697097 540 DMKREgLKPSLETYTALIDMFRRAGdteKLMEtwrsminekvpGTRVIFHMVLDGLAKHG--------LYVQATDVIYEF 611
Cdd:PLN03077 480 QMLLT-LKPNSVTLIAALSACARIG---ALMC-----------GKEIHAHVLRTGIGFDGflpnalldLYVRCGRMNYAW 544

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 215697097 612 RRAGLQPT-VMTYNILMNAFARGGQHYKLPQLLKEMAAMELKPDSVTYSTMIYAYARVRDFSRAF-YYHKLMVRSGQLPD 689
Cdd:PLN03077 545 NQFNSHEKdVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLeYFHSMEEKYSITPN 624

                        410
                 ....*....|.
gi 215697097 690 VSSYKKLLNTL 700
Cdd:PLN03077 625 LKHYACVVDLL 635
PLN03077 PLN03077
Protein ECB2; Provisional
 305-698 1.54e-10

Protein ECB2; Provisional


Pssm-ID: 215561 [Multi-domain]  Cd Length: 857  Bit Score: 64.87  E-value: 1.54e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 215697097 305 LYNAAMSGLAYRGRYDDTWKVFKLMEKKNIqpdhMTSLIMLDVMNKSKTSAKdAWEFFQRMERKGVKWSlDICISLIKIF 384
Cdd:PLN03077 325 VCNSLIQMYLSLGSWGEAEKVFSRMETKDA----VSWTAMISGYEKNGLPDK-ALETYALMEQDNVSPD-EITIASVLSA 398

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 215697097 385 C------DNGLKTEALiiqsaMEKKGIASNTSMYNTLINAYCKANQIEEAEGVFVEMKEKG-LSATAMTynilmgaycrr 457
Cdd:PLN03077 399 CaclgdlDVGVKLHEL-----AERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDvISWTSII----------- 462

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 215697097 458 lqpevveslllemqdLGLRPNARSYNFLIrvYGQQKKMSEKaedaflrmktdgimPTSSTYTSLLCAYAVNG-------L 530
Cdd:PLN03077 463 ---------------AGLRLNNRCFEALI--FFRQMLLTLK--------------PNSVTLIAALSACARIGalmcgkeI 511

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 215697097 531 HekAYLTYVDMKREGLKPSletytALIDMFRRAGDTEKLMETWRSmiNEKVPGTrviFHMVLDGLAKHGLYVQATDVIYE 610
Cdd:PLN03077 512 H--AHVLRTGIGFDGFLPN-----ALLDLYVRCGRMNYAWNQFNS--HEKDVVS---WNILLTGYVAHGKGSMAVELFNR 579

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 215697097 611 FRRAGLQPTVMTYNILMNAFARGGQhykLPQLLKEMAAMELK----PDSVTYSTMIYAYARVRDFSRAfyyHKLMVRSGQ 686
Cdd:PLN03077 580 MVESGVNPDEVTFISLLCACSRSGM---VTQGLEYFHSMEEKysitPNLKHYACVVDLLGRAGKLTEA---YNFINKMPI 653

                        410
                 ....*....|..
gi 215697097 687 LPDVSSYKKLLN 698
Cdd:PLN03077 654 TPDPAVWGALLN 665
PLN03081 PLN03081
pentatricopeptide (PPR) repeat-containing protein; Provisional
 400-664 2.67e-10

pentatricopeptide (PPR) repeat-containing protein; Provisional


Pssm-ID: 215563 [Multi-domain]  Cd Length: 697  Bit Score: 63.74  E-value: 2.67e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 215697097 400 MEKKGIASNTSMYNTLINAYCKANQIEEAEGVFVEMKEKGLsataMTYNILMGAYCRRLQPEVVESLLLEMQDLGLRPNA 479
Cdd:PLN03081 149 VESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNL----ASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEP 224

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 215697097 480 RSYNFLIRV--------YGQQKKM-SEKA---EDAFL-----------------RMKTDGiMPTSST--YTSLLCAYAVN 528
Cdd:PLN03081 225 RTFVVMLRAsaglgsarAGQQLHCcVLKTgvvGDTFVscalidmyskcgdiedaRCVFDG-MPEKTTvaWNSMLAGYALH 303

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 215697097 529 GLHEKAYLTYVDMKREGLKPSLETYTALIDMFRRAGDTEKLMETWRSMINEKVPGTRVIFHMVLDGLAKHGLYVQATDVI 608
Cdd:PLN03081 304 GYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVF 383

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 215697097 609 YEFRRAGLqptvMTYNILMNAFARGGQHYKLPQLLKEMAAMELKPDSVTYSTMIYA 664
Cdd:PLN03081 384 DRMPRKNL----ISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSA 435
PLN03081 PLN03081
pentatricopeptide (PPR) repeat-containing protein; Provisional
 296-751 3.15e-10

pentatricopeptide (PPR) repeat-containing protein; Provisional


Pssm-ID: 215563 [Multi-domain]  Cd Length: 697  Bit Score: 63.74  E-value: 3.15e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 215697097 296 PERrfsEAVLYNAAMSGLAYRGRYDDTWKVFKLMEKKNIQPDHMTSLIMLDVMNKSkTSAKDAWEFFQRMERKGVKWSLD 375
Cdd:PLN03081 185 PER---NLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGL-GSARAGQQLHCCVLKTGVVGDTF 260

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 215697097 376 ICISLIKIFCDNGLKTEALIIQSAMEKKgiasNTSMYNTLINAYCKANQIEEAEGVFVEMKEKGLSATAMTYNILMGAYC 455
Cdd:PLN03081 261 VSCALIDMYSKCGDIEDARCVFDGMPEK----TTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFS 336

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 215697097 456 RRLQPEVVESLLLEMQDLGLRPNARSYNFLIRVYGQQKKMsEKAEDAFLRMKTDGIMptssTYTSLLCAYAVNGLHEKAY 535
Cdd:PLN03081 337 RLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRM-EDARNVFDRMPRKNLI----SWNALIAGYGNHGRGTKAV 411

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 215697097 536 LTYVDMKREGLKPSLETYTALIDMFRRAGDTEKLMETWRSMI-NEKVPGTRVIFHMVLDGLAKHGLYVQATDVIyefRRA 614
Cdd:PLN03081 412 EMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSeNHRIKPRAMHYACMIELLGREGLLDEAYAMI---RRA 488

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 215697097 615 GLQPTVMTYNILMNAfARGGQHYKLPQLLKE-MAAMElkPDSVTYSTMIYayarvrdfsrafyyhKLMVRSGQLPDVSsy 693
Cdd:PLN03081 489 PFKPTVNMWAALLTA-CRIHKNLELGRLAAEkLYGMG--PEKLNNYVVLL---------------NLYNSSGRQAEAA-- 548

                        410       420       430       440       450       460
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 215697097 694 kKLLNTLDvkaaRKNIKDKNAIVGILKGKSSlkHRKEKKDEFWKN-----RKKRSMMNHV--YGY 751
Cdd:PLN03081 549 -KVVETLK----RKGLSMHPACTWIEVKKQD--HSFFSGDRLHPQsreiyQKLDELMKEIseYGY 606
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 513-560 2.60e-09

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 53.52  E-value: 2.60e-09
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 215697097  513 PTSSTYTSLLCAYAVNGLHEKAYLTYVDMKREGLKPSLETYTALIDMF 560
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGL 48
PPR_3 pfam13812
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ...
 400-457 3.06e-09

Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.


Pssm-ID: 316342 [Multi-domain]  Cd Length: 63  Bit Score: 53.52  E-value: 3.06e-09
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 215697097  400 MEKKGIASNTSMYNTLINAYCKANQIEEAEGVFVEMKEKGLSATAMTYNILMGAYCRR 457
Cdd:pfam13812   6 MVRDGIQLNVNTYTHLLHAYANVGNLKLALEIFERMKKKGIKPTLDTYNAILGVIGGR 63
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 618-667 8.33e-09

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 51.98  E-value: 8.33e-09
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 215697097  618 PTVMTYNILMNAFARGGQHYKLPQLLKEMAAMELKPDSVTYSTMIYAYAR 667
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
PPR_1 pfam12854
PPR repeat; This family matches additional variants of the PPR repeat that were not captured ...
 403-436 1.42e-08

PPR repeat; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known.


Pssm-ID: 403914 [Multi-domain]  Cd Length: 34  Bit Score: 50.81  E-value: 1.42e-08
                          10        20        30
                  ....*....|....*....|....*....|....
gi 215697097  403 KGIASNTSMYNTLINAYCKANQIEEAEGVFVEMK 436
Cdd:pfam12854   1 KGLKPDVVTYNTLINGLCRAGRVDEAFELLDEME 34
PPR_3 pfam13812
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ...
 465-528 1.91e-08

Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.


Pssm-ID: 316342 [Multi-domain]  Cd Length: 63  Bit Score: 51.20  E-value: 1.91e-08
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 215697097  465 SLLLEMQDLGLRPNARSYNFLIRVYGQQKKMsEKAEDAFLRMKTDGIMPTSSTYTSLLCAYAVN 528
Cdd:pfam13812   1 SILREMVRDGIQLNVNTYTHLLHAYANVGNL-KLALEIFERMKKKGIKPTLDTYNAILGVIGGR 63
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 446-489 2.62e-08

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 50.44  E-value: 2.62e-08
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 215697097  446 TYNILMGAYCRRLQPEVVESLLLEMQDLGLRPNARSYNFLIRVY 489
Cdd:pfam13041   5 TYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGL 48
PPR pfam01535
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ...
 410-440 4.52e-08

PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.


Pssm-ID: 366695 [Multi-domain]  Cd Length: 31  Bit Score: 49.39  E-value: 4.52e-08
                          10        20        30
                  ....*....|....*....|....*....|.
gi 215697097  410 SMYNTLINAYCKANQIEEAEGVFVEMKEKGL 440
Cdd:pfam01535   1 VTYNSLISGYCKNGKLEEALELFKEMKEKGI 31
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 477-526 5.10e-08

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 49.67  E-value: 5.10e-08
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 215697097  477 PNARSYNFLIRVYGQQKKMsEKAEDAFLRMKTDGIMPTSSTYTSLLCAYA 526
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGKV-EEAFKLFNEMKKRGVKPNVYTYTILINGLC 49
PPR_3 pfam13812
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ...
 506-560 7.31e-08

Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.


Pssm-ID: 316342 [Multi-domain]  Cd Length: 63  Bit Score: 49.66  E-value: 7.31e-08
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 215697097  506 MKTDGIMPTSSTYTSLLCAYAVNGLHEKAYLTYVDMKREGLKPSLETYTALIDMF 560
Cdd:pfam13812   6 MVRDGIQLNVNTYTHLLHAYANVGNLKLALEIFERMKKKGIKPTLDTYNAILGVI 60
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 411-444 2.90e-07

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 47.06  E-value: 2.90e-07
                          10        20        30
                  ....*....|....*....|....*....|....
gi 215697097  411 MYNTLINAYCKANQIEEAEGVFVEMKEKGLSATA 444
Cdd:TIGR00756   2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
PLN03081 PLN03081
pentatricopeptide (PPR) repeat-containing protein; Provisional
 306-523 4.87e-07

pentatricopeptide (PPR) repeat-containing protein; Provisional


Pssm-ID: 215563 [Multi-domain]  Cd Length: 697  Bit Score: 53.34  E-value: 4.87e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 215697097 306 YNAAMSGLAYRGRYDDTWKVFKLMEKKNIQPDHMTSLIMLDVMNKSKTSAKdAWEFFQRM-ERKGVKWSLDICISLIKIF 384
Cdd:PLN03081 394 WNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQ-GWEIFQSMsENHRIKPRAMHYACMIELL 472

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 215697097 385 CDNGLKTEALI----------------------IQSAMEKKGIASNT---------SMYNTLINAYCKANQIEEAEGVFV 433
Cdd:PLN03081 473 GREGLLDEAYAmirrapfkptvnmwaalltacrIHKNLELGRLAAEKlygmgpeklNNYVVLLNLYNSSGRQAEAAKVVE 552

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 215697097 434 EMKEKGLSATA---------MTYNILMGAYCRRLQPEV---VESLLLEMQDLGLRPNARsyNFLIRVYGQQKKM-----S 496
Cdd:PLN03081 553 TLKRKGLSMHPactwievkkQDHSFFSGDRLHPQSREIyqkLDELMKEISEYGYVAEEN--ELLPDVDEDEEKVsgryhS 630

                        250       260
                 ....*....|....*....|....*..
gi 215697097 497 EKAEDAFLRMKTDGIMPTSSTYTSLLC 523
Cdd:PLN03081 631 EKLAIAFGLINTSEWTPLQITQSHRIC 657
PPR_3 pfam13812
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ...
 362-419 2.72e-06

Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.


Pssm-ID: 316342 [Multi-domain]  Cd Length: 63  Bit Score: 45.43  E-value: 2.72e-06
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 215697097  362 FQRMERKGVKWSLDICISLIKIFCDNGLKTEALIIQSAMEKKGIASNTSMYNTLINAY 419
Cdd:pfam13812   3 LREMVRDGIQLNVNTYTHLLHAYANVGNLKLALEIFERMKKKGIKPTLDTYNAILGVI 60
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 304-346 4.69e-06

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 44.28  E-value: 4.69e-06
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|...
gi 215697097  304 VLYNAAMSGLAYRGRYDDTWKVFKLMEKKNIQPDHMTSLIMLD 346
Cdd:pfam13041   4 VTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILIN 46
PPR_long pfam17177
Pentacotripeptide-repeat region of PRORP; Pentatricopeptide repeat (PPR) proteins are a large ...
 391-561 6.01e-06

Pentacotripeptide-repeat region of PRORP; Pentatricopeptide repeat (PPR) proteins are a large family of modular RNA-binding proteins which mediate several aspects of gene expression primarily in organelles but also in the nucleus. PPR_long is the region of Arabidopsis protein-only RNase P (PRORP) enzyme that consists of up to eleven alpha-helices. PRORPs are a class of RNA processing enzymes that catalyze maturation of the 5' end of precursor tRNAs in Eukaryotes. All PPR proteins contain tandemly repeated sequence motifs (the PPR motifs) which can vary in number. The series of helix-turn-helix motifs formed by PPR motifs throughout the protein produces a superheros with a central groove that allows the protein to bind RNA. Proteins containing PPR motifs are known to have roles in transcription, RNA processing, splicing, stability, editing, and translation. Over a decade after the discovery of PPR proteins, the super-helical structure was confirmed. The protein-only mitochondrial RNase P crystal structure from Arabidopsis thaliana (PRORP1) confirmed the role of its PPR motifs in pre-tRNA binding and suggest it has evolved independently from other RNase P proteins that rely on catalytic RNA.


Pssm-ID: 407303 [Multi-domain]  Cd Length: 212  Bit Score: 47.78  E-value: 6.01e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 215697097  391 TEALIIQSAMEKKGIASNTSMYNTLINAYCKANQIEEAEG---------VFVEMKEKGLSATAMTYNILMGAYCRRLQPE 461
Cdd:pfam17177  28 TGALALYDAAKAEGVRLAQYHYNVLLYLCSKAADATDLKPqlaadrgfeVFEAMKAQGVSPNEATYTAVARLAAAKGDGD 107

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 215697097  462 VVESLLLEMQDLGLRPNARSYNFLIRVYGQQKKMsEKAEDAFLRMKTDGIMPTSSTYTSLLCAYAVNGLHEKAYLTYVDM 541
Cdd:pfam17177 108 LAFDLVKEMEAAGVSPRLRSYSPALHAYCEAGDA-DKAYEVEEHMLAHGVELEEPELAALLKVSAKAGRADKVYAYLHRL 186

                         170       180
                  ....*....|....*....|
gi 215697097  542 KREGLKPSLETYTALIDMFR 561
Cdd:pfam17177 187 RDAVRQVSESTAGVLEEWFR 206
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 653-700 1.70e-05

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 42.74  E-value: 1.70e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 215697097  653 PDSVTYSTMIYAYARVRDFSRAFYYHKLMVRSGQLPDVSSYKKLLNTL 700
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGL 48
PPR_3 pfam13812
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ...
 642-699 3.67e-05

Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.


Pssm-ID: 316342 [Multi-domain]  Cd Length: 63  Bit Score: 41.96  E-value: 3.67e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 215697097  642 LLKEMAAMELKPDSVTYSTMIYAYARVRDFSRAFYYHKLMVRSGQLPDVSSYKKLLNT 699
Cdd:pfam13812   2 ILREMVRDGIQLNVNTYTHLLHAYANVGNLKLALEIFERMKKKGIKPTLDTYNAILGV 59
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 656-690 6.71e-05

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 40.52  E-value: 6.71e-05
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 215697097  656 VTYSTMIYAYARVRDFSRAFYYHKLMVRSGQLPDV 690
Cdd:TIGR00756   1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 304-337 9.65e-05

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 40.13  E-value: 9.65e-05
                          10        20        30
                  ....*....|....*....|....*....|....
gi 215697097  304 VLYNAAMSGLAYRGRYDDTWKVFKLMEKKNIQPD 337
Cdd:TIGR00756   1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 586-632 1.04e-04

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 40.42  E-value: 1.04e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 215697097  586 VIFHMVLDGLAKHGLYVQATDVIYEFRRAGLQPTVMTYNILMNAFAR 632
Cdd:pfam13041   4 VTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
PPR_3 pfam13812
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ...
 540-630 1.14e-04

Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.


Pssm-ID: 316342 [Multi-domain]  Cd Length: 63  Bit Score: 40.80  E-value: 1.14e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 215697097  540 DMKREGLKPSLETYTALIDMFRRAGDTEKLMETWRSMinekvpgtrvifhmvldglakhglyvqatdviyefRRAGLQPT 619
Cdd:pfam13812   5 EMVRDGIQLNVNTYTHLLHAYANVGNLKLALEIFERM-----------------------------------KKKGIKPT 49

                          90
                  ....*....|.
gi 215697097  620 VMTYNILMNAF 630
Cdd:pfam13812  50 LDTYNAILGVI 60
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 379-421 1.45e-04

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 40.04  E-value: 1.45e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|...
gi 215697097  379 SLIKIFCDNGLKTEALIIQSAMEKKGIASNTSMYNTLINAYCK 421
Cdd:pfam13041   8 TLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
PPR_3 pfam13812
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ...
 431-490 1.67e-04

Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.


Pssm-ID: 316342 [Multi-domain]  Cd Length: 63  Bit Score: 40.03  E-value: 1.67e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 215697097  431 VFVEMKEKGLSATAMTYNILMGAYCRRLQPEVVESLLLEMQDLGLRPNARSYNFLIRVYG 490
Cdd:pfam13812   2 ILREMVRDGIQLNVNTYTHLLHAYANVGNLKLALEIFERMKKKGIKPTLDTYNAILGVIG 61
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 445-479 3.08e-04

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 38.59  E-value: 3.08e-04
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 215697097  445 MTYNILMGAYCRRLQPEVVESLLLEMQDLGLRPNA 479
Cdd:TIGR00756   1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
PPR_long pfam17177
Pentacotripeptide-repeat region of PRORP; Pentatricopeptide repeat (PPR) proteins are a large ...
 350-451 4.19e-04

Pentacotripeptide-repeat region of PRORP; Pentatricopeptide repeat (PPR) proteins are a large family of modular RNA-binding proteins which mediate several aspects of gene expression primarily in organelles but also in the nucleus. PPR_long is the region of Arabidopsis protein-only RNase P (PRORP) enzyme that consists of up to eleven alpha-helices. PRORPs are a class of RNA processing enzymes that catalyze maturation of the 5' end of precursor tRNAs in Eukaryotes. All PPR proteins contain tandemly repeated sequence motifs (the PPR motifs) which can vary in number. The series of helix-turn-helix motifs formed by PPR motifs throughout the protein produces a superheros with a central groove that allows the protein to bind RNA. Proteins containing PPR motifs are known to have roles in transcription, RNA processing, splicing, stability, editing, and translation. Over a decade after the discovery of PPR proteins, the super-helical structure was confirmed. The protein-only mitochondrial RNase P crystal structure from Arabidopsis thaliana (PRORP1) confirmed the role of its PPR motifs in pre-tRNA binding and suggest it has evolved independently from other RNase P proteins that rely on catalytic RNA.


Pssm-ID: 407303 [Multi-domain]  Cd Length: 212  Bit Score: 42.38  E-value: 4.19e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 215697097  350 KSKTSAKDAWEFFQRMERKGVKWSLDICISLIKIFCDNGLKTEALIIQSAMEKKGIASNTSMYNTLINAYCKANQIEEAE 429
Cdd:pfam17177  66 KPQLAADRGFEVFEAMKAQGVSPNEATYTAVARLAAAKGDGDLAFDLVKEMEAAGVSPRLRSYSPALHAYCEAGDADKAY 145

                          90       100
                  ....*....|....*....|..
gi 215697097  430 GVFVEMKEKGLSATAMTYNILM 451
Cdd:pfam17177 146 EVEEHMLAHGVELEEPELAALL 167
PPR_3 pfam13812
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ...
 610-665 1.25e-03

Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.


Pssm-ID: 316342 [Multi-domain]  Cd Length: 63  Bit Score: 37.72  E-value: 1.25e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 215697097  610 EFRRAGLQPTVMTYNILMNAFARGGQHYKLPQLLKEMAAMELKPDSVTYSTMIYAY 665
Cdd:pfam13812   5 EMVRDGIQLNVNTYTHLLHAYANVGNLKLALEIFERMKKKGIKPTLDTYNAILGVI 60
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 517-549 1.37e-03

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 36.66  E-value: 1.37e-03
                          10        20        30
                  ....*....|....*....|....*....|...
gi 215697097  517 TYTSLLCAYAVNGLHEKAYLTYVDMKREGLKPS 549
Cdd:TIGR00756   2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
PPR pfam01535
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ...
 446-475 2.08e-03

PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.


Pssm-ID: 366695 [Multi-domain]  Cd Length: 31  Bit Score: 36.29  E-value: 2.08e-03
                          10        20        30
                  ....*....|....*....|....*....|
gi 215697097  446 TYNILMGAYCRRLQPEVVESLLLEMQDLGL 475
Cdd:pfam01535   2 TYNSLISGYCKNGKLEEALELFKEMKEKGI 31
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 621-655 2.33e-03

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 36.28  E-value: 2.33e-03
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 215697097  621 MTYNILMNAFARGGQHYKLPQLLKEMAAMELKPDS 655
Cdd:TIGR00756   1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
PPR pfam01535
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ...
 516-546 4.40e-03

PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.


Pssm-ID: 366695 [Multi-domain]  Cd Length: 31  Bit Score: 35.13  E-value: 4.40e-03
                          10        20        30
                  ....*....|....*....|....*....|.
gi 215697097  516 STYTSLLCAYAVNGLHEKAYLTYVDMKREGL 546
Cdd:pfam01535   1 VTYNSLISGYCKNGKLEEALELFKEMKEKGI 31
PPR pfam01535
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ...
 656-685 4.81e-03

PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.


Pssm-ID: 366695 [Multi-domain]  Cd Length: 31  Bit Score: 35.13  E-value: 4.81e-03
                          10        20        30
                  ....*....|....*....|....*....|
gi 215697097  656 VTYSTMIYAYARVRDFSRAFYYHKLMVRSG 685
Cdd:pfam01535   1 VTYNSLISGYCKNGKLEEALELFKEMKEKG 30
RPM2 pfam08579
Mitochondrial ribonuclease P subunit (RPM2); Ribonuclease P (RNase P) generates mature tRNA ...
 516-597 8.88e-03

Mitochondrial ribonuclease P subunit (RPM2); Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. RPM2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as transcriptional activator in the nucleus where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components.


Pssm-ID: 369970 [Multi-domain]  Cd Length: 119  Bit Score: 37.04  E-value: 8.88e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 215697097  516 STYTSLLCAYAVNGLHEKAYLTYVDMKREGLKPSLETYT-ALIDMFRRAGDTE-------KLMETWRSMINEKVPGTRVI 587
Cdd:pfam08579  26 HTQIKEIEACYEKKNYNKINALYQSLKRNGIVPPLELFEqVLKSICRRDLDNNdidnkmfELLTCYQDIIVNKLKPNKEI 105

                          90
                  ....*....|
gi 215697097  588 FHMVLDGLAK 597
Cdd:pfam08579 106 YNIVLGSLLK 115
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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