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Conserved domains on  [gi|215695532|dbj|BAG90723|]
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unnamed protein product [Oryza sativa Japonica Group]

Protein Classification

ELF4 family protein( domain architecture ID 10537089)

ELF4 family protein similar to Arabidopsis thaliana protein EARLY FLOWERING 4 (ELF4), a component of the central CCA1/LHY-TOC1 feedback loop in the circadian clock that promotes clock accuracy and is required for sustained rhythms in the absence of daily light/dark cycles

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Elf4 pfam07011
Early Flowering 4 domain; This domain forms an alpha-helical homodimer in ELF4 proteins. ...
 14-96 2.04e-46

Early Flowering 4 domain; This domain forms an alpha-helical homodimer in ELF4 proteins. Protein EARLY FLOWERING 4 (Elf4) is a component of the central CCA1/LHY-TOC1 feedback loop in the circadian clock that promotes clock accuracy and is required for sustained rhythms in the absence of daily light/dark cycles.


:

Pssm-ID: 429247  Cd Length: 83  Bit Score: 144.35  E-value: 2.04e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 215695532   14 QVDNKLIQTFHKSFVQVQSILDQNRMLINEINQNHESRAPDNLTRNVGLIRELNNNIRRVVGLYADLSASFARTMDASSE 93
Cdd:pfam07011   1 QVDGKVWQTFQKSFRQVQSVLDQNRLLIQEVNQNHESRIPDNLSRNVGLIRELNGNISRVVSLYSDLSLSFSKSFEASSE 80


                  ...
gi 215695532   94 GDS 96
Cdd:pfam07011  81 GDS 83
 
Name Accession Description Interval E-value
Elf4 pfam07011
Early Flowering 4 domain; This domain forms an alpha-helical homodimer in ELF4 proteins. ...
 14-96 2.04e-46

Early Flowering 4 domain; This domain forms an alpha-helical homodimer in ELF4 proteins. Protein EARLY FLOWERING 4 (Elf4) is a component of the central CCA1/LHY-TOC1 feedback loop in the circadian clock that promotes clock accuracy and is required for sustained rhythms in the absence of daily light/dark cycles.


Pssm-ID: 429247  Cd Length: 83  Bit Score: 144.35  E-value: 2.04e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 215695532   14 QVDNKLIQTFHKSFVQVQSILDQNRMLINEINQNHESRAPDNLTRNVGLIRELNNNIRRVVGLYADLSASFARTMDASSE 93
Cdd:pfam07011   1 QVDGKVWQTFQKSFRQVQSVLDQNRLLIQEVNQNHESRIPDNLSRNVGLIRELNGNISRVVSLYSDLSLSFSKSFEASSE 80


                  ...
gi 215695532   94 GDS 96
Cdd:pfam07011  81 GDS 83
 
Name Accession Description Interval E-value
Elf4 pfam07011
Early Flowering 4 domain; This domain forms an alpha-helical homodimer in ELF4 proteins. ...
 14-96 2.04e-46

Early Flowering 4 domain; This domain forms an alpha-helical homodimer in ELF4 proteins. Protein EARLY FLOWERING 4 (Elf4) is a component of the central CCA1/LHY-TOC1 feedback loop in the circadian clock that promotes clock accuracy and is required for sustained rhythms in the absence of daily light/dark cycles.


Pssm-ID: 429247  Cd Length: 83  Bit Score: 144.35  E-value: 2.04e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 215695532   14 QVDNKLIQTFHKSFVQVQSILDQNRMLINEINQNHESRAPDNLTRNVGLIRELNNNIRRVVGLYADLSASFARTMDASSE 93
Cdd:pfam07011   1 QVDGKVWQTFQKSFRQVQSVLDQNRLLIQEVNQNHESRIPDNLSRNVGLIRELNGNISRVVSLYSDLSLSFSKSFEASSE 80


                  ...
gi 215695532   94 GDS 96
Cdd:pfam07011  81 GDS 83
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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