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Conserved domains on  [gi|215694662|dbj|BAG89853|]
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unnamed protein product [Oryza sativa Japonica Group]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PLN03091 super family cl33633
hypothetical protein; Provisional
 22-91 1.31e-32

hypothetical protein; Provisional


The actual alignment was detected with superfamily member PLN03091:

Pssm-ID: 215570 [Multi-domain]  Cd Length: 459  Bit Score: 122.01  E-value: 1.31e-32
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 215694662  22 AGLQRSGKSCRLRWVNYLHPGLKRGRMSPEEERMVVQLHAKLGNRWSRIAKSIPGRTDNEIKNYWRTHLR 91
Cdd:PLN03091  44 AGLQRCGKSCRLRWINYLRPDLKRGTFSQQEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLK 113
 
Name Accession Description Interval E-value
PLN03091 PLN03091
hypothetical protein; Provisional
 22-91 1.31e-32

hypothetical protein; Provisional


Pssm-ID: 215570 [Multi-domain]  Cd Length: 459  Bit Score: 122.01  E-value: 1.31e-32
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 215694662  22 AGLQRSGKSCRLRWVNYLHPGLKRGRMSPEEERMVVQLHAKLGNRWSRIAKSIPGRTDNEIKNYWRTHLR 91
Cdd:PLN03091  44 AGLQRCGKSCRLRWINYLRPDLKRGTFSQQEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLK 113
Myb_DNA-binding pfam00249
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 45-90 1.07e-16

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 459731 [Multi-domain]  Cd Length: 46  Bit Score: 70.61  E-value: 1.07e-16
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 215694662   45 RGRMSPEEERMVVQLHAKLGNRWSRIAKSIPGRTDNEIKNYWRTHL 90
Cdd:pfam00249   1 RGPWTPEEDELLLEAVEKLGNRWKKIAKLLPGRTDNQCKNRWQNYL 46
SANT smart00717
SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;
45-91 8.56e-13

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;


Pssm-ID: 197842 [Multi-domain]  Cd Length: 49  Bit Score: 60.32  E-value: 8.56e-13
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*...
gi 215694662    45 RGRMSPEEERMVVQLHAKLG-NRWSRIAKSIPGRTDNEIKNYWRTHLR 91
Cdd:smart00717   1 KGEWTEEEDELLIELVKKYGkNNWEKIAKELPGRTAEQCRERWRNLLK 48
SANT cd00167
'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric ...
 47-90 1.88e-12

'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.


Pssm-ID: 238096 [Multi-domain]  Cd Length: 45  Bit Score: 59.51  E-value: 1.88e-12
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*
gi 215694662  47 RMSPEEERMVVQLHAKLG-NRWSRIAKSIPGRTDNEIKNYWRTHL 90
Cdd:cd00167    1 PWTEEEDELLLEAVKKYGkNNWEKIAKELPGRTPKQCRERWRNLL 45
REB1 COG5147
Myb superfamily proteins, including transcription factors and mRNA splicing factors ...
 16-86 7.90e-11

Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning];


Pssm-ID: 227476 [Multi-domain]  Cd Length: 512  Bit Score: 60.57  E-value: 7.90e-11
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 215694662  16 GWCVADAGLQRS-GKSCRLRWVNYLHPGLKRGRMSPEEERMVVQLHAKLGNRWSRIAKSIPGRTDNEIKNYW 86
Cdd:COG5147   42 NWSKVASLLISStGKQSSNRWNNHLNPQLKKKNWSEEEDEQLIDLDKELGTQWSTIADYKDRRTAQQCVERY 113
 
Name Accession Description Interval E-value
PLN03091 PLN03091
hypothetical protein; Provisional
 22-91 1.31e-32

hypothetical protein; Provisional


Pssm-ID: 215570 [Multi-domain]  Cd Length: 459  Bit Score: 122.01  E-value: 1.31e-32
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 215694662  22 AGLQRSGKSCRLRWVNYLHPGLKRGRMSPEEERMVVQLHAKLGNRWSRIAKSIPGRTDNEIKNYWRTHLR 91
Cdd:PLN03091  44 AGLQRCGKSCRLRWINYLRPDLKRGTFSQQEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLK 113
PLN03212 PLN03212
Transcription repressor MYB5; Provisional
 22-91 4.97e-30

Transcription repressor MYB5; Provisional


Pssm-ID: 178751 [Multi-domain]  Cd Length: 249  Bit Score: 111.32  E-value: 4.97e-30
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 215694662  22 AGLQRSGKSCRLRWVNYLHPGLKRGRMSPEEERMVVQLHAKLGNRWSRIAKSIPGRTDNEIKNYWRTHLR 91
Cdd:PLN03212  55 AGLLRCGKSCRLRWMNYLRPSVKRGGITSDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLR 124
Myb_DNA-binding pfam00249
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 45-90 1.07e-16

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 459731 [Multi-domain]  Cd Length: 46  Bit Score: 70.61  E-value: 1.07e-16
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 215694662   45 RGRMSPEEERMVVQLHAKLGNRWSRIAKSIPGRTDNEIKNYWRTHL 90
Cdd:pfam00249   1 RGPWTPEEDELLLEAVEKLGNRWKKIAKLLPGRTDNQCKNRWQNYL 46
SANT smart00717
SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;
45-91 8.56e-13

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;


Pssm-ID: 197842 [Multi-domain]  Cd Length: 49  Bit Score: 60.32  E-value: 8.56e-13
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*...
gi 215694662    45 RGRMSPEEERMVVQLHAKLG-NRWSRIAKSIPGRTDNEIKNYWRTHLR 91
Cdd:smart00717   1 KGEWTEEEDELLIELVKKYGkNNWEKIAKELPGRTAEQCRERWRNLLK 48
SANT cd00167
'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric ...
 47-90 1.88e-12

'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.


Pssm-ID: 238096 [Multi-domain]  Cd Length: 45  Bit Score: 59.51  E-value: 1.88e-12
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*
gi 215694662  47 RMSPEEERMVVQLHAKLG-NRWSRIAKSIPGRTDNEIKNYWRTHL 90
Cdd:cd00167    1 PWTEEEDELLLEAVKKYGkNNWEKIAKELPGRTPKQCRERWRNLL 45
REB1 COG5147
Myb superfamily proteins, including transcription factors and mRNA splicing factors ...
 16-86 7.90e-11

Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning];


Pssm-ID: 227476 [Multi-domain]  Cd Length: 512  Bit Score: 60.57  E-value: 7.90e-11
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 215694662  16 GWCVADAGLQRS-GKSCRLRWVNYLHPGLKRGRMSPEEERMVVQLHAKLGNRWSRIAKSIPGRTDNEIKNYW 86
Cdd:COG5147   42 NWSKVASLLISStGKQSSNRWNNHLNPQLKKKNWSEEEDEQLIDLDKELGTQWSTIADYKDRRTAQQCVERY 113
Myb_DNA-bind_6 pfam13921
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 49-91 3.66e-06

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 372817 [Multi-domain]  Cd Length: 60  Bit Score: 43.07  E-value: 3.66e-06
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|...
gi 215694662   49 SPEEERMVVQLHAKLGNRWSRIAKSIPGRTDNEIKNYWRTHLR 91
Cdd:pfam13921   2 TEEEDEKLLKLVEKYGNDWKQIAKELGRRTPKQCFDRWRRKLN 44
Myb_DNA-bind_6 pfam13921
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 25-56 9.64e-03

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 372817 [Multi-domain]  Cd Length: 60  Bit Score: 33.44  E-value: 9.64e-03
                          10        20        30
                  ....*....|....*....|....*....|..
gi 215694662   25 QRSGKSCRLRWVNYLHPGLKRGRMSPEEERMV 56
Cdd:pfam13921  29 RRTPKQCFDRWRRKLNPKISRGPWSKEEDQRL 60
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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