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Conserved domains on  [gi|215400776|ref|YP_002327537|]
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ribosomal protein L35 (chloroplast) [Vaucheria litorea]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
RpmI COG0291
Ribosomal protein L35 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L35 ...
 1-64 6.51e-11

Ribosomal protein L35 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L35 is part of the Pathway/BioSystem: Ribosome 50S subunit


:

Pssm-ID: 440060  Cd Length: 64  Bit Score: 51.59  E-value: 6.51e-11
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 215400776  1 MNKLKSKirKAVKKRYKQTRKNNFIRKKAFKGHILEKKSSKRKRNLSHSVVVTFSDLRAIRRML 64
Cdd:COG0291   1 MPKMKTH--SGAKKRFKVTGSGKIKRKKAGKRHLLTKKSTKRKRRLRGTTVVSKADAKRVKRLL 62
 
Name Accession Description Interval E-value
RpmI COG0291
Ribosomal protein L35 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L35 ...
 1-64 6.51e-11

Ribosomal protein L35 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L35 is part of the Pathway/BioSystem: Ribosome 50S subunit


Pssm-ID: 440060  Cd Length: 64  Bit Score: 51.59  E-value: 6.51e-11
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 215400776  1 MNKLKSKirKAVKKRYKQTRKNNFIRKKAFKGHILEKKSSKRKRNLSHSVVVTFSDLRAIRRML 64
Cdd:COG0291   1 MPKMKTH--SGAKKRFKVTGSGKIKRKKAGKRHLLTKKSTKRKRRLRGTTVVSKADAKRVKRLL 62
rpl35 CHL00103
ribosomal protein L35
 5-64 3.89e-10

ribosomal protein L35


Pssm-ID: 214367  Cd Length: 65  Bit Score: 49.70  E-value: 3.89e-10
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|
gi 215400776  5 KSKIRKAVKKRYKQTRKNNFIRKKAFKGHILEKKSSKRKRNLSHSVVVTFSDLRAIRRML 64
Cdd:CHL00103  3 KLKTRKAAAKRYKKTGNGKFLRRKAFKSHLLQKKSSKQKRKLSQTVCVSKGDSKSIKLML 62
Ribosomal_L35p pfam01632
Ribosomal protein L35;
5-64 5.06e-09

Ribosomal protein L35;


Pssm-ID: 460273  Cd Length: 61  Bit Score: 46.59  E-value: 5.06e-09
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 215400776   5 KSKIRKAVKKRYKQTRKNNFIRKKAFKGHILEKKSSKRKRNLSHSVVVTFSDLRAIRRML 64
Cdd:pfam01632  2 KMKTHKGAAKRFKVTGSGKIKRRKAGKRHILTKKSTKRKRRLRKTVLVSKADAKRVKKLL 61
rpmI_bact TIGR00001
ribosomal protein L35; This ribosomal protein is found in bacteria and organelles only. It is ...
 5-64 1.91e-08

ribosomal protein L35; This ribosomal protein is found in bacteria and organelles only. It is not closely related to any eukaryotic or archaeal ribosomal protein. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 272847  Cd Length: 63  Bit Score: 45.35  E-value: 1.91e-08
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 215400776   5 KSKIRKAVKKRYKQTRKNNFIRKKAFKGHILEKKSSKRKRNLSHSVVVTFSDLRAIRRML 64
Cdd:TIGR00001  2 KMKTHKAAAKRFKITGSGKIKRKKAGKRHLLTKKSSKRKRQLRKKAVVSKGDLKRVKLLL 61
 
Name Accession Description Interval E-value
RpmI COG0291
Ribosomal protein L35 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L35 ...
 1-64 6.51e-11

Ribosomal protein L35 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L35 is part of the Pathway/BioSystem: Ribosome 50S subunit


Pssm-ID: 440060  Cd Length: 64  Bit Score: 51.59  E-value: 6.51e-11
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 215400776  1 MNKLKSKirKAVKKRYKQTRKNNFIRKKAFKGHILEKKSSKRKRNLSHSVVVTFSDLRAIRRML 64
Cdd:COG0291   1 MPKMKTH--SGAKKRFKVTGSGKIKRKKAGKRHLLTKKSTKRKRRLRGTTVVSKADAKRVKRLL 62
rpl35 CHL00103
ribosomal protein L35
 5-64 3.89e-10

ribosomal protein L35


Pssm-ID: 214367  Cd Length: 65  Bit Score: 49.70  E-value: 3.89e-10
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|
gi 215400776  5 KSKIRKAVKKRYKQTRKNNFIRKKAFKGHILEKKSSKRKRNLSHSVVVTFSDLRAIRRML 64
Cdd:CHL00103  3 KLKTRKAAAKRYKKTGNGKFLRRKAFKSHLLQKKSSKQKRKLSQTVCVSKGDSKSIKLML 62
Ribosomal_L35p pfam01632
Ribosomal protein L35;
5-64 5.06e-09

Ribosomal protein L35;


Pssm-ID: 460273  Cd Length: 61  Bit Score: 46.59  E-value: 5.06e-09
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 215400776   5 KSKIRKAVKKRYKQTRKNNFIRKKAFKGHILEKKSSKRKRNLSHSVVVTFSDLRAIRRML 64
Cdd:pfam01632  2 KMKTHKGAAKRFKVTGSGKIKRRKAGKRHILTKKSTKRKRRLRKTVLVSKADAKRVKKLL 61
rpmI_bact TIGR00001
ribosomal protein L35; This ribosomal protein is found in bacteria and organelles only. It is ...
 5-64 1.91e-08

ribosomal protein L35; This ribosomal protein is found in bacteria and organelles only. It is not closely related to any eukaryotic or archaeal ribosomal protein. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 272847  Cd Length: 63  Bit Score: 45.35  E-value: 1.91e-08
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 215400776   5 KSKIRKAVKKRYKQTRKNNFIRKKAFKGHILEKKSSKRKRNLSHSVVVTFSDLRAIRRML 64
Cdd:TIGR00001  2 KMKTHKAAAKRFKITGSGKIKRKKAGKRHLLTKKSSKRKRQLRKKAVVSKGDLKRVKLLL 61
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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