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Conserved domains on  [gi|21327349|gb|AAM48254|]
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Hypothetical protein ORF91 from chromosome 10 chloroplast insertion [Oryza sativa Japonica Group]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Ycf70 super family cl38664
Uncharacterized Ycf70-like; This is a family of unknown function found in Poaceae.
 1-89 2.57e-55

Uncharacterized Ycf70-like; This is a family of unknown function found in Poaceae.


The actual alignment was detected with superfamily member pfam17382:

Pssm-ID: 340097  Cd Length: 89  Bit Score: 165.60  E-value: 2.57e-55
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21327349    1 MVYGYGKSNMPHPNRKRKGTDTQYDYWEELLVMVSGLYALFCVFLVLFIFFDSFKQESNKLELSGKEEKKKLNGENRLSR 80
Cdd:pfam17382  1 MVYGYGKSNMPHPNRKRKGTDTQYDYWEELLVMVSGLYALFCVFLVLFIFFDSFKQESNKLELSGKEEKKKLNGENRLSR 80


                 ....*....
gi 21327349   81 DIQNLLYIK 89
Cdd:pfam17382 81 DIQNLLYIK 89
 
Name Accession Description Interval E-value
Ycf70 pfam17382
Uncharacterized Ycf70-like; This is a family of unknown function found in Poaceae.
 1-89 2.57e-55

Uncharacterized Ycf70-like; This is a family of unknown function found in Poaceae.


Pssm-ID: 340097  Cd Length: 89  Bit Score: 165.60  E-value: 2.57e-55
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21327349    1 MVYGYGKSNMPHPNRKRKGTDTQYDYWEELLVMVSGLYALFCVFLVLFIFFDSFKQESNKLELSGKEEKKKLNGENRLSR 80
Cdd:pfam17382  1 MVYGYGKSNMPHPNRKRKGTDTQYDYWEELLVMVSGLYALFCVFLVLFIFFDSFKQESNKLELSGKEEKKKLNGENRLSR 80


                 ....*....
gi 21327349   81 DIQNLLYIK 89
Cdd:pfam17382 81 DIQNLLYIK 89
 
Name Accession Description Interval E-value
Ycf70 pfam17382
Uncharacterized Ycf70-like; This is a family of unknown function found in Poaceae.
 1-89 2.57e-55

Uncharacterized Ycf70-like; This is a family of unknown function found in Poaceae.


Pssm-ID: 340097  Cd Length: 89  Bit Score: 165.60  E-value: 2.57e-55
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21327349    1 MVYGYGKSNMPHPNRKRKGTDTQYDYWEELLVMVSGLYALFCVFLVLFIFFDSFKQESNKLELSGKEEKKKLNGENRLSR 80
Cdd:pfam17382  1 MVYGYGKSNMPHPNRKRKGTDTQYDYWEELLVMVSGLYALFCVFLVLFIFFDSFKQESNKLELSGKEEKKKLNGENRLSR 80


                 ....*....
gi 21327349   81 DIQNLLYIK 89
Cdd:pfam17382 81 DIQNLLYIK 89
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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