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Conserved domains on  [gi|2127883941|ref|YP_010214852|]
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ribosomal protein S19 (chloroplast) [Achnatherum pekinense]

Protein Classification

30S ribosomal protein S19( domain architecture ID 10000054)

30S ribosomal protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
rps19 CHL00050
ribosomal protein S19
 1-71 6.99e-40

ribosomal protein S19


:

Pssm-ID: 176991  Cd Length: 92  Bit Score: 125.80  E-value: 6.99e-40
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2127883941  1 MKEEKETIVTWSRASSILPTMVGHTIAIHNGKEHIPIYITNPMVGRKLGEFVPTRHFTSYenARKDTKSRR 71
Cdd:CHL00050  24 TKEEKEIIVTWSRASTIIPTMIGHTIAVHNGKEHIPIYITDQMVGHKLGEFAPTRNFRGH--AKNDKKSRR 92
 
Name Accession Description Interval E-value
rps19 CHL00050
ribosomal protein S19
 1-71 6.99e-40

ribosomal protein S19


Pssm-ID: 176991  Cd Length: 92  Bit Score: 125.80  E-value: 6.99e-40
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2127883941  1 MKEEKETIVTWSRASSILPTMVGHTIAIHNGKEHIPIYITNPMVGRKLGEFVPTRHFTSYenARKDTKSRR 71
Cdd:CHL00050  24 TKEEKEIIVTWSRASTIIPTMIGHTIAVHNGKEHIPIYITDQMVGHKLGEFAPTRNFRGH--AKNDKKSRR 92
rpsS_bact TIGR01050
ribosomal protein S19, bacterial/organelle; The homologous protein of the eukaryotic cytosol ...
 2-71 2.51e-30

ribosomal protein S19, bacterial/organelle; The homologous protein of the eukaryotic cytosol and of the Archaea may be designated S15 or S19. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 130122  Cd Length: 92  Bit Score: 101.67  E-value: 2.51e-30
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2127883941  2 KEEKETIVTWSRASSILPTMVGHTIAIHNGKEHIPIYITNPMVGRKLGEFVPTRHFTSYenARKDTKSRR 71
Cdd:TIGR01050 25 SGKKKVIKTWSRRSTIIPEMIGHTIAVHNGKKFIPVYITEDMVGHKLGEFAPTRTFKGH--AKSDKKSKR 92
Ribosomal_S19 pfam00203
Ribosomal protein S19;
2-60 1.66e-29

Ribosomal protein S19;


Pssm-ID: 459710  Cd Length: 80  Bit Score: 99.39  E-value: 1.66e-29
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 2127883941  2 KEEKETIVTWSRASSILPTMVGHTIAIHNGKEHIPIYITNPMVGRKLGEFVPTRHFTSY 60
Cdd:pfam00203 22 AGKPKVIKTHSRDSTILPEMVGLTFAVYNGKTFVPVEITEEMVGHKLGEFSPTRKFVGH 80
RpsS COG0185
Ribosomal protein S19 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S19 ...
 2-57 1.81e-29

Ribosomal protein S19 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S19 is part of the Pathway/BioSystem: Ribosome 30S subunit


Pssm-ID: 439955  Cd Length: 95  Bit Score: 99.76  E-value: 1.81e-29
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 2127883941  2 KEEKETIVTWSRASSILPTMVGHTIAIHNGKEHIPIYITNPMVGRKLGEFVPTRHF 57
Cdd:COG0185   25 SGEKKVIKTWSRRSTILPEMVGLTIAVHNGKKFVPVYITEEMVGHKLGEFAPTRTF 80
 
Name Accession Description Interval E-value
rps19 CHL00050
ribosomal protein S19
 1-71 6.99e-40

ribosomal protein S19


Pssm-ID: 176991  Cd Length: 92  Bit Score: 125.80  E-value: 6.99e-40
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2127883941  1 MKEEKETIVTWSRASSILPTMVGHTIAIHNGKEHIPIYITNPMVGRKLGEFVPTRHFTSYenARKDTKSRR 71
Cdd:CHL00050  24 TKEEKEIIVTWSRASTIIPTMIGHTIAVHNGKEHIPIYITDQMVGHKLGEFAPTRNFRGH--AKNDKKSRR 92
rpsS_bact TIGR01050
ribosomal protein S19, bacterial/organelle; The homologous protein of the eukaryotic cytosol ...
 2-71 2.51e-30

ribosomal protein S19, bacterial/organelle; The homologous protein of the eukaryotic cytosol and of the Archaea may be designated S15 or S19. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 130122  Cd Length: 92  Bit Score: 101.67  E-value: 2.51e-30
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2127883941  2 KEEKETIVTWSRASSILPTMVGHTIAIHNGKEHIPIYITNPMVGRKLGEFVPTRHFTSYenARKDTKSRR 71
Cdd:TIGR01050 25 SGKKKVIKTWSRRSTIIPEMIGHTIAVHNGKKFIPVYITEDMVGHKLGEFAPTRTFKGH--AKSDKKSKR 92
rpsS PRK00357
30S ribosomal protein S19; Reviewed
 2-68 3.28e-30

30S ribosomal protein S19; Reviewed


Pssm-ID: 178985  Cd Length: 92  Bit Score: 101.41  E-value: 3.28e-30
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2127883941  2 KEEKETIVTWSRASSILPTMVGHTIAIHNGKEHIPIYITNPMVGRKLGEFVPTRHFTSYENARKDTK 68
Cdd:PRK00357  25 SGDKKVIKTWSRRSTILPEFVGLTIAVHNGRKHVPVYVTENMVGHKLGEFAPTRTFRGHAADKKAKR 91
Ribosomal_S19 pfam00203
Ribosomal protein S19;
2-60 1.66e-29

Ribosomal protein S19;


Pssm-ID: 459710  Cd Length: 80  Bit Score: 99.39  E-value: 1.66e-29
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 2127883941  2 KEEKETIVTWSRASSILPTMVGHTIAIHNGKEHIPIYITNPMVGRKLGEFVPTRHFTSY 60
Cdd:pfam00203 22 AGKPKVIKTHSRDSTILPEMVGLTFAVYNGKTFVPVEITEEMVGHKLGEFSPTRKFVGH 80
RpsS COG0185
Ribosomal protein S19 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S19 ...
 2-57 1.81e-29

Ribosomal protein S19 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S19 is part of the Pathway/BioSystem: Ribosome 30S subunit


Pssm-ID: 439955  Cd Length: 95  Bit Score: 99.76  E-value: 1.81e-29
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 2127883941  2 KEEKETIVTWSRASSILPTMVGHTIAIHNGKEHIPIYITNPMVGRKLGEFVPTRHF 57
Cdd:COG0185   25 SGEKKVIKTWSRRSTILPEMVGLTIAVHNGKKFVPVYITEEMVGHKLGEFAPTRTF 80
rps19p PRK04038
30S ribosomal protein S19P; Provisional
 1-56 2.70e-15

30S ribosomal protein S19P; Provisional


Pssm-ID: 235209  Cd Length: 134  Bit Score: 64.89  E-value: 2.70e-15
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 2127883941   1 MKEEKETIVTWSRASSILPTMVGHTIAIHNGKEHIPIYITNPMVGRKLGEFVPTRH 56
Cdd:PRK04038   58 EKKKGRVIRTHVRDMIILPEMVGLTIAVYNGKEFVEVEIVPEMIGHYLGEFALTRK 113
uS19_arch TIGR01025
ribosomal protein uS19, eukaryotic/archaeal form; This model represents eukaryotic ribosomal ...
 3-57 3.78e-12

ribosomal protein uS19, eukaryotic/archaeal form; This model represents eukaryotic ribosomal protein uS19 (previously S15) and its archaeal equivalent. It excludes bacterial and organellar ribosomal protein S19. The nomenclature for the archaeal members is unresolved and given variously as S19 (after the more distant bacterial homologs) or S15. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 273400  Cd Length: 135  Bit Score: 56.78  E-value: 3.78e-12
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 2127883941   3 EEKETIVTWSRASSILPTMVGHTIAIHNGKEHIPIYITNPMVGRKLGEFVPTRHF 57
Cdd:TIGR01025  61 EKPEVIRTHCRDMIILPEMVGSTVGVYNGKEFVQVEIKPEMIGHYLGEFSITRKP 115
PTZ00096 PTZ00096
40S ribosomal protein S15; Provisional
 4-56 7.05e-10

40S ribosomal protein S15; Provisional


Pssm-ID: 185442  Cd Length: 143  Bit Score: 51.18  E-value: 7.05e-10
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 2127883941   4 EKETIV-TWSRASSILPTMVGHTIAIHNGKEHIPIYITNPMVGRKLGEFV----PTRH 56
Cdd:PTZ00096   71 EKPKAVkTHLRDMIIVPEMVGSVVGVYNGKQFNNVEIKPEMIGHYLGEFSitykPVRH 128
PLN03147 PLN03147
ribosomal protein S19; Provisional
 1-55 1.05e-09

ribosomal protein S19; Provisional


Pssm-ID: 178692  Cd Length: 92  Bit Score: 49.60  E-value: 1.05e-09
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 2127883941  1 MKEEKETIVT---WSRASSILPTMVGHTIAIHNGKEHIPIYITNPMVGRKLGEFVPTR 55
Cdd:PLN03147  16 IKKKRDLLLGkkiWSHRSSILPDFVDCSVLIYNGKTHIRCKITEGKVGHKFGEFAFTR 73
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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