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Conserved domains on  [gi|2127873184|ref|YP_010204200|]
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NADH dehydrogenase subunit 4L (mitochondrion) [Ahnfeltia fastigiata]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK05715 PRK05715
NADH-quinone oxidoreductase subunit NuoK;
1-101 2.90e-24

NADH-quinone oxidoreductase subunit NuoK;


:

Pssm-ID: 180218  Cd Length: 100  Bit Score: 87.93  E-value: 2.90e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2127873184   1 MLNQINCISISSLLFLISILGIFLnQKNILVMLMSLEMMFLAVSFNLIFSSIYLDDIVGQVFSLLILTVAAAESSIGLAI 80
Cdd:PRK05715    1 MIPLQHYLILAAILFCIGLVGLLL-RRNAIVVLMSIELMLNAVNLNFVAFSSYLGDLDGQVFAFFVITVAAAEAAIGLAI 79

                          90       100
                  ....*....|....*....|.
gi 2127873184  81 LVVYYRIRGTITVELMSLTKG 101
Cdd:PRK05715   80 LLQLYRNRGTIDVDDLNELKG 100
 
Name Accession Description Interval E-value
PRK05715 PRK05715
NADH-quinone oxidoreductase subunit NuoK;
1-101 2.90e-24

NADH-quinone oxidoreductase subunit NuoK;


Pssm-ID: 180218  Cd Length: 100  Bit Score: 87.93  E-value: 2.90e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2127873184   1 MLNQINCISISSLLFLISILGIFLnQKNILVMLMSLEMMFLAVSFNLIFSSIYLDDIVGQVFSLLILTVAAAESSIGLAI 80
Cdd:PRK05715    1 MIPLQHYLILAAILFCIGLVGLLL-RRNAIVVLMSIELMLNAVNLNFVAFSSYLGDLDGQVFAFFVITVAAAEAAIGLAI 79

                          90       100
                  ....*....|....*....|.
gi 2127873184  81 LVVYYRIRGTITVELMSLTKG 101
Cdd:PRK05715   80 LLQLYRNRGTIDVDDLNELKG 100
NuoK COG0713
NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K) [Energy production and conversion]; ...
 10-101 9.73e-22

NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440477  Cd Length: 99  Bit Score: 81.65  E-value: 9.73e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2127873184  10 ISSLLFLISILGIFLnQKNILVMLMSLEMMFLAVSFNLIFSSIYLDDIVGQVFSLLILTVAAAESSIGLAILVVYYRIRG 89
Cdd:COG0713     9 LAAILFAIGLYGVLT-RRNLIVVLMSIELMLNAVNLNLVAFSRYLGDLDGQVFALFVIAVAAAEVAVGLAIIVALYRNRG 87

                          90
                  ....*....|..
gi 2127873184  90 TITVELMSLTKG 101
Cdd:COG0713    88 TIDVDDLNELKG 99
Oxidored_q2 pfam00420
NADH-ubiquinone/plastoquinone oxidoreductase chain 4L;
10-101 4.32e-12

NADH-ubiquinone/plastoquinone oxidoreductase chain 4L;


Pssm-ID: 425672  Cd Length: 95  Bit Score: 56.80  E-value: 4.32e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2127873184  10 ISSLLFLISILGIFLnQKNILVMLMSLEMMFLAVSFNLIFSSIYLDDIVGQVFSLLILTVAAAESSIGLAILVVYYRIRG 89
Cdd:pfam00420   5 LSGLLFLIGLYGLLL-RRNLLRVLLSLELMLNAVNLALVLFGRLTADPLPQALILTAIVIAAAEAAVGLALLVRIYRTHG 83

                          90
                  ....*....|..
gi 2127873184  90 TITVELMSLTKG 101
Cdd:pfam00420  84 TDDVDSLNLLKG 95
 
Name Accession Description Interval E-value
PRK05715 PRK05715
NADH-quinone oxidoreductase subunit NuoK;
1-101 2.90e-24

NADH-quinone oxidoreductase subunit NuoK;


Pssm-ID: 180218  Cd Length: 100  Bit Score: 87.93  E-value: 2.90e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2127873184   1 MLNQINCISISSLLFLISILGIFLnQKNILVMLMSLEMMFLAVSFNLIFSSIYLDDIVGQVFSLLILTVAAAESSIGLAI 80
Cdd:PRK05715    1 MIPLQHYLILAAILFCIGLVGLLL-RRNAIVVLMSIELMLNAVNLNFVAFSSYLGDLDGQVFAFFVITVAAAEAAIGLAI 79

                          90       100
                  ....*....|....*....|.
gi 2127873184  81 LVVYYRIRGTITVELMSLTKG 101
Cdd:PRK05715   80 LLQLYRNRGTIDVDDLNELKG 100
NuoK COG0713
NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K) [Energy production and conversion]; ...
 10-101 9.73e-22

NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440477  Cd Length: 99  Bit Score: 81.65  E-value: 9.73e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2127873184  10 ISSLLFLISILGIFLnQKNILVMLMSLEMMFLAVSFNLIFSSIYLDDIVGQVFSLLILTVAAAESSIGLAILVVYYRIRG 89
Cdd:COG0713     9 LAAILFAIGLYGVLT-RRNLIVVLMSIELMLNAVNLNLVAFSRYLGDLDGQVFALFVIAVAAAEVAVGLAIIVALYRNRG 87

                          90
                  ....*....|..
gi 2127873184  90 TITVELMSLTKG 101
Cdd:COG0713    88 TIDVDDLNELKG 99
ND4L MTH00180
NADH dehydrogenase subunit 4L; Provisional
 7-101 1.86e-19

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 177231  Cd Length: 99  Bit Score: 75.84  E-value: 1.86e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2127873184   7 CISISSLLFLISILGIFLNQKNILVMLMSLEMMFLAVSFNLIFSSIYLDDIVGQVFSLLILTVAAAESSIGLAILVVYYR 86
Cdd:MTH00180    5 YLTVGIILFILGVLGIVLNRSNLIIMLMSIELMLLAISLLFLINSVAIDNLIGQIFTIMILTVAAAESAIGLAILVAYYR 84

                          90
                  ....*....|....*
gi 2127873184  87 IRGTITVELMSLTKG 101
Cdd:MTH00180   85 IRGTIAVKSLNLLRG 99
ND4L MTH00001
NADH dehydrogenase subunit 4L; Provisional
 8-101 3.70e-16

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 177099  Cd Length: 99  Bit Score: 67.40  E-value: 3.70e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2127873184   8 ISISSLLFLISILGIFLNQKNILVMLMSLEMMFLAVSFNLIFSSIYLDDIVGQVFSLLILTVAAAESSIGLAILVVYYRI 87
Cdd:MTH00001    6 LILVVILFLLGIWGIILNRGHFIIMLVSIELVLLSTFFLFLINSIEIDLLIEQIFTIMGLTIAAAESAIGLAIMVAYYRI 85

                          90
                  ....*....|....
gi 2127873184  88 RGTITVELMSLTKG 101
Cdd:MTH00001   86 RGTISLKSLNSLRG 99
Oxidored_q2 pfam00420
NADH-ubiquinone/plastoquinone oxidoreductase chain 4L;
10-101 4.32e-12

NADH-ubiquinone/plastoquinone oxidoreductase chain 4L;


Pssm-ID: 425672  Cd Length: 95  Bit Score: 56.80  E-value: 4.32e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2127873184  10 ISSLLFLISILGIFLnQKNILVMLMSLEMMFLAVSFNLIFSSIYLDDIVGQVFSLLILTVAAAESSIGLAILVVYYRIRG 89
Cdd:pfam00420   5 LSGLLFLIGLYGLLL-RRNLLRVLLSLELMLNAVNLALVLFGRLTADPLPQALILTAIVIAAAEAAVGLALLVRIYRTHG 83

                          90
                  ....*....|..
gi 2127873184  90 TITVELMSLTKG 101
Cdd:pfam00420  84 TDDVDSLNLLKG 95
ndhE CHL00015
NADH dehydrogenase subunit 4L
 10-100 4.85e-12

NADH dehydrogenase subunit 4L


Pssm-ID: 176958  Cd Length: 101  Bit Score: 56.94  E-value: 4.85e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2127873184  10 ISSLLFLISILGiFLNQKNILVMLMSLEMMFLAVSFNLIFSSIYLD--DIVGQVFSLLILTVAAAESSIGLAILVVYYRI 87
Cdd:CHL00015    9 LSAYLFSIGIYG-LITSRNMVRALMCLELILNAVNINFVTFSDFFDsrQLKGDIFSIFVIAIAAAEAAIGLAIVSSIYRN 87

                          90
                  ....*....|...
gi 2127873184  88 RGTITVELMSLTK 100
Cdd:CHL00015   88 RKSTRINQSNLLK 100
ND4L MTH00192
NADH dehydrogenase subunit 4L; Provisional
 10-101 2.13e-10

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 177240  Cd Length: 99  Bit Score: 52.62  E-value: 2.13e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2127873184  10 ISSLLFLISILGIFLNQKNILVMLMSLEMMFLAVSFNLIFSSIYLDDIVGQVFSLLILTVAAAESSIGLAILVVYYRIRG 89
Cdd:MTH00192    8 VSIILFTTGVSGIIINKNNIILILMSIELILLAISYLLIVYSVTLDNLLGIIFSLMVLTVAAAESAIGLAILVAYFRLTG 87

                          90
                  ....*....|..
gi 2127873184  90 TITVELMSLTKG 101
Cdd:MTH00192   88 TITIKALNLLRG 99
ND4L MTH00181
NADH dehydrogenase subunit 4L; Provisional
 12-90 6.53e-05

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 214450  Cd Length: 93  Bit Score: 38.39  E-value: 6.53e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2127873184  12 SLLFLISILGIFLNQKNILVMLMSLEMMFLAVSFNLIFSSIYLDDIVGQVFSLLILTVAAAESSIGLAILVVYYRIRGT 90
Cdd:MTH00181    6 ISAFILLLLGLSLYKTHLLSLLLCLEGMMLFLFLLLALFSLLSSSSSMLMFGLILLTFSACEAVLGLSLLVATNRTHGS 84
ND4L MTH00125
NADH dehydrogenase subunit 4L; Provisional
 15-90 2.92e-04

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 177184  Cd Length: 98  Bit Score: 36.75  E-value: 2.92e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2127873184  15 FLISILGIFLNQKNILVMLMSLEMMFLAVSFNLIFSSIYLDDIVGQVFSLLILTVAAAESSIGLAILVVYYRIRGT 90
Cdd:MTH00125   12 FMLSLLGLSFHRTHLMSALLCLESMMLSLFIMLSLWPITTQTPSFTPMPIILLTFSACEAGTGLALLVATTRTHGS 87
ND4L MTH00149
NADH dehydrogenase subunit 4L; Provisional
 10-100 4.08e-04

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 214434  Cd Length: 97  Bit Score: 36.36  E-value: 4.08e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2127873184  10 ISSLLFLISILGIFLNQKNILVMLMSLEMMFLAVSFnLIFSSIYLDDIVGQVFsLLILTVAAAESSIGLAILVVYYRIRG 89
Cdd:MTH00149    8 LSLFGFLMGVFALLFQYKHLLSILLSLEALMLSLLV-MMFSSSGLISFSSYLF-LIILTFGACEASLGLSLLVSLIRLHG 85

                          90
                  ....*....|.
gi 2127873184  90 TITVELMSLTK 100
Cdd:MTH00149   86 NDYVSSLSSLK 96
ND4L MTH00188
NADH dehydrogenase subunit 4L; Provisional
 5-100 9.50e-04

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 177237  Cd Length: 97  Bit Score: 35.34  E-value: 9.50e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2127873184   5 INCISISSLLFLISILGIFLNQKNILVMLMSLEMMFLAVSFNLIFSSIYLDdiVGQVFSLLILTVAAAESSIGLAILVVY 84
Cdd:MTH00188    3 FSMILVILLFVVLGLFTFLLNRKHLLMLLLSLEAIMLSLFWFLLVGLSYME--KELYLSLVLLTFAACEASVGLALLVSL 80

                          90
                  ....*....|....*.
gi 2127873184  85 YRIRGTITVELMSLTK 100
Cdd:MTH00188   81 IRSHGSDYVSSLNLIK 96
ND4L MTH00067
NADH dehydrogenase subunit 4L; Provisional
 15-90 5.00e-03

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 177139  Cd Length: 98  Bit Score: 33.42  E-value: 5.00e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2127873184  15 FLISILGIFLNQKNILVMLMSLEMMFLAVSFNLIFSSIYLDDIVGQVFSLLILTVAAAESSIGLAILVVYYRIRGT 90
Cdd:MTH00067   12 FLLGLMGLAFHRTHLLSALLCLEGMMLSLFIALSLWSTQFESLSYFSLPMFMLTFSACEASTGLALMVATTRTHGT 87
ND4L MTH00043
NADH dehydrogenase subunit 4L; Validated
 10-86 6.82e-03

NADH dehydrogenase subunit 4L; Validated


Pssm-ID: 214410  Cd Length: 98  Bit Score: 32.97  E-value: 6.82e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2127873184  10 ISSLLFLISILGIFLNQKNILVMLMSLEMMFLAVSFNLIFSSIYLDDIVGQVFSLLILTVAAAESSIGLAILVVYYR 86
Cdd:MTH00043    7 IILSSFFLGLLGILINRLHLLSILLCLELLLISLFLNISIWSLNYGNFSNLSFSLLLLTLSACEASIGLSLMVLLSR 83
ND4L MTH00162
NADH dehydrogenase subunit 4L; Provisional
 8-82 7.38e-03

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 177218  Cd Length: 89  Bit Score: 32.82  E-value: 7.38e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2127873184   8 ISISSLLFLISILGIFLNQKNILVMLMSLEMMFLAVSFNLIFSSIYLDdiVGQVFSLLILTVAAAESSIGLAILV 82
Cdd:MTH00162    4 LLIFLFMFFSGLLVFLSKRKHLLLMLLSLEFMVLSLFFLLFLYLSFFN--YELYFLLFFLTFSVCEGALGLSILV 76
ND4L MTH00126
NADH dehydrogenase subunit 4L; Provisional
 12-90 7.81e-03

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 177185  Cd Length: 98  Bit Score: 33.01  E-value: 7.81e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2127873184  12 SLLFLISILGIFLNQKNILVMLMSLEMMFLAVSFNLIFSSIYLDDIVGQVFSLLILTVAAAESSIGLAILVVYYRIRGT 90
Cdd:MTH00126    9 SSAFILGLMGLAFHRTHLLSALLCLEGMMLSLFIALSLWALQLESTSFSAAPMLLLAFSACEASAGLALLVATARTHGT 87
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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