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Conserved domains on  [gi|2127873160|ref|YP_010204016|]
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photosystem I subunit XII (plastid) [Ahnfeltia fastigiata]

Protein Classification

photosystem I reaction center subunit XII( domain architecture ID 10000152)

photosystem I reaction center subunit XII (PsaM) forms part of the photosystem I complex and its binding is stabilised by PsaI

Gene Ontology:  GO:0015979|GO:0009522
PubMed:  11687207|3333014

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
psaM CHL00190
photosystem I subunit XII; Provisional
 1-30 1.85e-06

photosystem I subunit XII; Provisional


:

Pssm-ID: 177090  Cd Length: 30  Bit Score: 37.85  E-value: 1.85e-06
                         10        20        30
                 ....*....|....*....|....*....|
gi 2127873160  1 MISDSQIFVALLFALVSAVVAIRLGTDLYQ 30
Cdd:CHL00190   1 MISDSQIFIALFLALTTGILAIRLGTALYQ 30
 
Name Accession Description Interval E-value
psaM CHL00190
photosystem I subunit XII; Provisional
 1-30 1.85e-06

photosystem I subunit XII; Provisional


Pssm-ID: 177090  Cd Length: 30  Bit Score: 37.85  E-value: 1.85e-06
                         10        20        30
                 ....*....|....*....|....*....|
gi 2127873160  1 MISDSQIFVALLFALVSAVVAIRLGTDLYQ 30
Cdd:CHL00190   1 MISDSQIFIALFLALTTGILAIRLGTALYQ 30
PS_I_psaM TIGR03053
photosystem I reaction center subunit XII; Members of this protein family are PsaM, which is ...
 2-30 4.63e-05

photosystem I reaction center subunit XII; Members of this protein family are PsaM, which is subunit XII of the photosystem I reaction center. This protein is found in both the Cyanobacteria and the chloroplasts of plants, but is absent from non-oxygenic photosynthetic bacteria such as Rhodobacter sphaeroides. Species that contain photosystem I also contain photosystem II, which splits water and releases molecular oxygen. The seed alignment for this model includes sequences from pfam07465 and additional sequences, as from Prochlorococcus. [Energy metabolism, Photosynthesis]


Pssm-ID: 274411  Cd Length: 29  Bit Score: 34.34  E-value: 4.63e-05
                         10        20
                 ....*....|....*....|....*....
gi 2127873160  2 ISDSQIFVALLFALVSAVVAIRLGTDLYQ 30
Cdd:TIGR03053  1 ISDSQIFIALVIALIAGILALRLGKELYR 29
PsaM pfam07465
Photosystem I protein M (PsaM); This family consists of several plant and cyanobacterial ...
 2-29 2.31e-03

Photosystem I protein M (PsaM); This family consists of several plant and cyanobacterial photosystem I protein M (PsaM) sequences. PsaM forms part of the photosystem I complex and its binding is stabilized by PsaI.


Pssm-ID: 429475  Cd Length: 28  Bit Score: 30.18  E-value: 2.31e-03
                         10        20
                 ....*....|....*....|....*...
gi 2127873160  2 ISDSQIFVALLFALVSAVVAIRLGTDLY 29
Cdd:pfam07465  1 LSDTQVFIALVVALLPGILALRLGTALY 28
 
Name Accession Description Interval E-value
psaM CHL00190
photosystem I subunit XII; Provisional
 1-30 1.85e-06

photosystem I subunit XII; Provisional


Pssm-ID: 177090  Cd Length: 30  Bit Score: 37.85  E-value: 1.85e-06
                         10        20        30
                 ....*....|....*....|....*....|
gi 2127873160  1 MISDSQIFVALLFALVSAVVAIRLGTDLYQ 30
Cdd:CHL00190   1 MISDSQIFIALFLALTTGILAIRLGTALYQ 30
PS_I_psaM TIGR03053
photosystem I reaction center subunit XII; Members of this protein family are PsaM, which is ...
 2-30 4.63e-05

photosystem I reaction center subunit XII; Members of this protein family are PsaM, which is subunit XII of the photosystem I reaction center. This protein is found in both the Cyanobacteria and the chloroplasts of plants, but is absent from non-oxygenic photosynthetic bacteria such as Rhodobacter sphaeroides. Species that contain photosystem I also contain photosystem II, which splits water and releases molecular oxygen. The seed alignment for this model includes sequences from pfam07465 and additional sequences, as from Prochlorococcus. [Energy metabolism, Photosynthesis]


Pssm-ID: 274411  Cd Length: 29  Bit Score: 34.34  E-value: 4.63e-05
                         10        20
                 ....*....|....*....|....*....
gi 2127873160  2 ISDSQIFVALLFALVSAVVAIRLGTDLYQ 30
Cdd:TIGR03053  1 ISDSQIFIALVIALIAGILALRLGKELYR 29
PsaM pfam07465
Photosystem I protein M (PsaM); This family consists of several plant and cyanobacterial ...
 2-29 2.31e-03

Photosystem I protein M (PsaM); This family consists of several plant and cyanobacterial photosystem I protein M (PsaM) sequences. PsaM forms part of the photosystem I complex and its binding is stabilized by PsaI.


Pssm-ID: 429475  Cd Length: 28  Bit Score: 30.18  E-value: 2.31e-03
                         10        20
                 ....*....|....*....|....*...
gi 2127873160  2 ISDSQIFVALLFALVSAVVAIRLGTDLY 29
Cdd:pfam07465  1 LSDTQVFIALVVALLPGILALRLGTALY 28
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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