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Conserved domains on  [gi|2127873155|ref|YP_010204006|]
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photosystem II protein psb30 (plastid) [Ahnfeltia fastigiata]

Protein Classification

photosystem II reaction center protein Ycf12( domain architecture ID 10000149)

photosystem II reaction center protein Ycf12 is a core subunit of photosystem II (PSII), which probably helps stabilize the reaction center

Gene Ontology:  GO:0015979|GO:0009523|GO:0016020

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ycf12 CHL00184
Ycf12; Provisional
 2-34 1.84e-06

Ycf12; Provisional


:

Pssm-ID: 177086  Cd Length: 33  Bit Score: 38.46  E-value: 1.84e-06
                         10        20        30
                 ....*....|....*....|....*....|...
gi 2127873155  2 VNWQVIGQLVSLGVIILIGPAVIILLSFKKGNL 34
Cdd:CHL00184   1 MNLEVIAQLTSLALIVLAGPLVIVLLALRKGNL 33
 
Name Accession Description Interval E-value
ycf12 CHL00184
Ycf12; Provisional
 2-34 1.84e-06

Ycf12; Provisional


Pssm-ID: 177086  Cd Length: 33  Bit Score: 38.46  E-value: 1.84e-06
                         10        20        30
                 ....*....|....*....|....*....|...
gi 2127873155  2 VNWQVIGQLVSLGVIILIGPAVIILLSFKKGNL 34
Cdd:CHL00184   1 MNLEVIAQLTSLALIVLAGPLVIVLLALRKGNL 33
PSII_Ycf12 pfam05969
Photosystem II complex subunit Ycf12; Ycf12 has been identified as a core subunit in the ...
 3-34 1.99e-05

Photosystem II complex subunit Ycf12; Ycf12 has been identified as a core subunit in the photosystem II (PSII) complex. PsbZ has been shown to be required for the association of PsbK and Ycf12 with PSII.


Pssm-ID: 461789  Cd Length: 32  Bit Score: 35.73  E-value: 1.99e-05
                         10        20        30
                 ....*....|....*....|....*....|..
gi 2127873155  3 NWQVIGQLVSLGVIILIGPAVIILLSFKKGNL 34
Cdd:pfam05969  1 NFEVIAQLTALALIVLAGPAVIVLLALRGGNL 32
 
Name Accession Description Interval E-value
ycf12 CHL00184
Ycf12; Provisional
 2-34 1.84e-06

Ycf12; Provisional


Pssm-ID: 177086  Cd Length: 33  Bit Score: 38.46  E-value: 1.84e-06
                         10        20        30
                 ....*....|....*....|....*....|...
gi 2127873155  2 VNWQVIGQLVSLGVIILIGPAVIILLSFKKGNL 34
Cdd:CHL00184   1 MNLEVIAQLTSLALIVLAGPLVIVLLALRKGNL 33
PSII_Ycf12 pfam05969
Photosystem II complex subunit Ycf12; Ycf12 has been identified as a core subunit in the ...
 3-34 1.99e-05

Photosystem II complex subunit Ycf12; Ycf12 has been identified as a core subunit in the photosystem II (PSII) complex. PsbZ has been shown to be required for the association of PsbK and Ycf12 with PSII.


Pssm-ID: 461789  Cd Length: 32  Bit Score: 35.73  E-value: 1.99e-05
                         10        20        30
                 ....*....|....*....|....*....|..
gi 2127873155  3 NWQVIGQLVSLGVIILIGPAVIILLSFKKGNL 34
Cdd:pfam05969  1 NFEVIAQLTALALIVLAGPAVIVLLALRGGNL 32
PRK13686 PRK13686
photosystem II reaction center protein Ycf12;
2-34 3.24e-03

photosystem II reaction center protein Ycf12;


Pssm-ID: 237469  Cd Length: 43  Bit Score: 30.42  E-value: 3.24e-03
                         10        20        30
                 ....*....|....*....|....*....|...
gi 2127873155  2 VNWQVIGQLVSLGVIILIGPAVIILLSFKKGNL 34
Cdd:PRK13686  11 INLEVIFQLTFVALIVIAGPVVIFLLAFRGGDL 43
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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