NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|2127873152|ref|YP_010204096|]
View 

ribosomal protein L36 (plastid) [Ahnfeltia fastigiata]

Protein Classification

ribosomal protein bL36( domain architecture ID 10011449)

ribosomal protein bL36 is a component of the large ribosomal subunit 50S

Gene Ontology:  GO:0006412|GO:0003735
PubMed:  24524803

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
rpmJ PRK00465
50S ribosomal protein L36; Reviewed
 1-37 3.22e-11

50S ribosomal protein L36; Reviewed


:

Pssm-ID: 179039  Cd Length: 37  Bit Score: 50.34  E-value: 3.22e-11
                         10        20        30
                 ....*....|....*....|....*....|....*..
gi 2127873152  1 MKVRPSVRKMCEKCRIIRRDRRVMVICENPKHKQRQG 37
Cdd:PRK00465   1 MKVRASVKKICEKCKVIKRKGVVRVICENPKHKQRQG 37
 
Name Accession Description Interval E-value
rpmJ PRK00465
50S ribosomal protein L36; Reviewed
 1-37 3.22e-11

50S ribosomal protein L36; Reviewed


Pssm-ID: 179039  Cd Length: 37  Bit Score: 50.34  E-value: 3.22e-11
                         10        20        30
                 ....*....|....*....|....*....|....*..
gi 2127873152  1 MKVRPSVRKMCEKCRIIRRDRRVMVICENPKHKQRQG 37
Cdd:PRK00465   1 MKVRASVKKICEKCKVIKRKGVVRVICENPKHKQRQG 37
RpmJ COG0257
Ribosomal protein L36 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L36 ...
 1-37 2.55e-09

Ribosomal protein L36 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L36 is part of the Pathway/BioSystem: Ribosome 50S subunit


Pssm-ID: 440027  Cd Length: 38  Bit Score: 45.50  E-value: 2.55e-09
                         10        20        30
                 ....*....|....*....|....*....|....*...
gi 2127873152  1 MKVRPSVRKMCEKCRIIRRDRRVMVICE-NPKHKQRQG 37
Cdd:COG0257    1 MKVRASVKKICRDCKVVRRKGRVYVICKkNPRHKQRQG 38
Ribosomal_L36 pfam00444
Ribosomal protein L36;
1-37 4.62e-09

Ribosomal protein L36;


Pssm-ID: 459811  Cd Length: 38  Bit Score: 45.19  E-value: 4.62e-09
                         10        20        30
                 ....*....|....*....|....*....|....*...
gi 2127873152  1 MKVRPSVRKMCEKCRIIRRDRRVMVIC-ENPKHKQRQG 37
Cdd:pfam00444  1 MKVRSSLKKRCEDCKVVRRKGRVYVICkKNPRHKQRQG 38
rpmJ_bact TIGR01022
ribosomal protein L36, bacterial type; Proteins found by this model occur exclusively in ...
 1-37 8.96e-08

ribosomal protein L36, bacterial type; Proteins found by this model occur exclusively in bacteria and organelles. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 130094  Cd Length: 37  Bit Score: 41.70  E-value: 8.96e-08
                         10        20        30
                 ....*....|....*....|....*....|....*..
gi 2127873152  1 MKVRPSVRKMCEKCRIIRRDRRVMVICENPKHKQRQG 37
Cdd:TIGR01022  1 MKVRASVKKICEKCKIIKRKGVVRVICKNPKHKQRQG 37
 
Name Accession Description Interval E-value
rpmJ PRK00465
50S ribosomal protein L36; Reviewed
 1-37 3.22e-11

50S ribosomal protein L36; Reviewed


Pssm-ID: 179039  Cd Length: 37  Bit Score: 50.34  E-value: 3.22e-11
                         10        20        30
                 ....*....|....*....|....*....|....*..
gi 2127873152  1 MKVRPSVRKMCEKCRIIRRDRRVMVICENPKHKQRQG 37
Cdd:PRK00465   1 MKVRASVKKICEKCKVIKRKGVVRVICENPKHKQRQG 37
RpmJ COG0257
Ribosomal protein L36 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L36 ...
 1-37 2.55e-09

Ribosomal protein L36 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L36 is part of the Pathway/BioSystem: Ribosome 50S subunit


Pssm-ID: 440027  Cd Length: 38  Bit Score: 45.50  E-value: 2.55e-09
                         10        20        30
                 ....*....|....*....|....*....|....*...
gi 2127873152  1 MKVRPSVRKMCEKCRIIRRDRRVMVICE-NPKHKQRQG 37
Cdd:COG0257    1 MKVRASVKKICRDCKVVRRKGRVYVICKkNPRHKQRQG 38
Ribosomal_L36 pfam00444
Ribosomal protein L36;
1-37 4.62e-09

Ribosomal protein L36;


Pssm-ID: 459811  Cd Length: 38  Bit Score: 45.19  E-value: 4.62e-09
                         10        20        30
                 ....*....|....*....|....*....|....*...
gi 2127873152  1 MKVRPSVRKMCEKCRIIRRDRRVMVIC-ENPKHKQRQG 37
Cdd:pfam00444  1 MKVRSSLKKRCEDCKVVRRKGRVYVICkKNPRHKQRQG 38
rpmJ_bact TIGR01022
ribosomal protein L36, bacterial type; Proteins found by this model occur exclusively in ...
 1-37 8.96e-08

ribosomal protein L36, bacterial type; Proteins found by this model occur exclusively in bacteria and organelles. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 130094  Cd Length: 37  Bit Score: 41.70  E-value: 8.96e-08
                         10        20        30
                 ....*....|....*....|....*....|....*..
gi 2127873152  1 MKVRPSVRKMCEKCRIIRRDRRVMVICENPKHKQRQG 37
Cdd:TIGR01022  1 MKVRASVKKICEKCKIIKRKGVVRVICKNPKHKQRQG 37
rpl36 CHL00029
ribosomal protein L36
 1-26 8.20e-04

ribosomal protein L36


Pssm-ID: 176970  Cd Length: 26  Bit Score: 31.78  E-value: 8.20e-04
                         10        20
                 ....*....|....*....|....*.
gi 2127873152  1 MKVRPSVRKMCEKCRIIRRDRRVMVI 26
Cdd:CHL00029   1 MKIRASVRKICEKCRLIRRRGRIFVI 26
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH