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Conserved domains on  [gi|2127873151|ref|YP_010204167|]
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photosystem II protein I (plastid) [Ahnfeltia fastigiata]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PsbI super family cl27410
Photosystem II reaction centre I protein (PSII 4.8 kDa protein); This family consists of ...
 1-36 7.61e-08

Photosystem II reaction centre I protein (PSII 4.8 kDa protein); This family consists of various Photosystem II (PSII) reaction centre I proteins or PSII 4.8 kDa proteins, PsbI, from the chloroplast genome of many plants and Cyanobacteria. PsbI is a small, integral membrane component of PSII the role of which is not clear. Synechocystis mutants lacking PsbI have 20-30% loss of PSII activity however the PSII complex is not destabilized.


The actual alignment was detected with superfamily member CHL00024:

Pssm-ID: 474917  Cd Length: 36  Bit Score: 41.97  E-value: 7.61e-08
                         10        20        30
                 ....*....|....*....|....*....|....*.
gi 2127873151  1 MFTLKILVYTTVIFFISLFFFGFLSNDPSRNPNRKD 36
Cdd:CHL00024   1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGRKE 36
 
Name Accession Description Interval E-value
psbI CHL00024
photosystem II protein I
 1-36 7.61e-08

photosystem II protein I


Pssm-ID: 176966  Cd Length: 36  Bit Score: 41.97  E-value: 7.61e-08
                         10        20        30
                 ....*....|....*....|....*....|....*.
gi 2127873151  1 MFTLKILVYTTVIFFISLFFFGFLSNDPSRNPNRKD 36
Cdd:CHL00024   1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGRKE 36
PsbI pfam02532
Photosystem II reaction centre I protein (PSII 4.8 kDa protein); This family consists of ...
 1-36 2.68e-07

Photosystem II reaction centre I protein (PSII 4.8 kDa protein); This family consists of various Photosystem II (PSII) reaction centre I proteins or PSII 4.8 kDa proteins, PsbI, from the chloroplast genome of many plants and Cyanobacteria. PsbI is a small, integral membrane component of PSII the role of which is not clear. Synechocystis mutants lacking PsbI have 20-30% loss of PSII activity however the PSII complex is not destabilized.


Pssm-ID: 426818  Cd Length: 36  Bit Score: 40.83  E-value: 2.68e-07
                         10        20        30
                 ....*....|....*....|....*....|....*.
gi 2127873151  1 MFTLKILVYTTVIFFISLFFFGFLSNDPSRNPNRKD 36
Cdd:pfam02532  1 MLTLKIVVYIVVIFFVSLFIFGFLSNDPSRNPGRKD 36
PsbI COG5723
Photosystem II reaction center protein I, PsbI, oxygen-evolving center [Energy production and ...
 1-38 3.81e-07

Photosystem II reaction center protein I, PsbI, oxygen-evolving center [Energy production and conversion]; Photosystem II reaction center protein I, PsbI, oxygen-evolving center is part of the Pathway/BioSystem: Photosystem II


Pssm-ID: 444433  Cd Length: 38  Bit Score: 40.43  E-value: 3.81e-07
                         10        20        30
                 ....*....|....*....|....*....|....*...
gi 2127873151  1 MFTLKILVYTTVIFFISLFFFGFLSNDPSRNPNRKDLE 38
Cdd:COG5723    1 MLTLKIVVYIVVLFFVGLFIFGFLSNDPARNPGRKDLE 38
 
Name Accession Description Interval E-value
psbI CHL00024
photosystem II protein I
 1-36 7.61e-08

photosystem II protein I


Pssm-ID: 176966  Cd Length: 36  Bit Score: 41.97  E-value: 7.61e-08
                         10        20        30
                 ....*....|....*....|....*....|....*.
gi 2127873151  1 MFTLKILVYTTVIFFISLFFFGFLSNDPSRNPNRKD 36
Cdd:CHL00024   1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGRKE 36
PsbI pfam02532
Photosystem II reaction centre I protein (PSII 4.8 kDa protein); This family consists of ...
 1-36 2.68e-07

Photosystem II reaction centre I protein (PSII 4.8 kDa protein); This family consists of various Photosystem II (PSII) reaction centre I proteins or PSII 4.8 kDa proteins, PsbI, from the chloroplast genome of many plants and Cyanobacteria. PsbI is a small, integral membrane component of PSII the role of which is not clear. Synechocystis mutants lacking PsbI have 20-30% loss of PSII activity however the PSII complex is not destabilized.


Pssm-ID: 426818  Cd Length: 36  Bit Score: 40.83  E-value: 2.68e-07
                         10        20        30
                 ....*....|....*....|....*....|....*.
gi 2127873151  1 MFTLKILVYTTVIFFISLFFFGFLSNDPSRNPNRKD 36
Cdd:pfam02532  1 MLTLKIVVYIVVIFFVSLFIFGFLSNDPSRNPGRKD 36
psbI PRK02655
photosystem II reaction center protein I;
1-38 3.18e-07

photosystem II reaction center protein I;


Pssm-ID: 179459  Cd Length: 38  Bit Score: 40.47  E-value: 3.18e-07
                         10        20        30
                 ....*....|....*....|....*....|....*...
gi 2127873151  1 MFTLKILVYTTVIFFISLFFFGFLSNDPSRNPNRKDLE 38
Cdd:PRK02655   1 MLALKISVYIVVFFFVGLFVFGFLSSDPTRNPGRKDLE 38
PsbI COG5723
Photosystem II reaction center protein I, PsbI, oxygen-evolving center [Energy production and ...
 1-38 3.81e-07

Photosystem II reaction center protein I, PsbI, oxygen-evolving center [Energy production and conversion]; Photosystem II reaction center protein I, PsbI, oxygen-evolving center is part of the Pathway/BioSystem: Photosystem II


Pssm-ID: 444433  Cd Length: 38  Bit Score: 40.43  E-value: 3.81e-07
                         10        20        30
                 ....*....|....*....|....*....|....*...
gi 2127873151  1 MFTLKILVYTTVIFFISLFFFGFLSNDPSRNPNRKDLE 38
Cdd:COG5723    1 MLTLKIVVYIVVLFFVGLFIFGFLSNDPARNPGRKDLE 38
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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